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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:glycogen degradation pathway
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Accession:PW:0000534 term browser browse the term
Definition:Those metabolic reactions involved in the breakdown of glycogen to glucose-6-phosphate. Glucose-6-phosphate can then be dephosphorylated to glucose or it can be utilized via glycolysis for energy production; an alternative pathway of G6P utilization is the oxidative phase of the pentose phosphate shunt. A small percentage of glucose-6-phosphate can be converted to hexosamines.
Synonyms:related_synonym: Glycogen breakdown (glycogenolysis);   glycogen catabolic process;   glycogenolysis
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glycogen degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agl amylo-alpha-1,6-glucosidase and 4-alpha-glucanotransferase IDA
IMP 		RGD PMID:15180797 PMID:11766064 RGD:1642741, RGD:2304191 NCBI chr 2:207,389,949...207,445,959
Ensembl chr 2:207,389,949...207,445,724 		JBrowse link
G Calm1 calmodulin 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 6:125,217,191...125,227,855
Ensembl chr 6:125,217,246...125,225,381 		JBrowse link
G Calm2 calmodulin 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 6:12,845,170...12,857,830
Ensembl chr15:64,519,554...64,520,657
Ensembl chr 6:64,519,554...64,520,657 		JBrowse link
G Calm3 calmodulin 3 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 1:86,718,761...86,725,869
Ensembl chr 1:86,717,321...86,725,960 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:119,710,734...119,770,159
Ensembl chr 5:119,710,737...119,770,159 		JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,519,906...44,553,420
Ensembl chr14:44,519,906...44,553,770 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:96,398,331...96,416,045
Ensembl chr 8:96,398,269...96,416,021 		JBrowse link
G Phka1 phosphorylase kinase regulatory subunit alpha 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr  X:71,639,701...71,778,465
Ensembl chr  X:71,641,246...71,778,320 		JBrowse link
G Phka2 phosphorylase kinase regulatory subunit alpha 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr  X:37,979,629...38,102,656
Ensembl chr  X:37,979,629...38,102,144 		JBrowse link
G Phkb phosphorylase kinase regulatory subunit beta ISO RGD PMID:10487978 RGD:2305981 NCBI chr19:37,179,937...37,383,979
Ensembl chr19:37,186,042...37,383,877 		JBrowse link
G Phkg1 phosphorylase kinase catalytic subunit gamma 1 ISO RGD PMID:10487978 RGD:2305981 NCBI chr12:32,474,926...32,490,657
Ensembl chr12:32,474,921...32,490,653 		JBrowse link
G Phkg2 phosphorylase kinase catalytic subunit gamma 2 ISO RGD PMID:10487978 RGD:2305981 NCBI chr 1:191,614,738...191,627,615
Ensembl chr 1:191,614,865...191,627,616 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:210,914,576...210,918,193
Ensembl chr 1:210,914,567...210,918,193 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA 		RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:29,681,099...29,712,835
Ensembl chr 6:29,681,100...29,712,924 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:40,043,822...40,061,301
Ensembl chr12:40,043,822...40,061,341 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:43,905,648...43,946,236
Ensembl chr 4:43,905,648...43,946,236 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA 		RGD PMID:14715909 PMID:7720853 PMID:11716774 RGD:2304325, RGD:2304267, RGD:2306167 NCBI chr16:63,533,318...63,545,683
Ensembl chr16:63,532,842...63,549,997 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:243,873,524...243,878,527
Ensembl chr 1:243,871,704...243,878,835 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:185,880,087...185,883,158
Ensembl chr 3:185,876,709...185,883,703 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:32,318,435...32,319,595 JBrowse link
G Pygb glycogen phosphorylase B ISO RGD PMID:11340058 PMID:1544539 RGD:1642822, RGD:2304109 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:160,072,115...160,123,961 		JBrowse link
G Pygl glycogen phosphorylase L IDA
ISO 		RGD PMID:15138155 PMID:16125296 PMID:11340058 PMID:1544539 RGD:1582633, RGD:1601233, RGD:1642822, RGD:2304109 NCBI chr 6:94,433,558...94,476,219
Ensembl chr 6:94,426,346...94,476,269 		JBrowse link
G Pygm glycogen phosphorylase, muscle associated ISO
IDA 		RGD PMID:11340058 PMID:1544539 PMID:11692172 RGD:1642822, RGD:2304109, RGD:1599897 NCBI chr 1:213,119,805...213,134,622
Ensembl chr 1:213,119,791...213,134,612 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6090
    classic metabolic pathway 1853
      carbohydrate metabolic pathway 526
        glycogen metabolic pathway 31
          glycogen degradation pathway 23
            altered glycogen degradation pathway 0
Path 2
Term Annotations click to browse term
  pathway 6090
    regulatory pathway 3864
      homeostasis pathway 1772
        organic chemical homeostasis pathway 767
          glucose homeostasis pathway 344
            glucose biosynthesis pathway 98
              glycogen degradation pathway 23
                altered glycogen degradation pathway 0
paths to the root