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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:glycogen biosynthetic pathway
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Accession:PW:0000532 term browser browse the term
Definition:Those metabolic reactions leading to the biosynthesis of glycogen, a highly branched polysaccharide. Glycogen is the storage form of glucose in the cell; it represents an energy reserve that can be mobilized when and where there is a need for glucose.
Synonyms:related_synonym: glycogenesis

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glycogen biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbe1 1,4-alpha-glucan branching enzyme 1 IDA RGD PMID:6449198 RGD:1642743 NCBI chr11:8,734,806...9,000,226
Ensembl chr11:8,734,820...9,000,210
JBrowse link
G Gck glucokinase IDA RGD PMID:15138155 RGD:1582633 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995
JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:17530463 RGD:2306093 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17530463 RGD:2306093 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Gyg1 glycogenin 1 IDA RGD PMID:8224611 PMID:10710493 RGD:2303736, RGD:2304070 NCBI chr 2:102,611,888...102,653,916
Ensembl chr 2:102,598,496...102,653,797
JBrowse link
G Gys1 glycogen synthase 1 ISO
IDA
RGD PMID:12297270 PMID:6449198 RGD:2304106, RGD:1642743 NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292
JBrowse link
G Gys2 glycogen synthase 2 IDA
ISO
RGD PMID:15138155 PMID:6449198 PMID:12297270 RGD:1582633, RGD:1642743, RGD:2304106 NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228
JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:114,595,298...114,654,728
Ensembl chr 5:114,595,293...114,654,728
JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,166,314...44,199,823
Ensembl chr14:44,164,425...44,199,967
JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:87,517,931...87,536,034
Ensembl chr 8:87,517,701...87,536,022
JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA
RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA
RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553
JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:42,937,353...42,980,195
Ensembl chr 4:42,939,599...42,980,638
JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA
RGD PMID:14715909 PMID:11716774 PMID:7720853 RGD:2304325, RGD:2306167, RGD:2304267 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406
JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961
JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455
JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6100
    classic metabolic pathway 1856
      carbohydrate metabolic pathway 525
        glycogen metabolic pathway 32
          glycogen biosynthetic pathway 18
            altered glycogen biosynthetic pathway 0
Path 2
Term Annotations click to browse term
  pathway 6100
    regulatory pathway 3876
      homeostasis pathway 1774
        glucose homeostasis pathway 344
          glucose utilization pathway 121
            glucose storage pathway 18
              glycogen biosynthetic pathway 18
                altered glycogen biosynthetic pathway 0
paths to the root