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ONTOLOGY REPORT - ANNOTATIONS

Term:phototransduction
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Accession:GO:0007602 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms:narrow_synonym: phototransduction, visible light, light adaptation;   phototrophin mediated phototransduction
 related_synonym: opsin
 xref: Wikipedia:Visual_phototransduction


show annotations for term's descendants           Sort by:
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arrb1 arrestin, beta 1 acts_upstream_of_or_within ISO MGI:2388373 (PMID:11853756) RGD PMID:11853756 NCBI chr 1:163,249,654...163,321,711 JBrowse link
G Asic2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3043849 (PMID:14762118)		 Ensembl
RGD		 PMID:14762118 GO_REF:0000107 NCBI chr10:65,870,592...66,940,577 JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO MGI:3056615 (PMID:16249514) RGD PMID:16249514 NCBI chr 1:201,428,671...201,442,950 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within ISO MGI:3527896 (PMID:15634774) RGD PMID:15634774 NCBI chr19:9,726,595...9,791,111 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:11095744), (PMID:11853756), (PMID:15073279), (PMID:16249514), (PMID:17881533), (PMID:18367617) RGD PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845|MGI:5051274 (PMID:17408617), (PMID:18171936), (PMID:29518352) RGD PMID:17408617 PMID:18171936 PMID:29518352 NCBI chr 2:195,726,371...195,735,866 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (PMID:18367617) RGD PMID:18367617 NCBI chr 4:32,006,267...32,009,252 JBrowse link
G Gpr52 G protein-coupled receptor 52 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:72,800,265...72,804,989 JBrowse link
G Gpr88 G-protein coupled receptor 88 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:204,191,443...204,199,576 JBrowse link
G Guca1a guanylate cyclase activator 1A acts_upstream_of_or_within ISO MGI:2664159 (PMID:11493703), (PMID:15173221) RGD PMID:11493703 PMID:15173221 NCBI chr 9:13,588,988...13,598,566 JBrowse link
G Guca1b guanylate cyclase activator 1B acts_upstream_of_or_within ISO MGI:2664160 (PMID:11493703), (PMID:15173221) RGD PMID:11493703 PMID:15173221 NCBI chr 9:13,599,619...13,607,455 JBrowse link
G Opn1mw opsin 1, medium wave sensitive involved_in IEA
IBA		 GO_REF:0000043
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:151,905,056...151,925,419 JBrowse link
G Opn1sw opsin 1, short wave sensitive involved_in IEA
IBA		 GO_REF:0000043
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 NCBI chr 4:57,977,317...57,980,457 JBrowse link
G Opn3 opsin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:87,589,333...87,619,847 JBrowse link
G Opn4 opsin 4 involved_in IDA
IBA
ISO
IEA		 GO_REF:0000033
(PMID:12808468)
GO_REF:0000043
(PMID:15674244)		 GO_Central
RGD
UniProt		 PMID:12808468 PMID:15674244 PMID:11834834 GO_REF:0000033 GO_REF:0000043, RGD:633348 NCBI chr16:9,920,408...9,929,580 JBrowse link
G Opn5 opsin 5 involved_in ISO
IBA		 (PMID:30936473)
GO_REF:0000033		 RGD
GO_Central		 PMID:30936473 GO_REF:0000033 NCBI chr 9:18,368,393...18,416,098 JBrowse link
G Plcb4 phospholipase C, beta 4 NAS RGD PMID:7688223 RGD:633574 NCBI chr 3:122,952,965...123,322,522 JBrowse link
G Rcvrn recoverin acts_upstream_of_or_within ISO MGI:3584102 (PMID:15173221) RGD PMID:15173221 NCBI chr10:52,388,706...52,396,454 JBrowse link
G Rgr retinal G protein coupled receptor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:12,801,594...12,816,402 JBrowse link
G Rho rhodopsin acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 MGI:2181812 (PMID:16723493)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:16723493 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693 JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:218,362,195...218,374,387 JBrowse link
G Slc24a4 solute carrier family 24 member 4 acts_upstream_of ISO (PMID:28650316) RGD PMID:28650316 NCBI chr 6:121,279,590...121,419,811 JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 IMP RGD PMID:11931744 RGD:1599009 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 TAS RGD PMID:9147475 RGD:729748 NCBI chr16:76,122,501...76,135,792 JBrowse link
G Pcp2 Purkinje cell protein 2 acts_upstream_of_or_within ISO MGI:3579782 (PMID:18768681) RGD PMID:18768681 NCBI chr12:1,681,659...1,683,899 JBrowse link
G Rho rhodopsin IDA RGD PMID:8814134 RGD:6893595 NCBI chr 4:148,975,597...148,988,693 JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn5 opsin 5 involved_in ISO (PMID:22043319) RGD PMID:22043319 NCBI chr 9:18,368,393...18,416,098 JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784 (PMID:15365173) RGD PMID:15365173 NCBI chr10:56,655,693...56,664,922 JBrowse link
G Chrm1 cholinergic receptor, muscarinic 1 involved_in ISO (PMID:12196552) RGD PMID:12196552 NCBI chr 1:214,996,180...215,012,136 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 involved_in ISO
IBA		 (PMID:17584859)
GO_REF:0000033		 RGD
GO_Central		 PMID:17584859 GO_REF:0000033 NCBI chr 8:108,350,935...108,355,671 JBrowse link
G Gnat3 G protein subunit alpha transducin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:17,162,500...17,212,283 JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO MGI:2657247 (PMID:16723493) RGD PMID:16723493 NCBI chr 1:235,909,583...235,965,435 JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 acts_upstream_of
involved_in		 ISO
IEA		 MGI:2445721 (PMID:12484775)
GO_REF:0000107		 RGD
Ensembl		 PMID:12484775 GO_REF:0000107 NCBI chr 1:196,552,723...196,557,805 JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of ISO MGI:2445721 (PMID:12484775) RGD PMID:12484775 NCBI chr 1:235,893,917...235,901,315 JBrowse link
G Ttr transthyretin acts_upstream_of
involved_in		 ISO
IEA		 MGI:2445721 (PMID:12484775)
GO_REF:0000107		 RGD
Ensembl		 PMID:12484775 GO_REF:0000107 NCBI chr18:12,216,684...12,225,972 JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin IDA RGD PMID:2525480 RGD:6893558 NCBI chr 4:148,975,597...148,988,693 JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aipl1 aryl hydrocarbon receptor-interacting protein-like 1 acts_upstream_of_or_within ISO MGI:3054784|MGI:3054793 (PMID:15365173), (PMID:15365178) RGD PMID:15365173 PMID:15365178 NCBI chr10:56,655,693...56,664,922 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:15946941)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15946941 GO_REF:0000024 GO_REF:0000107 NCBI chr16:76,122,501...76,135,792 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      signal transduction 7251
        phototransduction 31
          G protein-coupled opsin signaling pathway + 5
          UV-A, blue light phototransduction 0
          phototransduction, UV 1
          phototransduction, visible light + 11
          red, far-red light phototransduction 1
Path 2
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11014
      response to abiotic stimulus 1597
        response to radiation 529
          response to light stimulus 375
            detection of light stimulus 54
              phototransduction 31
                G protein-coupled opsin signaling pathway + 5
                UV-A, blue light phototransduction 0
                phototransduction, UV 1
                phototransduction, visible light + 11
                red, far-red light phototransduction 1
paths to the root