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ONTOLOGY REPORT - ANNOTATIONS

Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm

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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nek4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chrNW_004955430:2,695,674...2,733,204
Ensembl chrNW_004955430:2,696,493...2,733,392 		JBrowse link
axonemal A tubule inner sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap107 cilia and flagella associated protein 107 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955486:538,170...551,522
Ensembl chrNW_004955486:538,143...551,488 		JBrowse link
G Cfap141 cilia and flagella associated protein 141 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955545:752,737...754,039
Ensembl chrNW_004955545:752,737...754,042 		JBrowse link
G Cfap161 cilia and flagella associated protein 161 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955416:11,833,610...11,844,452 JBrowse link
G Cfap53 cilia and flagella associated protein 53 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955402:35,295,007...35,318,800
Ensembl chrNW_004955402:35,295,007...35,318,799 		JBrowse link
G Cfap68 cilia and flagella associated protein 68 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955412:13,605,526...13,609,865
Ensembl chrNW_004955412:13,605,819...13,612,070 		JBrowse link
G Cfap95 cilia and flagella associated protein 95 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955434:3,193,250...3,267,992
Ensembl chrNW_004955434:3,190,776...3,267,922 		JBrowse link
G Cimip2a ciliary microtubule inner protein 2A is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955513:5,239,239...5,245,859
Ensembl chrNW_004955513:5,235,629...5,245,859 		JBrowse link
G Cimip2c ciliary microtubule inner protein 2C is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955469:8,588,820...8,603,333
Ensembl chrNW_004955469:8,588,900...8,604,337 		JBrowse link
G Dusp21 dual specificity phosphatase 21 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955516:3,369,548...3,370,403 JBrowse link
G Efcab6 EF-hand calcium binding domain 6 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955413:28,569,080...28,783,455
Ensembl chrNW_004955413:28,567,634...28,783,565 		JBrowse link
G Efhb EF-hand domain family member B is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955430:11,932,753...11,986,985
Ensembl chrNW_004955430:11,932,296...11,987,845 		JBrowse link
G Efhc1 EF-hand domain containing 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955411:5,624,510...5,676,165
Ensembl chrNW_004955411:5,624,053...5,677,534 		JBrowse link
G Efhc2 EF-hand domain containing 2 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955516:3,867,542...4,036,049
Ensembl chrNW_004955516:3,867,535...4,036,293 		JBrowse link
G Mns1 meiosis specific nuclear structural 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955450:17,819,812...17,852,157
Ensembl chrNW_004955450:17,819,929...17,851,762 		JBrowse link
G Nme7 NME/NM23 family member 7 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955462:7,879,754...8,073,207
Ensembl chrNW_004955462:7,880,157...8,073,186 		JBrowse link
G Pierce1 piercer of microtubule wall 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955513:4,047,764...4,055,692
Ensembl chrNW_004955513:4,052,413...4,055,691 		JBrowse link
G Pierce2 piercer of microtubule wall 2 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955409:523,414...530,630
Ensembl chrNW_004955409:523,414...526,391 		JBrowse link
G Ribc1 RIB43A domain with coiled-coils 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955475:468,435...486,441
Ensembl chrNW_004955475:473,349...478,399 		JBrowse link
G Ribc2 RIB43A domain with coiled-coils 2 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955413:29,765,119...29,781,206
Ensembl chrNW_004955413:29,764,684...29,783,711 		JBrowse link
G Saxo4 stabilizer of axonemal microtubules 4 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955511:6,105,063...6,116,809
Ensembl chrNW_004955511:6,111,729...6,117,366 		JBrowse link
G Spag8 sperm associated antigen 8 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955472:503,286...506,261
Ensembl chrNW_004955472:504,087...505,835 		JBrowse link
G Spmip5 sperm microtubule inner protein 5 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955431:21,454,858...21,463,068
Ensembl chrNW_004955431:21,455,073...21,462,992 		JBrowse link
G Spmip6 sperm microtubule inner protein 6 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955472:1,718,474...1,733,980
Ensembl chrNW_004955472:1,718,517...1,735,004 		JBrowse link
G Spmip8 sperm microtubule inner protein 8 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955433:15,551,435...15,558,054
Ensembl chrNW_004955433:15,551,428...15,558,152 		JBrowse link
G Spmip9 sperm microtubule inner protein 9 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955424:296,514...305,141
Ensembl chrNW_004955424:295,268...304,328 		JBrowse link
G Tekt1 tektin 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955467:12,278,515...12,301,736
Ensembl chrNW_004955467:12,276,702...12,301,630 		JBrowse link
G Tekt2 tektin 2 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955452:14,117,043...14,120,800
Ensembl chrNW_004955452:14,117,548...14,126,664 		JBrowse link
G Tekt3 tektin 3 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955467:2,347,996...2,381,346
Ensembl chrNW_004955467:2,347,907...2,381,431 		JBrowse link
G Tekt5 tektin 5 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955442:7,740,611...7,778,130
Ensembl chrNW_004955442:7,740,540...7,778,245 		JBrowse link
G Tektip1 tektin bundle interacting protein 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955495:5,504,867...5,507,412
Ensembl chrNW_004955495:5,505,349...5,507,412 		JBrowse link
axonemal B tubule inner sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap126 cilia and flagella associated protein 126 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955468:13,085,324...13,088,022 JBrowse link
G Cfap144 cilia and flagella associated protein 144 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955418:29,605,614...29,609,806 JBrowse link
G Cfap20 cilia and flagella associated protein 20 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955433:15,648,529...15,663,308
Ensembl chrNW_004955433:15,648,099...15,663,502 		JBrowse link
G Cfap210 cilia and flagella associated protein 210 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955449:4,886,108...4,912,371
Ensembl chrNW_004955449:4,886,220...4,911,377 		JBrowse link
G Cfap276 cilia and flagella associated protein 276 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955435:12,522,502...12,530,699
Ensembl chrNW_004955435:12,523,992...12,531,225 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955468:11,672,332...11,711,395
Ensembl chrNW_004955468:11,672,462...11,699,245 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955467:7,461,258...7,524,178
Ensembl chrNW_004955467:7,459,322...7,524,522 		JBrowse link
G Cfap77 cilia and flagella associated protein 77 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955513:1,834,654...1,951,827
Ensembl chrNW_004955513:1,834,388...1,953,638 		JBrowse link
G Cfap90 cilia and flagella associated protein 90 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955504:5,380,575...5,395,166
Ensembl chrNW_004955504:5,380,575...5,395,166 		JBrowse link
G Enkur enkurin, TRPC channel interacting protein is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955429:4,182,507...4,203,275
Ensembl chrNW_004955429:4,182,715...4,204,077 		JBrowse link
G Pacrg parkin coregulated is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955439:18,152,719...18,664,026
Ensembl chrNW_004955439:18,153,227...18,663,780 		JBrowse link
G Spmip10 sperm microtubule inner protein 10 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955521:4,444,948...4,448,702
Ensembl chrNW_004955521:4,444,968...4,448,791 		JBrowse link
G Tektl1 tektin like 1 is_active_in ISO (PMID:37295417) MGI PMID:37295417 NCBI chrNW_004955495:8,258,304...8,264,462
Ensembl chrNW_004955495:8,258,095...8,264,468 		JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift88 intraflagellar transport 88 located_in ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector located_in ISO (PMID:24302887) MGI PMID:24302887 NCBI chrNW_004955424:20,723,592...21,114,801 JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein located_in ISO (MGI:6331463|PMID:30535028) UniProt PMID:30535028 MGI:6331463 NCBI chrNW_004955484:3,567,896...3,948,807
Ensembl chrNW_004955484:3,567,396...3,949,261 		JBrowse link
G Spag16 sperm associated antigen 16 located_in ISO (PMID:12391165) MGI PMID:12391165 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spag17 sperm associated antigen 17 located_in ISO (PMID:23418344)
(PMID:15827353)		 MGI PMID:15827353 PMID:23418344 NCBI chrNW_004955435:21,063,005...21,281,997
Ensembl chrNW_004955435:21,078,646...21,282,043 		JBrowse link
G Spef1 sperm flagellar 1 located_in ISO (MGI:6331463|PMID:30535028) UniProt PMID:30535028 MGI:6331463 NCBI chrNW_004955415:14,620,593...14,626,049
Ensembl chrNW_004955415:14,620,593...14,626,049 		JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin HYDIN axonemal central pair apparatus protein located_in ISO (PMID:18250199) MGI PMID:18250199 NCBI chrNW_004955484:3,567,896...3,948,807
Ensembl chrNW_004955484:3,567,396...3,949,261 		JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah2 dynein axonemal heavy chain 2 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941 		JBrowse link
G Dnah5 dynein axonemal heavy chain 5 part_of ISO (PMID:11912187) MGI PMID:11912187 NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502 		JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 part_of ISO (PMID:11153919) MGI PMID:11153919 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053 		JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:8,870,877...8,928,070
Ensembl chrNW_004955423:8,870,602...8,928,743 		JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
G Dnai7 dynein axonemal intermediate chain 7 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955413:20,227,807...20,287,211
Ensembl chrNW_004955413:20,227,903...20,287,131 		JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 located_in ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chrNW_004955445:9,069,803...9,153,746
Ensembl chrNW_004955445:9,070,234...9,153,213 		JBrowse link
G Cep162 centrosomal protein 162 located_in ISO (PMID:23644468) UniProt PMID:23644468 NCBI chrNW_004955411:11,661,767...11,727,210
Ensembl chrNW_004955411:11,658,499...11,727,284 		JBrowse link
G Cfap107 cilia and flagella associated protein 107 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955486:538,170...551,522
Ensembl chrNW_004955486:538,143...551,488 		JBrowse link
G Cfap126 cilia and flagella associated protein 126 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955468:13,085,324...13,088,022 JBrowse link
G Cfap141 cilia and flagella associated protein 141 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955545:752,737...754,039
Ensembl chrNW_004955545:752,737...754,042 		JBrowse link
G Cfap144 cilia and flagella associated protein 144 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955418:29,605,614...29,609,806 JBrowse link
G Cfap161 cilia and flagella associated protein 161 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955416:11,833,610...11,844,452 JBrowse link
G Cfap20 cilia and flagella associated protein 20 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955433:15,648,529...15,663,308
Ensembl chrNW_004955433:15,648,099...15,663,502 		JBrowse link
G Cfap210 cilia and flagella associated protein 210 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955449:4,886,108...4,912,371
Ensembl chrNW_004955449:4,886,220...4,911,377 		JBrowse link
G Cfap276 cilia and flagella associated protein 276 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955435:12,522,502...12,530,699
Ensembl chrNW_004955435:12,523,992...12,531,225 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955468:11,672,332...11,711,395
Ensembl chrNW_004955468:11,672,462...11,699,245 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955467:7,461,258...7,524,178
Ensembl chrNW_004955467:7,459,322...7,524,522 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955402:35,295,007...35,318,800
Ensembl chrNW_004955402:35,295,007...35,318,799 		JBrowse link
G Cfap77 cilia and flagella associated protein 77 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955513:1,834,654...1,951,827
Ensembl chrNW_004955513:1,834,388...1,953,638 		JBrowse link
G Cfap95 cilia and flagella associated protein 95 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955434:3,193,250...3,267,992
Ensembl chrNW_004955434:3,190,776...3,267,922 		JBrowse link
G Cimip2b ciliary microtubule inner protein 2B located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955472:695,955...698,086
Ensembl chrNW_004955472:696,157...697,922 		JBrowse link
G Cimip2c ciliary microtubule inner protein 2C located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955469:8,588,820...8,603,333
Ensembl chrNW_004955469:8,588,900...8,604,337 		JBrowse link
G Efhb EF-hand domain family member B located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955430:11,932,753...11,986,985
Ensembl chrNW_004955430:11,932,296...11,987,845 		JBrowse link
G Efhc1 EF-hand domain containing 1 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955411:5,624,510...5,676,165
Ensembl chrNW_004955411:5,624,053...5,677,534 		JBrowse link
G Efhc2 EF-hand domain containing 2 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955516:3,867,542...4,036,049
Ensembl chrNW_004955516:3,867,535...4,036,293 		JBrowse link
G Enkur enkurin, TRPC channel interacting protein located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955429:4,182,507...4,203,275
Ensembl chrNW_004955429:4,182,715...4,204,077 		JBrowse link
G Mns1 meiosis specific nuclear structural 1 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955450:17,819,812...17,852,157
Ensembl chrNW_004955450:17,819,929...17,851,762 		JBrowse link
G Nme7 NME/NM23 family member 7 located_in ISO (PMID:36191189), (PMID:37258679)
(MGI:7495398|PMID:37295417)		 UniProt PMID:36191189 PMID:37258679 PMID:37295417 MGI:7495398 NCBI chrNW_004955462:7,879,754...8,073,207
Ensembl chrNW_004955462:7,880,157...8,073,186 		JBrowse link
G Pacrg parkin coregulated located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955439:18,152,719...18,664,026
Ensembl chrNW_004955439:18,153,227...18,663,780 		JBrowse link
G Pierce1 piercer of microtubule wall 1 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955513:4,047,764...4,055,692
Ensembl chrNW_004955513:4,052,413...4,055,691 		JBrowse link
G Pierce2 piercer of microtubule wall 2 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955409:523,414...530,630
Ensembl chrNW_004955409:523,414...526,391 		JBrowse link
G Ribc2 RIB43A domain with coiled-coils 2 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955413:29,765,119...29,781,206
Ensembl chrNW_004955413:29,764,684...29,783,711 		JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569 		JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 located_in ISO (PMID:25673876) UniProt PMID:25673876 NCBI chrNW_004955434:21,414,937...21,454,901
Ensembl chrNW_004955434:21,414,033...21,494,399 		JBrowse link
G Spaca9 sperm acrosome associated 9 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955513:2,184,878...2,196,367
Ensembl chrNW_004955513:2,185,754...2,196,323 		JBrowse link
G Spag8 sperm associated antigen 8 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955472:503,286...506,261
Ensembl chrNW_004955472:504,087...505,835 		JBrowse link
G Tekt1 tektin 1 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955467:12,278,515...12,301,736
Ensembl chrNW_004955467:12,276,702...12,301,630 		JBrowse link
G Tekt2 tektin 2 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955452:14,117,043...14,120,800
Ensembl chrNW_004955452:14,117,548...14,126,664 		JBrowse link
G Tekt3 tektin 3 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955467:2,347,996...2,381,346
Ensembl chrNW_004955467:2,347,907...2,381,431 		JBrowse link
G Tubb4b tubulin beta 4B class IVb located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955513:5,237,050...5,239,370
Ensembl chrNW_004955513:5,235,629...5,239,370 		JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 located_in ISO (PMID:33139725)
(PMID:24740601)		 GO_Central
MGI		 PMID:24740601 PMID:33139725 NCBI chrNW_004955513:2,069,187...2,185,469
Ensembl chrNW_004955513:2,065,004...2,185,404 		JBrowse link
G Akap14 A-kinase anchoring protein 14 located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955534:120,603...137,227 JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452 		JBrowse link
G Arl13b ADP ribosylation factor like GTPase 13B located_in ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955407:3,402,214...3,477,839
Ensembl chrNW_004955407:3,402,908...3,460,105 		JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISO (MGI:5925653|PMID:26455799) UniProt PMID:26455799 MGI:5925653 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687 		JBrowse link
G Atg14 autophagy related 14 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atg16l1 autophagy related 16 like 1 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg5 autophagy related 5 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Atg7 autophagy related 7 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Bbof1 basal body orientation factor 1 located_in ISO (MGI:7565919|PMID:37198331) UniProt PMID:37198331 MGI:7565919 NCBI chrNW_004955523:1,363,246...1,405,022 JBrowse link
G Bbs5 Bardet-Biedl syndrome 5 located_in ISO (PMID:24833722) MGI PMID:24833722 NCBI chrNW_004955449:5,043,034...5,061,806
Ensembl chrNW_004955449:5,041,748...5,061,806 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in ISO (PMID:22302990) MGI PMID:22302990 NCBI chrNW_004955428:18,682,072...18,724,560
Ensembl chrNW_004955428:18,681,856...18,724,560 		JBrowse link
G Brwd1 bromodomain and WD repeat domain containing 1 located_in ISO (PMID:33389130) UniProt PMID:33389130 NCBI chrNW_004955407:38,003,386...38,107,958 JBrowse link
G Camsap3 calmodulin regulated spectrin associated protein family member 3 located_in ISO (MGI:6436727|PMID:32482850) UniProt PMID:32482850 MGI:6436727 NCBI chrNW_004955563:1,639,369...1,648,826
Ensembl chrNW_004955563:1,639,600...1,648,818 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit located_in ISO (PMID:21131972), (PMID:21131974), (PMID:26387594) MGI PMID:21131972 PMID:21131974 PMID:26387594 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit located_in ISO (PMID:23255504) SYSCILIA_CCNET PMID:23255504 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026 		JBrowse link
G Ccsap centriole, cilia and spindle associated protein located_in ISO (PMID:22493317) UniProt PMID:22493317 NCBI chrNW_004955492:8,685,667...8,700,306 JBrowse link
G Cenpf centromere protein F located_in ISO (PMID:25564561) MGI PMID:25564561 NCBI chrNW_004955406:3,225,788...3,273,037
Ensembl chrNW_004955406:3,223,993...3,273,714 		JBrowse link
G Cfap119 cilia and flagella associated protein 119 NOT|located_in ISO PMID:27032685 UniProt PMID:27032685 RGD:11529800 NCBI chrNW_004955493:7,622,564...7,627,094
Ensembl chrNW_004955493:7,622,564...7,627,093 		JBrowse link
G Cfap43 cilia and flagella associated protein 43 located_in ISO (PMID:31884020) MGI PMID:31884020 NCBI chrNW_004955485:6,418,063...6,515,730
Ensembl chrNW_004955485:6,451,004...6,515,532 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 located_in ISO (PMID:33139725) GO_Central PMID:33139725 NCBI chrNW_004955468:11,672,332...11,711,395
Ensembl chrNW_004955468:11,672,462...11,699,245 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 located_in ISO (PMID:33139725) GO_Central PMID:33139725 NCBI chrNW_004955467:7,461,258...7,524,178
Ensembl chrNW_004955467:7,459,322...7,524,522 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 located_in ISO (PMID:25504577)
(PMID:33347437)		 UniProt
MGI		 PMID:25504577 PMID:33347437 NCBI chrNW_004955402:35,295,007...35,318,800
Ensembl chrNW_004955402:35,295,007...35,318,799 		JBrowse link
G Cfap61 cilia and flagella associated protein 61 located_in ISO (PMID:35387802) MGI PMID:35387802 NCBI chrNW_004955415:28,171,364...28,389,356
Ensembl chrNW_004955415:28,170,751...28,389,427 		JBrowse link
G Cfap68 cilia and flagella associated protein 68 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955412:13,605,526...13,609,865
Ensembl chrNW_004955412:13,605,819...13,612,070 		JBrowse link
G Cfap70 cilia and flagella associated protein 70 located_in ISO (MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:6383288 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Cfap90 cilia and flagella associated protein 90 located_in ISO (PMID:36191189) UniProt PMID:36191189 NCBI chrNW_004955504:5,380,575...5,395,166
Ensembl chrNW_004955504:5,380,575...5,395,166 		JBrowse link
G Ctsh cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chrNW_004955533:39,237...54,881
Ensembl chrNW_004955533:39,284...54,837 		JBrowse link
G Cys1 cystin 1 located_in ISO (PMID:11854326), (PMID:19850956) MGI PMID:11854326 PMID:19850956 NCBI chrNW_004955487:5,455,820...5,461,362 JBrowse link
G Dcdc2 doublecortin domain containing 2 located_in ISO (PMID:25557784), (PMID:27319779) UniProt PMID:25557784 PMID:27319779 NCBI chrNW_004955483:2,608,063...2,783,872
Ensembl chrNW_004955483:2,607,925...2,778,799 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 located_in ISO (PMID:18385425) UniProt PMID:18385425 NCBI chrNW_004955564:132,497...149,399
Ensembl chrNW_004955564:132,760...149,399 		JBrowse link
G Dnah1 dynein axonemal heavy chain 1 located_in ISO (PMID:24360805) UniProt PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470
Ensembl chrNW_004955430:2,327,584...2,391,423 		JBrowse link
G Dnah11 dynein axonemal heavy chain 11 located_in ISO (PMID:31178125)
(PMID:26909801), (PMID:33347437)
(PMID:33139725)		 UniProt
MGI
GO_Central		 PMID:26909801 PMID:31178125 PMID:33139725 PMID:33347437 NCBI chrNW_004955410:24,045,333...24,352,626
Ensembl chrNW_004955410:24,044,886...24,352,626 		JBrowse link
G Dnah17 dynein axonemal heavy chain 17 located_in ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022
Ensembl chrNW_004955506:4,044,553...4,160,793 		JBrowse link
G Dnah2 dynein axonemal heavy chain 2 located_in ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941 		JBrowse link
G Dnah5 dynein axonemal heavy chain 5 located_in ISO (PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
(PMID:23849778), (PMID:25192045), (PMID:29916806), (PMID:33347437)		 GO_Central
MGI		 PMID:15750039 PMID:16492982 PMID:18950741 PMID:23849778 PMID:24203976 More... NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502 		JBrowse link
G Dnah8 dynein axonemal heavy chain 8 located_in ISO (PMID:31178125)
(PMID:32619401)		 UniProt PMID:31178125 PMID:32619401 NCBI chrNW_004955437:4,441,776...4,722,261
Ensembl chrNW_004955437:4,441,655...4,718,247 		JBrowse link
G Dnah9 dynein axonemal heavy chain 9 located_in ISO (PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125) MGI PMID:11104725 PMID:11839535 PMID:15750039 PMID:18950741 PMID:23849778 More... NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755 		JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 located_in ISO (PMID:11153919)
(PMID:29916806)
(PMID:18950741), (PMID:23849778)		 MGI
SYSCILIA_CCNET		 PMID:11153919 PMID:18950741 PMID:23849778 PMID:29916806 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053 		JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 located_in ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chrNW_004955423:24,027,924...24,089,914 JBrowse link
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 located_in ISO (PMID:18247331) MGI PMID:18247331 NCBI chrNW_004955414:17,599,549...17,613,724
Ensembl chrNW_004955414:17,597,478...17,613,724 		JBrowse link
G Dnali1 dynein axonemal light intermediate chain 1 located_in ISO (PMID:23849778), (PMID:26909801), (PMID:31178125)
(PMID:16496424), (PMID:29916806)		 MGI PMID:16496424 PMID:23849778 PMID:26909801 PMID:29916806 PMID:31178125 NCBI chrNW_004955452:15,367,443...15,375,001
Ensembl chrNW_004955452:15,367,443...15,377,105 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 located_in ISO (MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:5009180 NCBI chrNW_004955412:6,267,726...6,518,888
Ensembl chrNW_004955412:6,268,214...6,518,468 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 located_in ISO (MGI:5551675|PMID:24183451) UniProt PMID:24183451 MGI:5551675 NCBI chrNW_004955570:1,076,498...1,086,629
Ensembl chrNW_004955570:1,076,568...1,086,613 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 located_in ISO (MGI:5009180|PMID:12802074) BHF-UCL PMID:12802074 MGI:5009180 NCBI chrNW_004955441:10,928,577...10,961,194
Ensembl chrNW_004955441:10,928,343...10,961,194 		JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B located_in ISO (PMID:25830415) GO_Central PMID:25830415 NCBI chrNW_004955420:12,515,195...12,528,863
Ensembl chrNW_004955420:12,515,195...12,528,861 		JBrowse link
G Dynlt4 dynein light chain Tctex-type 4 located_in ISO (PMID:23789093) UniProt
MGI		 PMID:23789093 NCBI chrNW_004955464:13,417,735...13,419,646
Ensembl chrNW_004955464:13,417,859...13,419,635 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like located_in ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004955501:895,245...965,626
Ensembl chrNW_004955501:897,692...965,626 		JBrowse link
G Efhc1 EF-hand domain containing 1 located_in ISO (MGI:3529636|PMID:15670853) UniProt PMID:15670853 MGI:3529636 NCBI chrNW_004955411:5,624,510...5,676,165
Ensembl chrNW_004955411:5,624,053...5,677,534 		JBrowse link
G Gabarap GABA type A receptor-associated protein located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955467:9,667,938...9,670,067
Ensembl chrNW_004955467:9,667,941...9,670,067 		JBrowse link
G Gas8 growth arrest specific 8 located_in ISO (PMID:16643277), (PMID:26387594) UniProt PMID:16643277 PMID:26387594 NCBI chrNW_004955541:3,477,067...3,494,991
Ensembl chrNW_004955541:3,476,451...3,496,572 		JBrowse link
G Gli1 GLI family zinc finger 1 located_in ISO (MGI:3692156|PMID:16254602) CACAO PMID:16254602 MGI:3692156 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196 		JBrowse link
G Gli2 GLI family zinc finger 2 located_in ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gli3 GLI family zinc finger 3 located_in ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Gnat3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chrNW_004955410:5,145,768...5,211,594
Ensembl chrNW_004955410:5,163,784...5,211,594 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (MGI:5553228|PMID:23418020), (PMID:20368623) MGI PMID:20368623 PMID:23418020 MGI:5553228 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (MGI:4888042|PMID:21209331) CACAO PMID:21209331 MGI:4888042 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:11251073), (PMID:11854326), (PMID:18066062), (PMID:20368623), (PMID:24302887) MGI PMID:11251073 PMID:11854326 PMID:18066062 PMID:20368623 PMID:24302887 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E located_in ISO (PMID:19668215)
(MGI:4359555|PMID:19668215)		 UniProt PMID:19668215 MGI:4359555 NCBI chrNW_004955513:4,304,483...4,313,087
Ensembl chrNW_004955513:4,304,483...4,313,087 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Kif3a kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998 		JBrowse link
G Lca5 lebercilin LCA5 located_in ISO (PMID:24833722) MGI PMID:24833722 NCBI chrNW_004955502:7,325,650...7,373,641
Ensembl chrNW_004955502:7,325,103...7,376,368 		JBrowse link
G Mak male germ cell associated kinase located_in ISO (PMID:21148103) MGI PMID:21148103 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Map4 microtubule associated protein 4 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955420:24,437,492...24,537,410 JBrowse link
G Mapk15 mitogen-activated protein kinase 15 NOT|located_in ISO (PMID:29021280) UniProt PMID:29021280 NCBI chrNW_004955454:2,413,393...2,420,703
Ensembl chrNW_004955454:2,413,822...2,419,276 		JBrowse link
G Mapt microtubule associated protein tau located_in ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442 		JBrowse link
G Mns1 meiosis specific nuclear structural 1 located_in ISO (PMID:30148830)
(MGI:7565919|PMID:37198331), (PMID:22396656)		 UniProt PMID:22396656 PMID:30148830 PMID:37198331 MGI:7565919 NCBI chrNW_004955450:17,819,812...17,852,157
Ensembl chrNW_004955450:17,819,929...17,851,762 		JBrowse link
G Nme8 NME/NM23 family member 8 located_in ISO (MGI:2680785|PMID:12909633) ARUK-UCL PMID:12909633 MGI:2680785 NCBI chrNW_004955460:5,672,768...5,718,707
Ensembl chrNW_004955460:5,680,678...5,718,628 		JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 located_in ISO (PMID:25192045) SYSCILIA_CCNET PMID:25192045 NCBI chrNW_004955559:2,123,941...2,153,192
Ensembl chrNW_004955559:2,124,525...2,151,610 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 located_in ISO (PMID:23849778), (PMID:24203976) SYSCILIA_CCNET PMID:23849778 PMID:24203976 NCBI chrNW_004955462:1,709,493...1,885,094
Ensembl chrNW_004955462:1,709,493...1,884,900 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 located_in ISO (PMID:25192045) UniProt PMID:25192045 NCBI chrNW_004955495:2,318,840...2,330,966
Ensembl chrNW_004955495:2,318,471...2,330,508 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 located_in ISO (PMID:27486780)
(PMID:33347437)		 GO_Central
MGI		 PMID:27486780 PMID:33347437 NCBI chrNW_004955451:16,098,495...16,112,985
Ensembl chrNW_004955451:16,098,586...16,112,630 		JBrowse link
G Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chrNW_004955501:7,604,934...7,681,947
Ensembl chrNW_004955501:7,604,501...7,681,947 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955415:32,794,172...32,807,944
Ensembl chrNW_004955415:32,793,718...32,812,930 		JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955478:4,241,283...4,262,119
Ensembl chrNW_004955478:4,241,283...4,263,087 		JBrowse link
G Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955532:827,112...896,487
Ensembl chrNW_004955532:827,418...852,845 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (MGI:2676521|PMID:14507858), (PMID:20368623), (PMID:20592197), (PMID:24833722), (PMID:29899041) UniProt PMID:14507858 PMID:20368623 PMID:20592197 PMID:24833722 PMID:29899041 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:11104772) MGI PMID:11104772 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Rpgrip1l RPGRIP1 like located_in ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:34871179) MGI PMID:34871179 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Rsph4a radial spoke head component 4A located_in ISO (PMID:23255504)
(PMID:34871179)		 SYSCILIA_CCNET
MGI		 PMID:23255504 PMID:34871179 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704 		JBrowse link
G Rsph6a radial spoke head 6 homolog A located_in ISO (MGI:6279049|PMID:30239614) UniProt PMID:30239614 MGI:6279049 NCBI chrNW_004955574:247,728...264,238
Ensembl chrNW_004955574:247,695...264,238 		JBrowse link
G Rsph9 radial spoke head component 9 located_in ISO (PMID:26909801)
(MGI:6451324|PMID:30383886), (PMID:34871179)		 GO_Central
UniProt		 PMID:26909801 PMID:30383886 PMID:34871179 MGI:6451324 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514 		JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955542:401,081...444,304
Ensembl chrNW_004955542:401,081...443,962 		JBrowse link
G Septin7 septin 7 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955460:7,287,452...7,374,747 JBrowse link
G Septin9 septin 9 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955506:4,943,108...5,033,088
Ensembl chrNW_004955506:4,942,056...5,090,441 		JBrowse link
G Spag16 sperm associated antigen 16 located_in ISO (MGI:3844768|PMID:19305393) UniProt PMID:19305393 MGI:3844768 NCBI chrNW_004955457:1,543,946...2,492,686 JBrowse link
G Spag6 sperm associated antigen 6 located_in ISO (PMID:10493827) GO_Central PMID:10493827 NCBI chrNW_004955429:625,601...662,804 JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISO (PMID:25398945) UniProt PMID:25398945 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128 		JBrowse link
G Ssna1 SS nuclear autoantigen 1 located_in ISO (PMID:12640030) UniProt PMID:12640030 NCBI chrNW_004955513:5,194,308...5,195,721
Ensembl chrNW_004955513:5,194,308...5,195,721 		JBrowse link
G Tmem67 transmembrane protein 67 located_in ISO RGD PMID:23516626 RGD:11535084 NCBI chrNW_004955417:10,097,488...10,137,959
Ensembl chrNW_004955417:10,097,472...10,138,644 		JBrowse link
G Togaram1 TOG array regulator of axonemal microtubules 1 located_in ISO (PMID:32453716) UniProt PMID:32453716 NCBI chrNW_004955409:16,885,564...16,967,865
Ensembl chrNW_004955409:16,886,423...16,967,641 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 located_in ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004955542:2,264,472...2,301,083
Ensembl chrNW_004955542:2,265,901...2,301,215 		JBrowse link
G Ttll10 tubulin tyrosine ligase like 10 located_in ISO (MGI:3850271|PMID:19524510) UniProt PMID:19524510 MGI:3850271 NCBI chrNW_004955486:9,576,174...9,589,297 JBrowse link
G Ttll3 tubulin tyrosine ligase like 3 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chrNW_004955561:1,330,378...1,353,217 JBrowse link
G Ttll8 tubulin tyrosine ligase like 8 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chrNW_004955413:33,086,528...33,119,801
Ensembl chrNW_004955413:33,088,932...33,119,031 		JBrowse link
G Tubb4a tubulin beta 4A class IVa located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chrNW_004955495:3,134,181...3,138,725
Ensembl chrNW_004955495:3,133,429...3,139,552 		JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
G Wdr11 WD repeat domain 11 located_in ISO (MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:6116377 NCBI chrNW_004955551:1,733,079...1,788,354
Ensembl chrNW_004955551:1,733,004...1,788,438 		JBrowse link
G Wdr35 WD repeat domain 35 located_in ISO (MGI:4950635|PMID:21473986) UniProt PMID:21473986 MGI:4950635 NCBI chrNW_004955469:2,484,972...2,546,562
Ensembl chrNW_004955469:2,482,353...2,546,578 		JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah9 dynein axonemal heavy chain 9 located_in ISO (PMID:26909801), (PMID:30471717)
(PMID:33347437)		 GO_Central
MGI		 PMID:26909801 PMID:30471717 PMID:33347437 NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755 		JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah1 dynein axonemal heavy chain 1 part_of ISO (PMID:24360805) SYSCILIA_CCNET PMID:24360805 NCBI chrNW_004955430:2,323,928...2,391,470
Ensembl chrNW_004955430:2,327,584...2,391,423 		JBrowse link
G Dnah2 dynein axonemal heavy chain 2 part_of ISO (PMID:30811583) UniProt PMID:30811583 NCBI chrNW_004955467:9,107,089...9,210,941
Ensembl chrNW_004955467:9,107,295...9,210,941 		JBrowse link
G Dnah7 dynein axonemal heavy chain 7 part_of ISO (PMID:11877439) SYSCILIA_CCNET PMID:11877439 NCBI chrNW_004955403:4,189,887...4,426,405
Ensembl chrNW_004955403:4,189,887...4,426,399 		JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap70 cilia and flagella associated protein 70 part_of ISO (PMID:31621862) UniProt PMID:31621862 NCBI chrNW_004955437:18,424,568...18,480,327 JBrowse link
G Dnah17 dynein axonemal heavy chain 17 part_of ISO (PMID:31178125) UniProt PMID:31178125 NCBI chrNW_004955506:4,042,768...4,161,022
Ensembl chrNW_004955506:4,044,553...4,160,793 		JBrowse link
G Dnah5 dynein axonemal heavy chain 5 part_of ISO (PMID:16627867)
(PMID:27353389)
(PMID:11062149), (PMID:11788826), (PMID:22499950)		 SYSCILIA_CCNET
MGI		 PMID:11062149 PMID:11788826 PMID:16627867 PMID:22499950 PMID:27353389 NCBI chrNW_004955426:3,105,631...3,406,587
Ensembl chrNW_004955426:3,106,410...3,353,502 		JBrowse link
G Dnah9 dynein axonemal heavy chain 9 part_of ISO (PMID:27353389) MGI PMID:27353389 NCBI chrNW_004955467:5,357,500...5,677,144
Ensembl chrNW_004955467:5,357,500...5,677,755 		JBrowse link
G Dnai1 dynein axonemal intermediate chain 1 part_of ISO (PMID:11231901), (PMID:16858015) SYSCILIA_CCNET PMID:11231901 PMID:16858015 NCBI chrNW_004955472:1,599,265...1,668,214
Ensembl chrNW_004955472:1,599,493...1,668,024 		JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 part_of ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chrNW_004955553:1,188,279...1,212,053
Ensembl chrNW_004955553:1,188,279...1,212,053 		JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 part_of ISO (PMID:27353389) MGI PMID:27353389 NCBI chrNW_004955449:3,204,839...3,256,059 JBrowse link
G Nme8 NME/NM23 family member 8 part_of ISO (PMID:17360648) SYSCILIA_CCNET PMID:17360648 NCBI chrNW_004955460:5,672,768...5,718,707
Ensembl chrNW_004955460:5,680,678...5,718,628 		JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 part_of ISO (PMID:23261303) UniProt PMID:23261303 NCBI chrNW_004955559:2,123,941...2,153,192
Ensembl chrNW_004955559:2,124,525...2,151,610 		JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odad4 outer dynein arm docking complex subunit 4 part_of ISO (PMID:27486780) GO_Central PMID:27486780 NCBI chrNW_004955451:16,098,495...16,112,985
Ensembl chrNW_004955451:16,098,586...16,112,630 		JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein axonemal heavy chain 11 located_in ISO (PMID:26909801)
(PMID:26909801), (PMID:33347437)		 GO_Central
MGI		 PMID:26909801 PMID:33347437 NCBI chrNW_004955410:24,045,333...24,352,626
Ensembl chrNW_004955410:24,044,886...24,352,626 		JBrowse link
radial spoke term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955414:17,599,549...17,613,724
Ensembl chrNW_004955414:17,597,478...17,613,724 		JBrowse link
G Dydc1 DPY30 domain containing 1 part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955510:319,535...337,268
Ensembl chrNW_004955510:318,654...330,610 		JBrowse link
G Iqub IQ motif and ubiquitin domain containing part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955479:4,988,718...5,059,800
Ensembl chrNW_004955479:4,988,438...5,059,998 		JBrowse link
G Nme5 NME/NM23 family member 5 part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955418:2,282,721...2,301,997
Ensembl chrNW_004955418:2,282,574...2,302,106 		JBrowse link
G Ropn1l rhophilin associated tail protein 1 like part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955426:285,053...296,913
Ensembl chrNW_004955426:285,278...296,828 		JBrowse link
G Rsph1 radial spoke head component 1 part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Rsph14 radial spoke head 14 homolog part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955455:7,491,693...7,574,257
Ensembl chrNW_004955455:7,488,504...7,572,047 		JBrowse link
G Rsph6a radial spoke head 6 homolog A part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955574:247,728...264,238
Ensembl chrNW_004955574:247,695...264,238 		JBrowse link
G Rsph9 radial spoke head component 9 part_of ISO (MGI:7407981|PMID:36417862) UniProt PMID:36417862 MGI:7407981 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514 		JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph1 radial spoke head component 1 part_of ISO (MGI:7447185|PMID:34871179) UniProt PMID:34871179 MGI:7447185 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Rsph4a radial spoke head component 4A part_of ISO (MGI:7447185|PMID:34871179)
(PMID:26506310)		 UniProt
MGI		 PMID:26506310 PMID:34871179 MGI:7447185 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704 		JBrowse link
G Rsph6a radial spoke head 6 homolog A part_of ISO (MGI:7447185|PMID:34871179)
(PMID:30185526)		 UniProt
MGI		 PMID:30185526 PMID:34871179 MGI:7447185 NCBI chrNW_004955574:247,728...264,238
Ensembl chrNW_004955574:247,695...264,238 		JBrowse link
G Rsph9 radial spoke head component 9 part_of ISO (MGI:7447185|PMID:34871179) UniProt PMID:34871179 MGI:7447185 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514 		JBrowse link
radial spoke head 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph1 radial spoke head component 1 part_of ISO (PMID:34871179) MGI PMID:34871179 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Rsph4a radial spoke head component 4A part_of ISO (PMID:32203505), (PMID:34871179) MGI PMID:32203505 PMID:34871179 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704 		JBrowse link
G Rsph9 radial spoke head component 9 part_of ISO (PMID:34871179) MGI PMID:34871179 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514 		JBrowse link
radial spoke head 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph4a radial spoke head component 4A part_of ISO (PMID:32203505) MGI PMID:32203505 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704 		JBrowse link
radial spoke head 3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph1 radial spoke head component 1 part_of ISO (PMID:34871179) MGI PMID:34871179 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Rsph4a radial spoke head component 4A part_of ISO (PMID:32203505), (PMID:34871179) MGI PMID:32203505 PMID:34871179 NCBI chrNW_004955436:30,638...43,581
Ensembl chrNW_004955436:27,902...43,704 		JBrowse link
G Rsph9 radial spoke head component 9 part_of ISO (PMID:34871179) MGI PMID:34871179 NCBI chrNW_004955437:9,437,281...9,448,514
Ensembl chrNW_004955437:9,437,281...9,448,514 		JBrowse link
radial spoke stalk term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap61 cilia and flagella associated protein 61 part_of ISO (PMID:34792097) MGI PMID:34792097 NCBI chrNW_004955415:28,171,364...28,389,356
Ensembl chrNW_004955415:28,170,751...28,389,427 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12560
    cellular anatomical entity 12403
      organelle 9813
        membrane-bounded organelle 8936
          cilium 676
            ciliary plasm 159
              axoneme + 158
Path 2
Term Annotations click to browse term
  cellular_component 12560
    cellular anatomical entity 12403
      intracellular anatomical structure 10528
        cytoplasm 8213
          cytoplasmic region 243
            plasma membrane bounded cell projection cytoplasm 208
              ciliary plasm 159
                axoneme + 158
paths to the root