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Gene: Arl13b (ARF like GTPase 13B) Chinchilla lanigera

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Symbol:

Arl13b

Name:

ARF like GTPase 13B (Ensembl:ADP ribosylation factor like GTPase 13B)

RGD ID:

9042612

Description:

INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH autosomal recessive thrombophilia due to protein S deficiency (ortholog); cystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); ciliary membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ADP ribosylation factor like GTPase 13B; ADP-ribosylation factor-like 13B; ADP-ribosylation factor-like protein 13B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	3,402,908 - 3,460,105 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	3,402,214 - 3,477,839 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive thrombophilia due to protein S deficiency (ISO)

cystic kidney disease (ISO)

genetic disease (ISO)

Joubert syndrome (ISO)

Joubert syndrome 1 (ISO)

Joubert syndrome 8 (ISO)

long QT syndrome (ISO)

neural tube defect (ISO)

obesity (ISO)

protein S deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

determination of left/right symmetry (ISO)

dorsal/ventral pattern formation (ISO)

formation of radial glial scaffolds (ISO)

heart looping (ISO)

interneuron migration from the subpallium to the cortex (ISO)

left/right axis specification (ISO)

neural tube patterning (ISO)

non-motile cilium assembly (ISO)

smoothened signaling pathway (ISO)

Cellular Component

axoneme (ISO)

ciliary basal body (ISO)

ciliary membrane (ISO)

cilium (ISO)

cytosol (ISO)

intercellular bridge (ISO)

microtubule cytoskeleton (ISO)

motile cilium (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Arl13b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	3,402,908 - 3,460,105 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	3,402,214 - 3,477,839 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARL13B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	93,980,155 - 94,055,678 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	93,980,139 - 94,055,678 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	93,698,999 - 93,774,522 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	95,181,672 - 95,256,813 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	95,181,671 - 95,256,811	NCBI
Celera	3	92,082,477 - 92,158,408 (+)	NCBI		Celera
Cytogenetic Map	3	q11.1-q11.2	NCBI
HuRef	3	91,061,683 - 91,137,139 (+)	NCBI		HuRef
CHM1_1	3	93,662,067 - 93,737,527 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	96,678,283 - 96,754,130 (+)	NCBI		T2T-CHM13v2.0

Arl13b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	62,613,671 - 62,667,418 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	62,614,048 - 62,667,403 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	62,793,308 - 62,847,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	62,793,685 - 62,847,040 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	62,793,515 - 62,846,866 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	62,735,945 - 62,789,253 (-)	NCBI		MGSCv36	mm8
Celera	16	63,102,388 - 63,155,607 (-)	NCBI		Celera
Cytogenetic Map	16	C1.3	NCBI
cM Map	16	36.43	NCBI

Arl13b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	13,597,538 - 13,663,681 (-)	NCBI		GRCr8
mRatBN7.2	11	150,100 - 217,103 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	150,955 - 217,197 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	8,747,109 - 8,813,116 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	1,540,368 - 1,606,375 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	645,150 - 711,155 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	1,122,567 - 1,188,209 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	1,122,567 - 1,188,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	1,111,829 - 1,181,765 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	13	160,428 - 223,413 (-)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI

ARL13B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	91,890,580 - 91,972,922 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	91,895,366 - 91,974,311 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	91,044,332 - 91,121,686 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	97,725,136 - 97,799,932 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	97,725,136 - 97,799,932 (+)	Ensembl	panpan1.1		panPan2

ARL13B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	1,698,360 - 1,762,846 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	1,698,363 - 1,761,641 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	1,878,107 - 1,942,635 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	1,798,026 - 1,862,534 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	1,798,051 - 1,862,531 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	1,707,188 - 1,771,378 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	1,742,070 - 1,806,566 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	1,967,145 - 2,031,460 (+)	NCBI		UU_Cfam_GSD_1.0

Arl13b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	155,334,820 - 155,399,714 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936666	116,264 - 177,989 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936666	115,964 - 179,639 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARL13B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	165,828,059 - 165,910,961 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	165,829,772 - 165,910,959 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

ARL13B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	86,648,924 - 86,722,006 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	86,651,076 - 86,721,948 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	79,960,967 - 80,033,874 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arl13b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624789	6,710,681 - 6,783,667 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624789	6,710,858 - 6,783,097 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01006858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01003091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01003439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000009287 ⟹ ENSCLAP00000009158

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	3,402,908 - 3,460,105 (-)	Ensembl

RefSeq Acc Id:

XM_005375514 ⟹ XP_005375571

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	3,402,214 - 3,477,839 (-)	NCBI

Sequence:

show sequence

CCGCGCCACGGAGCACGTCAGCGCGTTGTGCTGGCTGTTCTCCGGCGGGACGGCCGACCGCTGG
GCGTCCGCGCCCCGGGCTGCCGCGGCGTCGGGAGGAGGGTAGTGGTCCCCTGTGGCGGGTGGCG
CGCGGCGTGGGCTCGGCCAGTCGCCTTCCCGGCCTGCGCCTGTCCTCTGGGCCTGCCGCCTCGT
CGTCCGGCGCGTGCGGGCTCCCGGGGCGCCAGGCCGTCCCGCTGGGCTCGCATGGGCGGCGGCG
GGGGCGCGGCCCGCGATGCTCGGCCTCATGGCCGGTTGCTGCGGCCGGCTGCGGCGCTGGCGGG
AGCCCGTCAGAAAGGTGACTCTCGTGATGGTGGGACTGGACAATGCTGGTAAAACGGCAACAGC
GAAGGGGATCAAAGGAGAGCATCCTGAAGATGTGGCTCCCACAGTTGGATTTTCTAAAATTGAC
CTTAAACAAGGAAAGTTTGAGGTCACCATCTTTGATTTGGGAGGTGGAAAAAGAATTCGGGGGA
TTTGGAAGAATTACTACGCAGAGTCCTATGGGGTGATATTTGTTGTGGATTCCAGTGATGAAGA
GAGAATGGAAGAGACAAAGGAGACAATGTCAGAAGTGCTAAGACACCCGAGGATATCAGGAAAG
CCTATATTGGTGTTGGCAAATAAACAGGACAAGGAAGGGGCTTTGGGAGAAGCTGATGTGATTG
AATGTCTGTCTTTGGAAAAATTGGTCAATGAGCACAAGTGCCTGTGTCAGATAGAACCTTGTTC
GGCAGTCTTGGGGTATGGAAAGAAGATTGACAAGTCTATTAAAAAGGGCCTTTATTGGCTGCTA
CATATCATCGCCAGAGACTTTGAGACCTTGAATGAAAGGATCCAGAAGGACACAAGGGAACAGC
GAGCGCTGGAGGAACAGGAGAAGCGAGAAAGAGCTGAGCGAGTGCGAAAACTGCGAGAAGAAAG
AGAACAAAGAGAAGGAGAGCAAGCGGAGCTGGATGGAAGCAGCGGGGCTGATGACTTGGGCCCG
AGACCAGTTCCTGTGAACCCTTTCCAGCCCATCGCGTCTGTCATAATGGAGAATGAAAAGAAAC
TTGAAAAAGAGAAAAAGAAACAAACGACGGAAAAAGACAGTGACATTTGTCCCTTGCAACAGAA
AACGGAACATGAACAAACAGAAACACAGAGCCAGGCTAGTGACAATAGCCAAAGAAACAATGAA
TTTGAAGTAGTAGAAAATTATAAGGAGGCCTTAACACAGCAGTTGGAGGATGAAGATGAGACAG
ATCAGCGATCTTCAGAATCAGATAATAGTAAAAAGAAAACTAAGAAACTAAGAATGAAAAGGAG
TCACCGAGTAGAACCAGTTAACACAGACGACTCAACTCCTAAGAGTGCAACGCCGCCCCCACCA
CCCCCTCCTGTTGGCTGGGGAACCCCCAGAGTCACTAGACTTCCAAAACTTGAGCCTCTTGGTG
GAACACGTCATAATGATCTCCACGGGAAGCCGCTTCCTCCTCTGGCTGTGAGACAGAGACCCAG
TCGCGCCTCTCATGATGCGATCGCATAGCCGAGGTGCGGAGCGGCTCTCTGCGCGCAGCGAGCG
GACGGACCTCTTTCTCAAGGGAGAGAAACCTTGATCCCTGATGCCGGGGGCCGGACTGCCAGTG
ATTTTTAGTGAGGAGATGCGTAGCCAAGGACCAGTCCTGATAATGACTTCTCCATGTTCTTCGT
GGTTAAAGCAGAAAGGGAACAAAATGACTAATACATGGGATCAGCATTTGGACCAAGTTAGTGA
GACTTAATGTTGACTTTTGGTTCATACATCCCCTTCCTGGGTGTATTCCTGAGGAAACCTGAGA
ACCGATGGACTCTGCATAGCCTCCTTTGGTAGTCTGCATTTCTAAGTTAAACATTTTTCAAAGT
GCGTATGTATGAAACGGGAACATCTGGGAATTTATAACCTAGCTTTTTTTAAAAACTATTTTTG
TATTTTTCTAAAACTTTTTAAAGAAATTAGTATTACGTTGTGCACTTTTCTATAAATGCTTTGT
TTAAATTGTGTCTGGAAAAGTTGATATATTTGGTAGATATGAACTACCATAAACAAGAAATATT
TTATGGCTCAAGGTATGTTTTGTAATAACATTATTCTTGAACTGTATATCCTAACTTGACCTTT
AAAATAATGCCTTTTTAAAAAAACAGATTCTCTGATTTTTTTATTGTTTTATTTTTTTTTGAGC
CAGGGTCTATGCAGTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375571	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009158
	ENSCLAP00000009158.1

RefSeq Acc Id:

XP_005375571 ⟸ XM_005375514

- UniProtKB:

A0A8C2V2W3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLGLMAGCCGRLRRWREPVRKVTLVMVGLDNAGKTATAKGIKGEHPEDVAPTVGFSKIDLKQGK
FEVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVL
ANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIAR
DFETLNERIQKDTREQRALEEQEKRERAERVRKLREEREQREGEQAELDGSSGADDLGPRPVPV
NPFQPIASVIMENEKKLEKEKKKQTTEKDSDICPLQQKTEHEQTETQSQASDNSQRNNEFEVVE
NYKEALTQQLEDEDETDQRSSESDNSKKKTKKLRMKRSHRVEPVNTDDSTPKSATPPPPPPPVG
WGTPRVTRLPKLEPLGGTRHNDLHGKPLPPLAVRQRPSRASHDAIA

hide sequence

Ensembl Acc Id:

ENSCLAP00000009158 ⟸ ENSCLAT00000009287

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006379	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009287	ENTREZGENE
	ENSCLAT00000009287.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Ciliary_GTPase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/TrEMBL
NCBI Gene	Arl13b	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B	UniProtKB/TrEMBL
Pfam	Arf	UniProtKB/TrEMBL
PRINTS	SAR1GTPBP	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
SMART	ARF	UniProtKB/TrEMBL
	SAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C2V2W3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-09-25	Arl13b	ARF like GTPase 13B	Arl13b	ADP ribosylation factor like GTPase 13B	Symbol and/or name change	5135510	APPROVED
2016-08-16	Arl13b	ADP ribosylation factor like GTPase 13B		ADP-ribosylation factor-like 13B	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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