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glycogen metabolic pathway - Ontology Report - Rat Genome Database

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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:glycogen metabolic pathway
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Accession:PW:0000533 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of glycogen, a highly branched polysaccharide that constitutes the major form of glucose storage in the cell.
Synonyms:related_synonym: Glycogen metabolism;   glycogen metabolic process

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glycogen metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gck glucokinase IDA RGD PMID:14627435 PMID:15138155 RGD:1598592, RGD:1582633 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Gckr glucokinase regulator IDA RGD PMID:14627435 RGD:1598592 NCBI chr 6:30,765,071...30,795,627
Ensembl chr 6:25,045,100...25,075,654 		JBrowse link
G Gys2 glycogen synthase 2 IDA RGD PMID:15138155 RGD:1582633 NCBI chr 4:177,096,063...177,137,236
Ensembl chr 4:175,365,054...175,406,228 		JBrowse link
G Pygl glycogen phosphorylase L IDA RGD PMID:15138155 RGD:1582633 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
glycogen biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbe1 1,4-alpha-glucan branching enzyme 1 IDA RGD PMID:6449198 RGD:1642743 NCBI chr11:22,181,194...22,446,640
Ensembl chr11:8,734,820...9,000,210 		JBrowse link
G Gck glucokinase IDA RGD PMID:15138155 RGD:1582633 NCBI chr14:84,999,019...85,041,098
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:17530463 RGD:2306093 NCBI chr 1:89,943,669...89,953,514
Ensembl chr 1:80,815,850...80,825,802 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17530463 RGD:2306093 NCBI chr11:76,004,502...76,154,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Gyg1 glycogenin 1 IDA RGD PMID:8224611 PMID:10710493 RGD:2303736, RGD:2304070 NCBI chr 2:104,540,927...104,583,038
Ensembl chr 2:102,598,496...102,653,797 		JBrowse link
G Gys1 glycogen synthase 1 ISO
IDA		 RGD PMID:12297270 PMID:6449198 RGD:2304106, RGD:1642743 NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292 		JBrowse link
G Gys2 glycogen synthase 2 IDA
ISO		 RGD PMID:15138155 PMID:6449198 PMID:12297270 RGD:1582633, RGD:1642743, RGD:2304106 NCBI chr 4:177,096,063...177,137,236
Ensembl chr 4:175,365,054...175,406,228 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:119,710,734...119,770,159
Ensembl chr 5:114,595,293...114,654,728 		JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:34,383,072...34,400,553 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:43,905,648...43,946,236
Ensembl chr 4:42,939,599...42,980,638 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA		 RGD PMID:14715909 PMID:11716774 PMID:7720853 RGD:2304325, RGD:2306167, RGD:2304267 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
glycogen degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase IDA
IMP		 RGD PMID:15180797 PMID:11766064 RGD:1642741, RGD:2304191 NCBI chr 2:207,389,949...207,445,959
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G Calm1 calmodulin 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 6:12,845,170...12,857,830
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:119,710,734...119,770,159
Ensembl chr 5:114,595,293...114,654,728 		JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr  X:71,639,701...71,778,465
Ensembl chr  X:67,601,302...67,738,455 		JBrowse link
G Phka2 phosphorylase kinase regulatory subunit alpha 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr  X:37,979,629...38,102,656
Ensembl chr  X:34,171,323...34,293,466 		JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta ISO RGD PMID:10487978 RGD:2305981 NCBI chr19:37,179,937...37,383,979
Ensembl chr19:21,025,733...21,210,633 		JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr12:32,474,926...32,490,657
Ensembl chr12:26,838,968...26,852,850 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:182,184,650...182,197,124 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:34,383,072...34,400,553 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:43,905,648...43,946,236
Ensembl chr 4:42,939,599...42,980,638 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA		 RGD PMID:14715909 PMID:7720853 PMID:11716774 RGD:2304325, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
G Pygb glycogen phosphorylase B ISO RGD PMID:11340058 PMID:1544539 RGD:1642822, RGD:2304109 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:139,611,749...139,663,553 		JBrowse link
G Pygl glycogen phosphorylase L IDA
ISO		 RGD PMID:15138155 PMID:16125296 PMID:11340058 PMID:1544539 RGD:1582633, RGD:1601233, RGD:1642822, RGD:2304109 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:88,697,593...88,740,310 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated ISO
IDA		 RGD PMID:11340058 PMID:1544539 PMID:11692172 RGD:1642822, RGD:2304109, RGD:1599897 NCBI chr 1:213,119,805...213,134,622
Ensembl chr 1:203,690,533...203,705,368 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6091
    classic metabolic pathway 1852
      carbohydrate metabolic pathway 526
        glycogen metabolic pathway 31
          altered glycogen metabolic pathway + 0
          glycogen biosynthetic pathway + 18
          glycogen degradation pathway + 23
paths to the root