Rpgrip1l (RPGRIP1 like) - Rat Genome Database

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Gene: Rpgrip1l (RPGRIP1 like) Chinchilla lanigera
Analyze
Symbol: Rpgrip1l
Name: RPGRIP1 like
RGD ID: 9061228
Description: ENCODES a protein that exhibits thromboxane A2 receptor binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); cerebellum development (ortholog); ASSOCIATED WITH anencephaly (ortholog); Bardet-Biedl syndrome (ortholog); cerebellar ataxia (ortholog); FOUND IN axonemal microtubule (ortholog); axoneme (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RPGRIP1-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rpgrip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
RPGRIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381653,598,153 - 53,703,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1653,598,153 - 53,703,938 (-)EnsemblGRCh38hg38GRCh38
GRCh371653,632,065 - 53,737,771 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361652,191,319 - 52,295,272 (-)NCBINCBI36Build 36hg18NCBI36
Celera1638,148,632 - 38,252,362 (-)NCBICelera
Cytogenetic Map16q12.2NCBI
HuRef1639,520,935 - 39,624,598 (-)NCBIHuRef
CHM1_11655,040,948 - 55,144,907 (-)NCBICHM1_1
T2T-CHM13v2.01659,395,985 - 59,501,692 (-)NCBIT2T-CHM13v2.0
Rpgrip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,943,658 - 92,039,919 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl891,943,658 - 92,039,890 (-)EnsemblGRCm39 Ensembl
GRCm38891,217,030 - 91,313,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)EnsemblGRCm38mm10GRCm38
MGSCv37893,740,929 - 93,837,121 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36894,107,135 - 94,203,367 (-)NCBIMGSCv36mm8
Celera895,531,605 - 95,629,333 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.29NCBI
Rpgrip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81931,865,050 - 31,957,930 (+)NCBIGRCr8
mRatBN7.21915,692,189 - 15,785,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1915,692,150 - 15,785,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1917,381,318 - 17,473,822 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01922,575,853 - 22,668,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01925,521,979 - 25,614,595 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01917,115,266 - 17,208,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01928,182,466 - 28,274,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41916,859,114 - 16,952,054 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11916,866,903 - 16,953,660 (+)NCBI
Celera1915,599,054 - 15,691,270 (+)NCBICelera
Cytogenetic Map19p11NCBI
RPGRIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21863,030,811 - 63,133,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11668,949,407 - 69,052,432 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01633,836,361 - 33,939,265 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11652,920,790 - 53,023,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1652,920,796 - 53,023,174 (-)Ensemblpanpan1.1panPan2
RPGRIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,080,159 - 62,179,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,080,080 - 62,178,284 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,713,210 - 58,814,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0262,621,842 - 62,723,085 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl262,621,948 - 62,721,417 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,445,507 - 59,546,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0260,472,284 - 60,567,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,348,461 - 61,449,678 (+)NCBIUU_Cfam_GSD_1.0
Rpgrip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934953,267,379 - 53,369,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364756,215,475 - 6,321,618 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364756,219,187 - 6,321,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPGRIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl631,564,986 - 31,661,190 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1631,564,937 - 31,660,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2628,582,612 - 28,591,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPGRIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1539,388,632 - 39,487,223 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl539,387,107 - 39,487,092 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604736,894,183 - 36,995,212 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpgrip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247573,079,712 - 3,172,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247573,080,162 - 3,172,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000006577   ⟹   ENSCLAP00000006470
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000006578   ⟹   ENSCLAP00000006471
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)Ensembl
RefSeq Acc Id: XM_005388308   ⟹   XP_005388365
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,323,447 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388309   ⟹   XP_005388366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388310   ⟹   XP_005388367
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516223   ⟹   XP_013371677
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,323,447 - 11,423,981 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388365 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388366 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388367 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006470
  ENSCLAP00000006470.1
  ENSCLAP00000006471.1
RefSeq Acc Id: XP_005388366   ⟸   XM_005388309
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UWI9 (UniProtKB/TrEMBL),   A0A8C2UZB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005388367   ⟸   XM_005388310
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UWI9 (UniProtKB/TrEMBL),   A0A8C2UZB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005388365   ⟸   XM_005388308
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UWI9 (UniProtKB/TrEMBL),   A0A8C2UZB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371677   ⟸   XM_013516223
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZB8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000006471   ⟸   ENSCLAT00000006578
Ensembl Acc Id: ENSCLAP00000006470   ⟸   ENSCLAT00000006577
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004568 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006577 ENTREZGENE
  ENSCLAT00000006577.1 UniProtKB/TrEMBL
  ENSCLAT00000006578.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2-C2_1 UniProtKB/TrEMBL
  C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  RPGRIP1_C UniProtKB/TrEMBL
  RPGRIP1_fam UniProtKB/TrEMBL
NCBI Gene Rpgrip1l ENTREZGENE
PANTHER PTHR14240 UniProtKB/TrEMBL
  PTHR14240:SF4 UniProtKB/TrEMBL
Pfam C2-C2_1 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  RPGR1_C UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A8C2UWI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UZB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rpgrip1l  RPGRIP1 like    RPGRIP1-like  Symbol and/or name change 5135510 APPROVED