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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nek4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chrNW_004955430:2,695,674...2,733,204
Ensembl chrNW_004955430:2,696,493...2,733,392
JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift88 intraflagellar transport 88 located_in ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector located_in ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein located_in ISO (MGI:6331463|PMID:30535028) UniProt PMID:30535028 MGI:6331463 NCBI chrNW_004955484:3,567,896...3,948,807
Ensembl chrNW_004955484:3,567,396...3,949,261
JBrowse link
G Spag16 sperm associated antigen 16 located_in ISO (MGI:3766863|PMID:17699735)
(MGI:2389554|PMID:12391165)
MGI PMID:12391165 PMID:17699735 MGI:2389554 MGI:3766863 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spag17 sperm associated antigen 17 located_in ISO (MGI:3807761|PMID:15827353)
(MGI:5576118|PMID:23418344)
MGI PMID:15827353 PMID:23418344 MGI:3807761 MGI:5576118 NCBI chrNW_004955435:21,063,005...21,281,997
Ensembl chrNW_004955435:21,078,646...21,282,043
JBrowse link
G Spef1 sperm flagellar 1 located_in ISO (MGI:6331463|PMID:30535028) UniProt PMID:30535028 MGI:6331463 NCBI chrNW_004955415:14,620,593...14,626,049
Ensembl chrNW_004955415:14,620,593...14,626,049
JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein located_in ISO (MGI:3793384|PMID:18250199) MGI PMID:18250199 MGI:3793384 NCBI chrNW_004955484:3,567,896...3,948,807
Ensembl chrNW_004955484:3,567,396...3,949,261
JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah2 dynein axonemal heavy chain 2 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941
JBrowse link
G Dnah5 dynein axonemal heavy chain 5 part_of ISO (MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:2178772 NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502
JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 part_of ISO (PMID:11153919) MGI PMID:11153919 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053
JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:8,870,877...8,928,070
Ensembl chrNW_004955423:8,870,602...8,928,743
JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
G Dnai7 dynein axonemal intermediate chain 7 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955413:20,227,807...20,287,211
Ensembl chrNW_004955413:20,227,903...20,287,131
JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 located_in ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chrNW_004955445:9,069,803...9,153,746
Ensembl chrNW_004955445:9,070,234...9,153,213
JBrowse link
G Cep162 centrosomal protein 162 located_in ISO (PMID:23644468) UniProt PMID:23644468 NCBI chrNW_004955411:11,661,767...11,727,210
Ensembl chrNW_004955411:11,658,499...11,727,284
JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569
JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 located_in ISO (PMID:25673876) UniProt PMID:25673876 NCBI chrNW_004955434:21,414,937...21,454,901
Ensembl chrNW_004955434:21,414,033...21,494,399
JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 located_in ISO (MGI:5646278|PMID:24740601) MGI PMID:24740601 MGI:5646278 NCBI chrNW_004955513:2,069,187...2,185,469
Ensembl chrNW_004955513:2,065,004...2,185,404
JBrowse link
G Akap14 A-kinase anchoring protein 14 located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955534:120,603...137,227 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452
JBrowse link
G Arl13b ADP ribosylation factor like GTPase 13B part_of ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955407:3,402,214...3,477,839
Ensembl chrNW_004955407:3,402,908...3,460,105
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISO (MGI:5925653|PMID:26455799) UniProt PMID:26455799 MGI:5925653 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687
JBrowse link
G Atg14 autophagy related 14 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506
JBrowse link
G Atg16l1 autophagy related 16 like 1 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581
JBrowse link
G Atg5 autophagy related 5 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827
JBrowse link
G Atg7 autophagy related 7 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
JBrowse link
G Bbs5 Bardet-Biedl syndrome 5 located_in ISO (MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:5588761 NCBI chrNW_004955449:5,043,034...5,061,806
Ensembl chrNW_004955449:5,041,748...5,061,806
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in ISO (MGI:5492028|PMID:22302990) MGI PMID:22302990 MGI:5492028 NCBI chrNW_004955428:18,682,072...18,724,560
Ensembl chrNW_004955428:18,681,856...18,724,560
JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 located_in ISO (MGI:6436727|PMID:32482850) UniProt PMID:32482850 MGI:6436727 NCBI chrNW_004955563:1,639,369...1,648,826
Ensembl chrNW_004955563:1,639,600...1,648,818
JBrowse link
G Ccdc39 coiled-coil domain containing 39 located_in ISO (PMID:21131972), (PMID:21131974), (PMID:26387594) MGI PMID:21131972 PMID:21131974 PMID:26387594 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835
JBrowse link
G Ccdc40 coiled-coil domain containing 40 located_in ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026
JBrowse link
G Ccsap centriole, cilia and spindle associated protein located_in ISO (PMID:22493317) UniProt PMID:22493317 NCBI chrNW_004955492:8,685,667...8,700,306 JBrowse link
G Cenpf centromere protein F located_in ISO (MGI:5694347|PMID:25564561) MGI PMID:25564561 MGI:5694347 NCBI chrNW_004955406:3,225,788...3,273,037
Ensembl chrNW_004955406:3,223,993...3,273,714
JBrowse link
G Cfap43 cilia and flagella associated protein 43 located_in ISO (MGI:6402702|PMID:31884020) MGI PMID:31884020 MGI:6402702 NCBI chrNW_004955485:6,418,063...6,515,730
Ensembl chrNW_004955485:6,451,004...6,515,532
JBrowse link
G Cfap45 cilia and flagella associated protein 45 located_in ISO (PMID:33139725) GO_Central PMID:33139725 NCBI chrNW_004955468:11,672,332...11,711,395
Ensembl chrNW_004955468:11,672,462...11,699,245
JBrowse link
G Cfap52 cilia and flagella associated protein 52 located_in ISO (PMID:33139725) GO_Central PMID:33139725 NCBI chrNW_004955467:7,461,258...7,524,178
Ensembl chrNW_004955467:7,459,322...7,524,522
JBrowse link
G Cfap53 cilia and flagella associated protein 53 located_in ISO (MGI:6503922|PMID:33347437) MGI PMID:33347437 MGI:6503922 NCBI chrNW_004955402:35,295,007...35,318,800
Ensembl chrNW_004955402:35,295,007...35,318,799
JBrowse link
G Cfap70 cilia and flagella associated protein 70 located_in ISO (MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:6383288 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Ctsh cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chrNW_004955533:39,237...54,881
Ensembl chrNW_004955533:39,284...54,837
JBrowse link
G Cys1 cystin 1 located_in ISO (MGI:4461844|PMID:19850956)
(MGI:2158985|PMID:11854326), (MGI:4461844|PMID:19850956)
MGI PMID:11854326 PMID:19850956 MGI:2158985 MGI:4461844 NCBI chrNW_004955487:5,455,820...5,461,362 JBrowse link
G Dcdc2 doublecortin domain containing 2 located_in ISO (PMID:25557784), (PMID:27319779) UniProt PMID:25557784 PMID:27319779 NCBI chrNW_004955483:2,608,063...2,783,872
Ensembl chrNW_004955483:2,607,925...2,778,799
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 located_in ISO (PMID:18385425) UniProt PMID:18385425 NCBI chrNW_004955564:132,497...149,399 JBrowse link
G Dnah1 dynein axonemal heavy chain 1 located_in ISO (PMID:24360805) UniProt PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470
Ensembl chrNW_004955430:2,327,584...2,391,423
JBrowse link
G Dnah11 dynein axonemal heavy chain 11 located_in ISO (PMID:31178125)
(MGI:6120222|PMID:26909801), (MGI:6503922|PMID:33347437)
(PMID:33139725)
UniProt
MGI
GO_Central
PMID:26909801 PMID:31178125 PMID:33139725 PMID:33347437 MGI:6120222 MGI:6503922 NCBI chrNW_004955410:24,045,333...24,352,626
Ensembl chrNW_004955410:24,044,886...24,352,626
JBrowse link
G Dnah17 dynein axonemal heavy chain 17 located_in ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022
Ensembl chrNW_004955506:4,044,553...4,160,793
JBrowse link
G Dnah2 dynein axonemal heavy chain 2 located_in ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941
JBrowse link
G Dnah5 dynein axonemal heavy chain 5 located_in ISO (PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
(MGI:5551687|PMID:23849778), (MGI:5607335|PMID:25192045), (MGI:6284218|PMID:29916806), (MGI:6503922|PMID:33347437)
SYSCILIA_CCNET
MGI
PMID:15750039 PMID:16492982 PMID:18950741 PMID:23849778 PMID:24203976 More... MGI:5551687 MGI:5607335 MGI:6284218 MGI:6503922 NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502
JBrowse link
G Dnah8 dynein axonemal heavy chain 8 located_in ISO (PMID:31178125)
(PMID:32619401)
UniProt PMID:31178125 PMID:32619401 NCBI chrNW_004955437:4,441,776...4,722,261
Ensembl chrNW_004955437:4,441,655...4,718,247
JBrowse link
G Dnah9 dynein axonemal heavy chain 9 located_in ISO (PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125) SYSCILIA_CCNET PMID:11104725 PMID:11839535 PMID:15750039 PMID:18950741 PMID:23849778 More... NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755
JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 located_in ISO (MGI:6284218|PMID:29916806)
(PMID:18950741), (PMID:23849778)
(PMID:11153919)
MGI
SYSCILIA_CCNET
PMID:11153919 PMID:18950741 PMID:23849778 PMID:29916806 MGI:6284218 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053
JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 located_in ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 located_in ISO (MGI:3806784|PMID:18247331) MGI PMID:18247331 MGI:3806784 NCBI chrNW_004955414:17,599,549...17,613,724
Ensembl chrNW_004955414:17,597,478...17,613,724
JBrowse link
G Dnali1 dynein axonemal light intermediate chain 1 located_in ISO (MGI:3628860|PMID:16496424), (MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
MGI
UniProt
PMID:16496424 PMID:23849778 PMID:26909801 PMID:29916806 PMID:31178125 MGI:3628860 MGI:6284218 NCBI chrNW_004955452:15,367,443...15,375,001
Ensembl chrNW_004955452:15,367,443...15,377,105
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 located_in ISO (MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:5009180 NCBI chrNW_004955412:6,267,726...6,518,888
Ensembl chrNW_004955412:6,268,214...6,518,468
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 located_in ISO (MGI:5551675|PMID:24183451) UniProt PMID:24183451 MGI:5551675 NCBI chrNW_004955570:1,076,498...1,086,629
Ensembl chrNW_004955570:1,076,568...1,086,613
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 located_in ISO (MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:5009180 NCBI chrNW_004955441:10,928,577...10,961,194
Ensembl chrNW_004955441:10,928,343...10,961,194
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chrNW_004955420:12,515,195...12,528,863 JBrowse link
G Dynlt4 dynein light chain Tctex-type 4 located_in ISO (PMID:23789093)
(MGI:5510909|PMID:23789093)
UniProt
MGI
PMID:23789093 MGI:5510909 NCBI chrNW_004955464:13,417,735...13,419,646
Ensembl chrNW_004955464:13,417,859...13,419,635
JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like located_in ISO (MGI:6149643|PMID:29487109) MGI PMID:29487109 MGI:6149643 NCBI chrNW_004955501:895,245...965,626
Ensembl chrNW_004955501:897,692...965,626
JBrowse link
G Efhc1 EF-hand domain containing 1 located_in ISO (MGI:3529636|PMID:15670853) UniProt PMID:15670853 MGI:3529636 NCBI chrNW_004955411:5,624,510...5,676,165
Ensembl chrNW_004955411:5,624,053...5,677,534
JBrowse link
G Gabarap GABA type A receptor-associated protein located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955467:9,667,938...9,670,067
Ensembl chrNW_004955467:9,667,941...9,670,067
JBrowse link
G Gas8 growth arrest specific 8 located_in ISO (PMID:16643277), (PMID:26387594) UniProt PMID:16643277 PMID:26387594 NCBI chrNW_004955541:3,477,067...3,494,991
Ensembl chrNW_004955541:3,476,451...3,496,572
JBrowse link
G Gli1 GLI family zinc finger 1 part_of ISO (MGI:3692156|PMID:16254602) CACAO PMID:16254602 MGI:3692156 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196
JBrowse link
G Gli2 GLI family zinc finger 2 part_of ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Gli3 GLI family zinc finger 3 part_of ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chrNW_004955410:5,145,768...5,211,594
Ensembl chrNW_004955410:5,163,784...5,211,594
JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (MGI:4460838|PMID:20368623), (MGI:5553228|PMID:23418020) UniProt PMID:20368623 PMID:23418020 MGI:4460838 MGI:5553228 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484
JBrowse link
G Ift57 intraflagellar transport 57 part_of ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720
JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (MGI:2158985|PMID:11854326), (MGI:2664063|PMID:11251073), (MGI:3773480|PMID:18066062), (MGI:4460838|PMID:20368623), (MGI:5544506|PMID:24302887) MGI PMID:11251073 PMID:11854326 PMID:18066062 PMID:20368623 PMID:24302887 MGI:2158985 MGI:2664063 MGI:3773480 MGI:4460838 MGI:5544506 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122
JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E located_in ISO (PMID:19668215)
(MGI:4359555|PMID:19668215)
UniProt PMID:19668215 MGI:4359555 NCBI chrNW_004955513:4,304,483...4,313,087
Ensembl chrNW_004955513:4,304,483...4,313,087
JBrowse link
G Kif17 kinesin family member 17 located_in ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Kif3a kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998
JBrowse link
G Lca5 lebercilin LCA5 located_in ISO (MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:5588761 NCBI chrNW_004955502:7,325,650...7,373,641
Ensembl chrNW_004955502:7,325,103...7,376,368
JBrowse link
G Mak male germ cell associated kinase located_in ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203
JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Map4 microtubule associated protein 4 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955420:24,437,492...24,537,410 JBrowse link
G Mapk15 mitogen-activated protein kinase 15 NOT|located_in ISO (PMID:29021280) UniProt PMID:29021280 NCBI chrNW_004955454:2,413,393...2,420,703
Ensembl chrNW_004955454:2,413,822...2,419,276
JBrowse link
G Mapt microtubule associated protein tau located_in ISO (MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:3821640 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
JBrowse link
G Mns1 meiosis specific nuclear structural 1 located_in ISO (MGI:5318625|PMID:22396656)
(PMID:30148830)
MGI
UniProt
PMID:22396656 PMID:30148830 MGI:5318625 NCBI chrNW_004955450:17,819,812...17,852,157
Ensembl chrNW_004955450:17,819,929...17,851,762
JBrowse link
G Nme8 NME/NM23 family member 8 part_of ISO (MGI:2680785|PMID:12909633) ARUK-UCL PMID:12909633 MGI:2680785 NCBI chrNW_004955460:5,672,768...5,718,707
Ensembl chrNW_004955460:5,680,678...5,718,628
JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 located_in ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chrNW_004955559:2,123,941...2,153,192
Ensembl chrNW_004955559:2,124,525...2,151,610
JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 located_in ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778 PMID:24203976 NCBI chrNW_004955462:1,709,493...1,885,094
Ensembl chrNW_004955462:1,709,493...1,884,900
JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 located_in ISO (PMID:25192045) UniProt PMID:25192045 NCBI chrNW_004955495:2,318,840...2,330,966
Ensembl chrNW_004955495:2,318,471...2,330,508
JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 located_in ISO (PMID:27486780)
(MGI:6503922|PMID:33347437)
GO_Central
MGI
PMID:27486780 PMID:33347437 MGI:6503922 NCBI chrNW_004955451:16,098,495...16,112,985
Ensembl chrNW_004955451:16,098,586...16,112,630
JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955501:7,604,934...7,681,947
Ensembl chrNW_004955501:7,604,501...7,681,947
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955478:4,241,283...4,262,119
Ensembl chrNW_004955478:4,241,283...4,263,087
JBrowse link
G Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with ISO (PMID:12475942) UniProtKB PMID:12475942 NCBI chrNW_004955532:827,112...896,487
Ensembl chrNW_004955532:827,418...852,845
JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (MGI:2676521|PMID:14507858), (MGI:4460838|PMID:20368623), (MGI:4461813|PMID:20592197), (MGI:5588761|PMID:24833722), (MGI:6194004|PMID:29899041) MGI PMID:14507858 PMID:20368623 PMID:20592197 PMID:24833722 PMID:29899041 MGI:2676521 MGI:4460838 MGI:4461813 MGI:5588761 MGI:6194004 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:1933524|PMID:11104772) MGI PMID:11104772 MGI:1933524 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498
JBrowse link
G Rpgrip1l RPGRIP1 like located_in ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569
JBrowse link
G Rsph4a radial spoke head component 4A located_in ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704
JBrowse link
G Rsph6a radial spoke head 6 homolog A located_in ISO (MGI:6279049|PMID:30239614) UniProt PMID:30239614 MGI:6279049 NCBI chrNW_004955574:247,728...264,238
Ensembl chrNW_004955574:247,695...264,238
JBrowse link
G Rsph9 radial spoke head component 9 located_in ISO (PMID:26909801)
(MGI:6451324|PMID:30383886)
GO_Central
UniProt
PMID:26909801 PMID:30383886 MGI:6451324 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514
JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955542:401,081...444,304
Ensembl chrNW_004955542:401,081...443,962
JBrowse link
G Septin7 septin 7 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955460:7,287,452...7,374,747 JBrowse link
G Septin9 septin 9 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955506:4,943,108...5,033,088
Ensembl chrNW_004955506:4,942,056...5,090,441
JBrowse link
G Spag16 sperm associated antigen 16 located_in ISO (MGI:3052627|PMID:15328412), (MGI:3619868|PMID:16382026), (MGI:3844768|PMID:19305393) MGI PMID:15328412 PMID:16382026 PMID:19305393 MGI:3052627 MGI:3619868 MGI:3844768 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spag6 sperm associated antigen 6 located_in ISO (PMID:10493827) GO_Central PMID:10493827 NCBI chrNW_004955429:625,601...662,804 JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISO (PMID:25398945) UniProt PMID:25398945 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128
JBrowse link
G Tmem67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644
JBrowse link
G Togaram1 TOG array regulator of axonemal microtubules 1 located_in ISO (PMID:32453716) UniProt PMID:32453716 NCBI chrNW_004955409:16,885,564...16,967,865
Ensembl chrNW_004955409:16,886,423...16,967,641
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 located_in ISO (MGI:5298450|PMID:21945076) MGI PMID:21945076 MGI:5298450 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215
JBrowse link
G Ttll10 tubulin tyrosine ligase like 10 located_in ISO (MGI:3850271|PMID:19524510) UniProt PMID:19524510 MGI:3850271 NCBI chrNW_004955486:9,576,174...9,589,297 JBrowse link
G Ttll3 tubulin tyrosine ligase like 3 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chrNW_004955561:1,330,378...1,353,217 JBrowse link
G Ttll8 tubulin tyrosine ligase like 8 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chrNW_004955413:33,086,528...33,119,801
Ensembl chrNW_004955413:33,088,932...33,119,031
JBrowse link
G Tubb4a tubulin beta 4A class IVa located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955495:3,134,181...3,138,725
Ensembl chrNW_004955495:3,133,429...3,139,552
JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (MGI:3841503|PMID:19286674) MGI PMID:19286674 MGI:3841503 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400
JBrowse link
G Wdr11 WD repeat domain 11 located_in ISO (MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:6116377 NCBI chrNW_004955551:1,733,079...1,788,354
Ensembl chrNW_004955551:1,733,004...1,788,438
JBrowse link
G Wdr35 WD repeat domain 35 located_in ISO (MGI:4950635|PMID:21473986) UniProt PMID:21473986 MGI:4950635 NCBI chrNW_004955469:2,484,972...2,546,562
Ensembl chrNW_004955469:2,482,353...2,546,578
JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah9 dynein axonemal heavy chain 9 located_in ISO (PMID:26909801), (PMID:30471717)
(MGI:6503922|PMID:33347437)
GO_Central
MGI
PMID:26909801 PMID:30471717 PMID:33347437 MGI:6503922 NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755
JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah1 dynein axonemal heavy chain 1 part_of ISO (PMID:24360805) SYSCILIA_CCNET PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470
Ensembl chrNW_004955430:2,327,584...2,391,423
JBrowse link
G Dnah2 dynein axonemal heavy chain 2 part_of ISO (PMID:30811583) UniProt PMID:30811583 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941
JBrowse link
G Dnah7 dynein axonemal heavy chain 7 part_of ISO (PMID:11877439) SYSCILIA_CCNET PMID:11877439 NCBI chrNW_004955403:4,189,887...4,426,405
Ensembl chrNW_004955403:4,189,887...4,426,399
JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap70 cilia and flagella associated protein 70 part_of ISO (PMID:31621862) UniProt PMID:31621862 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 part_of ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022
Ensembl chrNW_004955506:4,044,553...4,160,793
JBrowse link
G Dnah5 dynein axonemal heavy chain 5 part_of ISO (PMID:16627867)
(MGI:6147712|PMID:27353389)
(PMID:11062149), (PMID:11788826), (PMID:22499950)
SYSCILIA_CCNET
MGI
PMID:11062149 PMID:11788826 PMID:16627867 PMID:22499950 PMID:27353389 MGI:6147712 NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502
JBrowse link
G Dnah9 dynein axonemal heavy chain 9 part_of ISO (MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:6147712 NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755
JBrowse link
G Dnai1 dynein axonemal intermediate chain 1 part_of ISO (PMID:11231901), (PMID:16858015) SYSCILIA_CCNET PMID:11231901 PMID:16858015 NCBI chrNW_004955472:1,599,265...1,668,214
Ensembl chrNW_004955472:1,599,493...1,668,024
JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 part_of ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053
JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 part_of ISO (MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:6147712 NCBI chrNW_004955449:3,204,839...3,256,059 JBrowse link
G Nme8 NME/NM23 family member 8 part_of ISO (PMID:17360648) SYSCILIA_CCNET PMID:17360648 NCBI chrNW_004955460:5,672,768...5,718,707
Ensembl chrNW_004955460:5,680,678...5,718,628
JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 part_of ISO (PMID:23261303) UniProt PMID:23261303 NCBI chrNW_004955559:2,123,941...2,153,192
Ensembl chrNW_004955559:2,124,525...2,151,610
JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odad4 outer dynein arm docking complex subunit 4 part_of ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004955451:16,098,495...16,112,985
Ensembl chrNW_004955451:16,098,586...16,112,630
JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein axonemal heavy chain 11 located_in ISO (PMID:26909801)
(MGI:6120222|PMID:26909801), (MGI:6503922|PMID:33347437)
GO_Central
MGI
PMID:26909801 PMID:33347437 MGI:6120222 MGI:6503922 NCBI chrNW_004955410:24,045,333...24,352,626
Ensembl chrNW_004955410:24,044,886...24,352,626
JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph4a radial spoke head component 4A part_of ISO (MGI:5882054|PMID:26506310) MGI PMID:26506310 MGI:5882054 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12254
    cellular anatomical entity 12102
      organelle 9553
        membrane-bounded organelle 8769
          cilium 602
            ciliary plasm 107
              axoneme + 106
Path 2
Term Annotations click to browse term
  cellular_component 12254
    cellular anatomical entity 12102
      intracellular anatomical structure 10375
        cytoplasm 8091
          cytoplasmic region 181
            plasma membrane bounded cell projection cytoplasm 148
              ciliary plasm 107
                axoneme + 106
paths to the root