Rpgrip1l (RPGRIP1 like) - Rat Genome Database

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Gene: Rpgrip1l (RPGRIP1 like) Chinchilla lanigera
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Symbol: Rpgrip1l
Name: RPGRIP1 like
RGD ID: 9061228
Description: ENCODES a protein that exhibits thromboxane A2 receptor binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); cerebellum development (ortholog); ASSOCIATED WITH anencephaly (ortholog); cerebellar ataxia (ortholog); cerebellar disease (ortholog); FOUND IN axonemal microtubule (ortholog); axoneme (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: RPGRIP1-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Rpgrip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
RPGRIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1653,598,153 - 53,703,938 (-)EnsemblGRCh38hg38GRCh38
GRCh381653,598,153 - 53,703,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371653,632,065 - 53,737,771 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361652,191,319 - 52,295,272 (-)NCBINCBI36hg18NCBI36
Celera1638,148,632 - 38,252,362 (-)NCBI
Cytogenetic Map16q12.2NCBI
HuRef1639,520,935 - 39,624,598 (-)NCBIHuRef
CHM1_11655,040,948 - 55,144,907 (-)NCBICHM1_1
Rpgrip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,943,658 - 92,039,919 (-)NCBIGRCm39mm39
GRCm39 Ensembl891,943,658 - 92,039,890 (-)Ensembl
GRCm38891,217,030 - 91,313,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)EnsemblGRCm38mm10GRCm38
MGSCv37893,740,929 - 93,837,121 (-)NCBIGRCm37mm9NCBIm37
MGSCv36894,107,135 - 94,203,367 (-)NCBImm8
Celera895,531,605 - 95,629,333 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.29NCBI
Rpgrip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21915,692,189 - 15,785,083 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01917,115,266 - 17,208,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01928,182,466 - 28,274,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41916,859,114 - 16,952,054 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11916,866,903 - 16,953,660 (+)NCBI
Celera1915,599,054 - 15,691,270 (+)NCBICelera
Cytogenetic Map19p11NCBI
RPGRIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11652,920,790 - 53,023,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1652,920,796 - 53,023,174 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01633,836,361 - 33,939,265 (-)NCBIMhudiblu_PPA_v0panPan3
RPGRIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,080,159 - 62,179,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,080,080 - 62,178,284 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,713,210 - 58,814,422 (+)NCBI
ROS_Cfam_1.0262,621,842 - 62,723,085 (+)NCBI
UMICH_Zoey_3.1259,445,507 - 59,546,724 (+)NCBI
UNSW_CanFamBas_1.0260,472,284 - 60,567,340 (+)NCBI
UU_Cfam_GSD_1.0261,348,461 - 61,449,678 (+)NCBI
Rpgrip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934953,267,379 - 53,369,387 (+)NCBI
SpeTri2.0NW_0049364756,219,187 - 6,321,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPGRIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl631,564,986 - 31,661,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1631,564,937 - 31,660,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2628,582,612 - 28,591,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPGRIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1539,388,632 - 39,487,223 (-)NCBI
ChlSab1.1 Ensembl539,387,107 - 39,487,092 (-)Ensembl
Vero_WHO_p1.0NW_02366604736,894,183 - 36,995,212 (+)NCBI
Rpgrip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247573,080,162 - 3,172,750 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006577   ⟹   ENSCLAP00000006470
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006578   ⟹   ENSCLAP00000006471
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)Ensembl
RefSeq Acc Id: XM_005388308   ⟹   XP_005388365
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,323,447 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388309   ⟹   XP_005388366
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388310   ⟹   XP_005388367
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516223   ⟹   XP_013371677
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543311,323,447 - 11,423,981 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388365 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388366 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388367 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371677 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005388366   ⟸   XM_005388309
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388367   ⟸   XM_005388310
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388365   ⟸   XM_005388308
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371677   ⟸   XM_013516223
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000006471   ⟸   ENSCLAT00000006578
RefSeq Acc Id: ENSCLAP00000006470   ⟸   ENSCLAT00000006577


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004568 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000006470 ENTREZGENE
Ensembl Transcript ENSCLAT00000006577 ENTREZGENE
NCBI Gene Rpgrip1l ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rpgrip1l  RPGRIP1 like    RPGRIP1-like  Symbol and/or name change 5135510 APPROVED