Spmip5 (sperm microtubule inner protein 5) - Rat Genome Database

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Gene: Spmip5 (sperm microtubule inner protein 5) Chinchilla lanigera
Analyze
Symbol: Spmip5
Name: sperm microtubule inner protein 5 (Ensembl:chromosome unknown open reading frame, human C10orf82)
RGD ID: 8946061
Description: ASSOCIATED WITH genetic disease (ortholog); substance-related disorder (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C10orf82 homolog; chromosome unknown open reading frame, human C10orf82; CUNH10orf82; LOC102024150; sperm associated microtubule inner protein 5; uncharacterized protein C10orf82 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,455,073 - 21,462,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,454,858 - 21,463,068 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Spmip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,455,073 - 21,462,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,454,858 - 21,463,068 (-)NCBIChiLan1.0ChiLan1.0
SPMIP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,662,211 - 116,670,282 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,663,696 - 116,670,264 (-)EnsemblGRCh38hg38GRCh38
GRCh3710118,421,722 - 118,429,793 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,413,197 - 118,419,471 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410118,413,197 - 118,419,471NCBI
Celera10112,152,637 - 112,158,902 (-)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10112,051,390 - 112,057,655 (-)NCBIHuRef
CHM1_110118,706,330 - 118,712,599 (-)NCBICHM1_1
T2T-CHM13v2.010117,556,531 - 117,564,614 (-)NCBIT2T-CHM13v2.0
Spmip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,774,233 - 58,782,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,774,235 - 58,782,893 (-)EnsemblGRCm39 Ensembl
GRCm381958,785,801 - 58,794,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,785,803 - 58,794,461 (-)EnsemblGRCm38mm10GRCm38
MGSCv371958,860,293 - 58,868,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361958,839,053 - 58,847,664 (-)NCBIMGSCv36mm8
Celera1960,982,677 - 60,991,313 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1954.51NCBI
Spmip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81267,912,696 - 267,919,413 (-)NCBIGRCr8
mRatBN7.21257,926,555 - 257,934,873 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1257,926,388 - 257,934,399 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01279,937,414 - 279,944,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1279,937,727 - 279,945,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,300,619 - 287,307,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,297,710 - 265,301,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1253,581,567 - 253,589,090 (-)NCBICelera
Cytogenetic Map1q55NCBI
SPMIP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,531,408 - 128,539,427 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,536,747 - 128,544,821 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,244,452 - 113,252,155 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,675,032 - 116,683,079 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,675,032 - 116,683,079 (-)Ensemblpanpan1.1panPan2
SPMIP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,223,664 - 27,231,704 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,223,664 - 27,229,226 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,374,303 - 27,382,118 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,760,482 - 27,768,297 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,760,489 - 27,768,348 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,314,963 - 27,322,767 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,335,210 - 27,343,042 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,523,330 - 27,531,145 (-)NCBIUU_Cfam_GSD_1.0
Spmip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,950,394 - 18,957,160 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364866,604,359 - 6,609,370 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364866,604,214 - 6,609,290 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMIP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,470,751 - 109,478,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604870,725,756 - 70,734,540 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473729,920,316 - 29,925,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473729,919,266 - 29,933,142 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005648   ⟹   ENSCLAP00000005547
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543121,455,073 - 21,462,992 (-)Ensembl
RefSeq Acc Id: XM_005387855   ⟹   XP_005387912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543121,454,858 - 21,463,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013515844   ⟹   XP_013371298
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543121,454,858 - 21,462,992 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387912 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005547
  ENSCLAP00000005547.1
Reference Protein Sequences
RefSeq Acc Id: XP_005387912   ⟸   XM_005387855
- UniProtKB: A0A8C2UX48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371298   ⟸   XM_013515844
- UniProtKB: A0A8C2UX48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005547   ⟸   ENSCLAT00000005648


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005648 ENTREZGENE
  ENSCLAT00000005648.1 UniProtKB/TrEMBL
InterPro C10orf82-like UniProtKB/TrEMBL
NCBI Gene LOC102024150 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC681006 UniProtKB/TrEMBL
  PTHR47301 UniProtKB/TrEMBL
UniProt A0A8C2UX48 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-23 Spmip5  sperm microtubule inner protein 5  Spmip5  sperm associated microtubule inner protein 5  Symbol and/or name change 5135510 APPROVED
2023-05-09 Spmip5  sperm associated microtubule inner protein 5  CUNH10orf82  chromosome unknown C10orf82 homolog  Symbol and/or name change 5135510 APPROVED
2021-07-06 CUNH10orf82  chromosome unknown C10orf82 homolog  LOC102024150  chromosome unknown open reading frame, human C10orf82  Symbol and/or name change 5135510 APPROVED