D12Rat3 Marker Search Result - Rat Genome Database

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Marker: D12Rat3

Symbol: D12Rat3
Previously known as: oxsts6088; R002-D02; R0002-D02; 
RGD ID: 34801
Expected Size: 152 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81216,925,670 - 16,925,822 (+)Marker Load Pipeline
mRatBN7.21211,812,159 - 11,812,311 (+)MAPPERmRatBN7.2
Rnor_6.01213,871,692 - 13,871,843NCBIRnor6.0
Rnor_5.01215,899,745 - 15,899,896UniSTSRnor5.0
RGSC_v3.41212,198,716 - 12,198,864RGDRGSC3.4
RGSC_v3.41212,198,713 - 12,198,864UniSTSRGSC3.4
RGSC_v3.11212,228,644 - 12,228,792RGD
Celera1213,598,434 - 13,598,585UniSTS
SHRSP x BN Map1215.9899UniSTS
SHRSP x BN Map1215.9899RGD
Cytogenetic Map12p11UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Tnrc18  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. UniSTS Pipeline RGD automated pipelines


 
Forward Primer ACCTCAACATCCTCCACCAG
Reverse Primer TCCTTGCCTGGTAGATTTCC
 
Strain, Expected Size(s)

ACI/N 150 AVN/Orl 156 BBDP/Rhw 156
BBDR/Rhw 156 BC/CpbU 156 BDIX/Han 160
BDVII/Cub 150 BN-Lx/Cub 154 BN/SsNHsd 154
BP/Cub 154 BUF/Pit 150 COP/OlaHsd 150
DA/PitN 150 DON/Melb 160 F344/Pit 160
FHH/Eur 150 GH/Omr 150 GK/KyoSwe 150
IS/Kyo 150 LE/Mol 156 LEW/Pit 156
LH/Mav 150 LN/Mav 160 LOU/CHan 150
M520/N 150 MHS/Gib 156 MNR/N 150
MNRA/N 150 MNS/Gib 164 MR/Pit 150
NEDH/K 160 NP9 156 ODU/N 150
OKA/Wsl 150 OM/Ztm 150 P5C 156
PVG/Pit 150 SD/Rij 156 SHR/OlaHsd 150
SHRSP/Riv 150 SR/Jr 160 SS/Jr 160
WAG/RijKyo 150 WF/Pit 150 WIST/Nhg 156
WKY/OlaHsd 150 WN/N 150 WTC/Kyo 150


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1307540Tnrc18trinucleotide repeat containing 18121175539411851717Rat
GenBank Nucleotide CH474012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat

1 to 10 of 38 rows


Database
Acc Id
Source(s)
NCBI Gene 304302 UniSTS