Pacrg (parkin coregulated) - Rat Genome Database

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Gene: Pacrg (parkin coregulated) Chinchilla lanigera
Analyze
Symbol: Pacrg
Name: parkin coregulated
RGD ID: 9036899
Description: ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN protein localization (ortholog); spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); juvenile-onset Parkinson's disease (ortholog); lung adenocarcinoma (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); axonemal microtubule (ortholog); cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PARK2 co-regulated; PARK2 coregulated
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543918,153,227 - 18,663,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543918,152,719 - 18,664,026 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pacrg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543918,153,227 - 18,663,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543918,152,719 - 18,664,026 (-)NCBIChiLan1.0ChiLan1.0
PACRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386162,727,132 - 163,315,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6162,727,132 - 163,315,500 (+)EnsemblGRCh38hg38GRCh38
GRCh376163,148,164 - 163,736,532 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366163,068,154 - 163,656,514 (+)NCBINCBI36Build 36hg18NCBI36
Build 346163,118,574 - 163,706,934NCBI
Celera6163,877,766 - 164,466,475 (+)NCBICelera
Cytogenetic Map6q26NCBI
HuRef6160,600,313 - 161,189,795 (+)NCBIHuRef
CHM1_16163,410,401 - 163,998,862 (+)NCBICHM1_1
T2T-CHM13v2.06164,090,091 - 164,679,096 (+)NCBIT2T-CHM13v2.0
Pacrg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391710,621,938 - 11,059,078 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1710,621,941 - 11,059,198 (-)EnsemblGRCm39 Ensembl
GRCm381710,403,009 - 10,840,191 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1710,403,012 - 10,840,311 (-)EnsemblGRCm38mm10GRCm38
MGSCv371710,595,878 - 11,033,057 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361710,246,499 - 10,683,544 (-)NCBIMGSCv36mm8
Celera1710,441,554 - 10,880,474 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map177.8NCBI
Pacrg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,430,390 - 52,853,272 (+)NCBIGRCr8
mRatBN7.2149,882,671 - 50,305,564 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl149,882,630 - 50,305,430 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx150,601,669 - 51,024,246 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0156,586,115 - 57,008,760 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0150,677,192 - 51,099,755 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0150,070,273 - 50,491,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0152,077,687 - 52,078,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4144,374,745 - 44,836,465 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera145,667,177 - 46,086,043 (+)NCBICelera
Cytogenetic Map1q11NCBI
PACRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25182,912,865 - 183,553,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16180,814,329 - 181,454,813 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06160,677,517 - 161,261,350 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16165,678,258 - 166,258,530 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6165,679,339 - 166,258,025 (+)Ensemblpanpan1.1panPan2
PACRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1151,202,146 - 51,717,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl151,202,164 - 51,717,070 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,042,126 - 52,559,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0151,381,655 - 51,894,296 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl151,381,776 - 51,894,290 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1151,268,088 - 51,784,734 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0151,126,867 - 51,644,730 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0151,751,636 - 52,272,877 (+)NCBIUU_Cfam_GSD_1.0
Pacrg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946146,076,108 - 146,535,336 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648913,328,078 - 13,787,344 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648913,328,143 - 13,787,329 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14,967,224 - 5,465,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114,964,686 - 5,465,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.216,680,425 - 6,931,058 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PACRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11390,329,583 - 90,937,143 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604062,209,867 - 62,816,954 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacrg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462485599,475 - 430,105 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005390691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005390692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005390693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01036049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01036062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01262328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000011888   ⟹   ENSCLAP00000011750
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543918,153,227 - 18,663,780 (-)Ensembl
RefSeq Acc Id: XM_005390691   ⟹   XP_005390748
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543918,152,719 - 18,664,026 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390692   ⟹   XP_005390749
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543918,287,830 - 18,664,026 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005390693   ⟹   XP_005390750
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543918,352,912 - 18,664,026 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390748 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390749 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011750
  ENSCLAP00000011750.1
Reference Protein Sequences
RefSeq Acc Id: XP_005390748   ⟸   XM_005390691
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V8T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005390749   ⟸   XM_005390692
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005390750   ⟸   XM_005390693
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000011750   ⟸   ENSCLAT00000011888


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008105 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011888 ENTREZGENE
  ENSCLAT00000011888.1 UniProtKB/TrEMBL
InterPro Parkin_co-regulated_protein UniProtKB/TrEMBL
NCBI Gene Pacrg ENTREZGENE
PANTHER PARKIN COREGULATED GENE PROTEIN UniProtKB/TrEMBL
  PTHR21207 UniProtKB/TrEMBL
Pfam ParcG UniProtKB/TrEMBL
UniProt A0A8C2V8T8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-14 Pacrg  parkin coregulated    PARK2 coregulated  Symbol and/or name change 5135510 APPROVED
2016-08-03 Pacrg  PARK2 coregulated    PARK2 co-regulated  Symbol and/or name change 5135510 APPROVED