D10Rat230 Marker Search Result - Rat Genome Database

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Marker: D10Rat230

Symbol: D10Rat230
Previously known as: oxsts8746; R0305-A05; 
RGD ID: 41860
Expected Size: 208 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21098,334,951 - 98,335,153 (+)MAPPERmRatBN7.2
Rnor_6.010101,814,047 - 101,814,248NCBIRnor6.0
Rnor_5.010101,487,925 - 101,488,126UniSTSRnor5.0
RGSC_v3.410102,920,914 - 102,921,116RGDRGSC3.4
RGSC_v3.410102,920,915 - 102,921,116UniSTSRGSC3.4
RGSC_v3.110102,935,284 - 102,935,486RGD
Celera1096,949,941 - 96,950,142UniSTS
SHRSP x BN Map1084.82UniSTS
SHRSP x BN Map1084.82RGD
Cytogenetic Map10q32.1UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Slc39a11  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CCAGCTAAGGCCAATGAGAC
Reverse Primer TTGTATGTGCATGTGTGCATG
 
Template 
ATCTAGAGGATCCCCACATCCTGATAATCCTGGTTCTGAGGAGGCAGAGACGGGGATCCCTTGA
GGCTAGCCCACCAGCCAGCTAAGGCCAATGAGACACCCTGCCTCAAAAACAAAATGGTGGACCA
TGGCTGGGGAACAACAGCCTGAGGTTATCTTCCGGTCTCCACAGGTCACAGGCACACCCATGCC
ATACATAAACATGAACATACATGTCACAAAGCCATGTCACACACACACACACACACACACACAC
ACACACAGTCATGCACACATGCACATACAACTCTGTGTTNAGATGGTCCCAGCCACAACGCTAC
TCTGNTCCCCACCCCATCCAGTGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTT
TCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGT
AAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTT
TCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGG
TTTGGTATTGGGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGANGGGCAACAGCTGATTGCCC
TTCACCGCCTGGCCCTGAGAGAGTTGCAGCAAGCGGTCCAGTGGTTTGNCCAGCAGGCGAAAAT
CTGTTTGATGGTGGTTCGAAATCGGCAAATCCTTATAAATCAAAGAATAGCCGAGATAGGGTTG
AGTGTGTTCAGTTTGNNAAGAGTCCCTATTAAGAAGTGGCTNACGTCAAGGGNNAANTNNTNGG
GTGCANTAGTGNCNTCCCNAT
Strain, Expected Size(s)

ACI/N 202 AVN/Orl 202 BBDP/Rhw 202
BBDR/Rhw 202 BC/CpbU 200 BDIX/Han 200
BDVII/Cub 202 BN-Lx/Cub 202 BN/SsNHsd 202
BP/Cub 200 BUF/Pit 200 COP/OlaHsd 202
DA/PitN 202 DON/Melb 202 F344/Pit 202
FHH/Eur 202 GH/Omr 200 GK/KyoSwe 200
IS/Kyo 200 LE/Mol 202 LEW/Pit 202
LH/Mav 202 LN/Mav 202 LOU/CHan 202
M520/N 202 MHS/Gib 200 MNR/N 200
MNRA/N 200 MNS/Gib 202 MR/Pit 200
NEDH/K 202 NP9 202 ODU/N 202
OKA/Wsl 200 OM/Ztm 202 P5C 202
PVG/Pit 202 SD/Rij 202 SHR/OlaHsd 200
SHRSP/Riv 200 SR/Jr 202 SS/Jr 202
WAG/RijKyo 202 WF/Pit 202 WIST/Nhg 202
WKY/OlaHsd 202 WN/N 202 WTC/Kyo 202


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1311981Slc39a11solute carrier family 39, member 11109827595898697042Rat
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 67 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat

1 to 10 of 67 rows


Database
Acc Id
Source(s)
NCBI Gene 287796 UniSTS