Bbof1 (basal body orientation factor 1)

Gene: Bbof1 (basal body orientation factor 1) Chinchilla lanigera

Analyze

Symbol:

Bbof1

Name:

basal body orientation factor 1

RGD ID:

8813050

Description:

INVOLVED IN flagellated sperm motility (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Methylmalonate Semialdehyde Dehydrogenase Deficiency (ortholog); FOUND IN axoneme (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

basal body-orientation factor 1; Ccdc176; coiled-coil domain containing 176

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955523	1,363,246 - 1,405,022 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Methylmalonate Semialdehyde Dehydrogenase Deficiency (ISO)

polycystic ovary syndrome (ISO)

primary ciliary dyskinesia 16 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (ISO)

sperm axoneme assembly (ISO)

Cellular Component

axoneme (ISO)

sperm flagellum (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Bbof1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955523	1,363,246 - 1,405,022 (-)	NCBI	ChiLan1.0	ChiLan1.0

BBOF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,019,349 - 74,082,864 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,019,349 - 74,082,863 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	74,486,052 - 74,532,795 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,586,210 - 73,602,548 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	73,586,209 - 73,602,546	NCBI
Celera	14	54,523,011 - 54,569,747 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	54,652,712 - 54,699,536 (+)	NCBI		HuRef
CHM1_1	14	74,425,612 - 74,472,265 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	68,227,014 - 68,286,031 (+)	NCBI		T2T-CHM13v2.0

Bbof1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,455,243 - 84,488,279 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,455,845 - 84,489,661 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	84,408,461 - 84,441,428 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,409,071 - 84,442,887 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	85,750,018 - 85,774,730 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,298,862 - 85,323,528 (+)	NCBI		MGSCv36	mm8
Celera	12	85,864,581 - 85,889,293 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.2	NCBI

Bbof1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,786,363 - 109,812,153 (+)	NCBI		GRCr8
mRatBN7.2	6	104,055,246 - 104,081,036 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,055,241 - 104,082,071 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	104,216,998 - 104,242,810 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,516,082 - 104,541,894 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,885,666 - 103,911,478 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,123,855 - 108,149,613 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,123,816 - 108,149,607 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,396,784 - 117,422,545 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,473,030 - 108,498,836 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	101,883,280 - 101,909,048 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

BBOF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	75,109,193 - 75,173,872 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	74,325,700 - 74,390,380 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,578,549 - 54,637,331 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,434,030 - 73,489,974 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	73,434,030 - 73,478,079 (+)	Ensembl	panpan1.1		panPan2

BBOF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,245,995 - 47,286,650 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,246,126 - 47,285,518 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	46,930,305 - 46,970,953 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,473,218 - 47,514,392 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,472,909 - 47,514,397 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,142,691 - 47,183,591 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,160,729 - 47,201,320 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,551,019 - 47,592,172 (+)	NCBI		UU_Cfam_GSD_1.0

Bbof1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	28,743,127 - 28,787,110 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936488	3,281,863 - 3,317,680 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BBOF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,316,711 - 97,368,049 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	97,316,630 - 97,367,526 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,070,780 - 103,122,015 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BBOF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	51,234,618 - 51,279,537 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	51,234,663 - 51,280,595 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	39,458,359 - 39,506,240 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bbof1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	27,517,617 - 27,568,703 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01068515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01068516	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01032015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01084330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005409398 ⟹ XP_005409455

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,366,743 - 1,405,022 (-)	NCBI

Sequence:

show sequence

GGGCGGCCGGCGCGGAGGGCCGAACACGCAGCGGGCGCCGCGCCTCCCGCTGAGGGGTCCGCGC
CGCACGAAGGCGAAGCCCGGCTGGCAGGGCGCCGCGCGCCGCCCGGGGTGCTCGGCTCCCACTC
CCCGCCCCTGCCCGTCCCACACCCGGGAAGGCACAGCGGCGGCTCGTTCACTCACCGCGCCCGC
CCCACTGGCGCGGCACCGCCGCCGGCCCCGGCGAGATGAGCGCTGCGCCCCGCTCGGAGACGGA
GACGGCGACGGCGCGGCCACGTCACGGCGCATGCGCTCTCCGCGCGCCGGCGCACCGCCCAGGG
GCGCGCCTCGCCGGAGCGCTCGTTTCCTGGGAGACCGAGCGGGCCCTGGCTGACGCGGCCGGGC
GACCCGAACAGCCAAGATGCCGCCGAAGGGAAAGGACAAAAGGAAAGGCAAAAGCAAAGGCAAG
GACCCGAAGAAATCAGGAAAAACAGATGAGTCTGTCTCTGTGGTGGAGCAAGCCAAGGCCAATG
CCACCCTGTGGGAGAGCAGGCTGGAGGTCACGGAGCTCTCTAGGATCGAATACCGTGATATGTC
TCGCAGACTGGCCAAGAGTAACGAAGACCTTAAGAAGCAGCAGTATAAAATGGAGAAAGACACA
ATGTCTGTGTTAAGCTATATGAAGAGGCAGGAGCAAGACAAAGATAATGTGATTGAAAAACTGA
AACAGCAGCTGGTTGAAACAAAGGAAAAAGCCCAAGAGGAGAAGGAAAAACTGGGACAAAGGTA
TGCTATGCAAATAGGTGAGCTGGAGGCACAGTTCCATCAAAAAGCCAAAGAAATTGGCATGATT
CAGACAGAGCTGAAAACAATAAAACAATTCCAGAAGAAAAAAATTCAAATGGAGAAAGAATTAG
ACGATCTGAAAGAAAATTTAAGGGTGACAGAGAAGAAACATCAGGAGACTCTTAGAAGAATGGA
AGGCCGATTTTTTGAAGAAAAGCACCGGCTGGAACAAGAGGCAGAGAAGAAGATAATAATGCTG
GCAGAGAAAGCGCACCATGAAGCTGTGGTGCAATTGAATGCTGTTGGAAGAAATGTTTTTAAAG
AGAATGTTTATCTCCAGAAAGCTCTGGCATACCACCTGAAGGAAGCTGATGCTCTACAAAAAAC
CTCCCAGAATTTGAAAGATAGTCATGCCAGTCTGTTACATCAAAAGGAGACCAATGAACTACTG
ATTAAGGAGAAAATTATGCAACTTACCCAGCAAAGAACACAAATCCACATCCTTCGGAAGAAGG
TGATAGACTTGGAGAATGCTCTGAGTTTTATGGCCAGAGAGTTTGAGACTGAAGTTTTGAAAGT
GAAGCAACAGGCAGTGATAGAGAACCAGGCAGGTCAAGTAGAAATTGACAAGCTGCAGCAGCTG
CTTCAGATGAAGGACAGGGAAATGAACCGAGTGAAGAAGCTGGCCAAGAACATACTGGACGAGA
GAACTGAAGTGGAAAGTTTCTTTCTAGATGCTCTGCATGAAGTGAAGCAGCAGATCCTGGTCAG
CAGGAAGCATTATAAGCAGATAGCACAAGCTGCTTTCAACTTAAAAATGAGAACGGCGTGTGCG
GGAAAAACACAGTATCCGCAGATCAGGACCTTTGATGGCAGAGAACACAGCACCAACAGTGTGA
ATCAGGATCTTATGGAGGCTGAAAAATGGACAAGTACTCAAAAAAATGTGGATATTGGAGATTT
GACTTGGGAGCAGAAGGAGAAAGTCTTGAGATTGCTCTTTGCAAAAATGAATGGTTTTGTTCCT
AGGAATAAAAGTAAGCTTCAAGATCAGACAGATGAAGTTGTGCCTCAGGATCAGACAGATGAAA
GTAAGCTTCAAGATCAGACAGATGAAAGTAAGCTTCGAGATCAGACAGATGAAGTTGAGCTTCA
AGATCAGACAGATGAAAGCAAGCTTCAAGATCAGACATTCATCACTCAGCAAGTTCCAATCTCA
GACTCTGAAAAGTCACTACCCAGCATTCTGACGGGATCACAGGAGTCCAACATGGTGCAGGCAG
AACCGCTGTGCTGCTCATGAGGCCCTCTGTCTGCACCAGTCAATGTCAAACCCTAGTTGCCATT
TCACTCTGAAATGAAAACTCAGCCAGGAGCATCAGGGTGCGAGCACTGGACAGTGTAGCCTGTG
AAACCTGCGGAGCGCTGCATCCCAGTGTCACGCACGTGTCACGAGCCGACGTCCGCAGACCTTC
TCAACGCTGCCTCCCGCTTCCTGTCTGAAGTTTACACCCCGGCCTCAGCTGAGTGGCACAACGC
TCACCTCACAGCAATGCTGGGAGAGAGTCGTACACCACGTGAAATTACCCTACTGAGTAGCTCC
GATCCAACCATGGTTGTCTTTTACCTCCTTCCCATGAGGAGAGAGGAATAAAGGCGTGATACGT
GTA

hide sequence

RefSeq Acc Id:

XM_005409399 ⟹ XP_005409456

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,363,246 - 1,405,022 (-)	NCBI

Sequence:

show sequence

GGGCGGCCGGCGCGGAGGGCCGAACACGCAGCGGGCGCCGCGCCTCCCGCTGAGGGGTCCGCGC
CGCACGAAGGCGAAGCCCGGCTGGCAGGGCGCCGCGCGCCGCCCGGGGTGCTCGGCTCCCACTC
CCCGCCCCTGCCCGTCCCACACCCGGGAAGGCACAGCGGCGGCTCGTTCACTCACCGCGCCCGC
CCCACTGGCGCGGCACCGCCGCCGGCCCCGGCGAGATGAGCGCTGCGCCCCGCTCGGAGACGGA
GACGGCGACGGCGCGGCCACGTCACGGCGCATGCGCTCTCCGCGCGCCGGCGCACCGCCCAGGG
GCGCGCCTCGCCGGAGCGCTCGTTTCCTGGGAGACCGAGCGGGCCCTGGCTGACGCGGCCGGGC
GACCCGAACAGCCAAGATGCCGCCGAAGGGAAAGGACAAAAGGAAAGGCAAAAGCAAAGGCAAG
GACCCGAAGAAATCAGGAAAAACAGATGAGTCTGTCTCTGTGGTGGAGCAAGCCAAGGCCAATG
CCACCCTGTGGGAGAGCAGGCTGGAGGTCACGGAGCTCTCTAGGATCGAATACCGTGATATGTC
TCGCAGACTGGCCAAGAGTAACGAAGACCTTAAGAAGCAGCAGTATAAAATGGAGAAAGACACA
ATGTCTGTGTTAAGCTATATGAAGAGGCAGGAGCAAGACAAAGATAATGTGATTGAAAAACTGA
AACAGCAGCTGGTTGAAACAAAGGAAAAAGCCCAAGAGGAGAAGGAAAAACTGGGACAAAGGTA
TGCTATGCAAATAGGTGAGCTGGAGGCACAGTTCCATCAAAAAGCCAAAGAAATTGGCATGATT
CAGACAGAGCTGAAAACAATAAAACAATTCCAGAAGAAAAAAATTCAAATGGAGAAAGAATTAG
ACGATCTGAAAGAAAATTTAAGGGTGACAGAGAAGAAACATCAGGAGACTCTTAGAAGAATGGA
AGGCCGATTTTTTGAAGAAAAGCACCGGCTGGAACAAGAGGCAGAGAAGAAGATAATAATGCTG
GCAGAGAAAGCGCACCATGAAGCTGTGGTGCAATTGAATGCTGTTGGAAGAAATGTTTTTAAAG
AGAATGTTTATCTCCAGAAAGCTCTGGCATACCACCTGAAGGAAGCTGATGCTCTACAAAAAAC
CTCCCAGAATTTGAAAGATAGTCATGCCAGTCTGTTACATCAAAAGGAGACCAATGAACTACTG
ATTAAGGAGAAAATTATGCAACTTACCCAGCAAAGAACACAAATCCACATCCTTCGGAAGAAGG
TGATAGACTTGGAGAATGCTCTGAGTTTTATGGCCAGAGAGTTTGAGACTGAAGTTTTGAAAGT
GAAGCAACAGGCAGTGATAGAGAACCAGGCAGGTCAAGTAGAAATTGACAAGCTGCAGCAGCTG
CTTCAGATGAAGGACAGGGAAATGAACCGAGTGAAGAAGCTGGCCAAGAACATACTGGACGAGA
GAACTGAAGTGGAAAGTTTCTTTCTAGATGCTCTGCATGAAGTGAAGCAGCAGATCCTGGTCAG
CAGGAAGCATTATAAGCAGATAGCACAAGCTGCTTTCAACTTAAAAATGAGAACGGCGTGTGCG
GGAAAAACACAGTATCCGCAGATCAGGACCTTTGATGGCAGAGAACACAGCACCAACAGTGTGA
ATCAGGATCTTATGGAGGCTGAAAAATGGACAAGTACTCAAAAAAATGTGGATATTGGAGATTT
GACTTGGGAGCAGAAGGAGAAAGTCTTGAGATTGCTCTTTGCAAAAATGAATGGTTTTGTTCCT
AGGAATAAAAGTAAGCTTCAAGATCAGACAGATGAAGTTGTGCCTCAGGATCAGACAGATGAAA
GTAAGCTTCAAGATCAGACAGATGAAAGTAAGCTTCGAGATCAGACAGATGAAGTTGAGCTTCA
AGATCAGACAGATGAAAGCAAGCTTCAAGATCAGACATTCATCACTCAGCAAGTTCCAATCTCA
GACTCTGAAAAGTCACTACCCAGCATTCTGACGGGATCACAGGAGTCCAACATGGGGACTTTCT
GAGAAAGCTGTGGAACAGTGTATGAGACCACAGAAGCTGTTGACATGCGCTTCTCTGCAGGATC
CTCGCTACTGAATATATTCAAGAAGTTTTCTTAAAGGGAAAAGTACGTAACTCA

hide sequence

RefSeq Acc Id:

XM_005409400 ⟹ XP_005409457

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,366,743 - 1,405,022 (-)	NCBI

Sequence:

show sequence

GGGCGGCCGGCGCGGAGGGCCGAACACGCAGCGGGCGCCGCGCCTCCCGCTGAGGGGTCCGCGC
CGCACGAAGGCGAAGCCCGGCTGGCAGGGCGCCGCGCGCCGCCCGGGGTGCTCGGCTCCCACTC
CCCGCCCCTGCCCGTCCCACACCCGGGAAGGCACAGCGGCGGCTCGTTCACTCACCGCGCCCGC
CCCACTGGCGCGGCACCGCCGCCGGCCCCGGCGAGATGAGCGCTGCGCCCCGCTCGGAGACGGA
GACGGCGACGGCGCGGCCACGTCACGGCGCATGCGCTCTCCGCGCGCCGGCGCACCGCCCAGGG
GCGCGCCTCGCCGGAGCGCTCGTTTCCTGGGAGACCGAGCGGGCCCTGGCTGACGCGGCCGGGC
GACCCGAACAGCCAAGATGCCGCCGAAGGGAAAGGACAAAAGGAAAGGCAAAAGCAAAGGCAAG
GACCCGAAGAAATCAGGAAAAACAGATGAGTCTGTCTCTGTGGTGGAGCAAGCCAAGGCCAATG
CCACCCTGTGGGAGAGCAGGCTGGAGGTCACGGAGCTCTCTAGGATCGAATACCGTGATATGTC
TCGCAGACTGGCCAAGAGTAACGAAGACCTTAAGAAGCAGCAGTATAAAATGGAGAAAGACACA
ATGTCTGTGTTAAGCTATATGAAGAGGCAGGAGCAAGACAAAGATAATGTGATTGAAAAACTGA
AACAGCAGCTGGTTGAAACAAAGGAAAAAGCCCAAGAGGAGAAGGAAAAACTGGGACAAAGGTA
TGCTATGCAAATAGGTGAGCTGGAGGCACAGTTCCATCAAAAAGCCAAAGAAATTGGCATGATT
CAGACAGAGCTGAAAACAATAAAACAATTCCAGAAGAAAAAAATTCAAATGGAGAAAGAATTAG
ACGATCTGAAAGAAAATTTAAGGGTGACAGAGAAGAAACATCAGGAGACTCTTAGAAGAATGGA
AGGCCGATTTTTTGAAGAAAAGCACCGGCTGGAACAAGAGGCAGAGAAGAAGATAATAATGCTG
GCAGAGAAAGCGCACCATGAAGCTGTGGTGCAATTGAATGCTGTTGGAAGAAATGTTTTTAAAG
AGAATGTTTATCTCCAGAAAGCTCTGGCATACCACCTGAAGGAAGCTGATGCTCTACAAAAAAC
CTCCCAGAATTTGAAAGATAGTCATGCCAGTCTGTTACATCAAAAGGAGACCAATGAACTACTG
ATTAAGGAGAAAATTATGCAACTTACCCAGCAAAGAACACAAATCCACATCCTTCGGAAGAAGG
TGATAGACTTGGAGAATGCTCTGAGTTTTATGGCCAGAGAGTTTGAGACTGAAGTTTTGAAAGT
GAAGCAACAGGCAGTGATAGAGAACCAGGCAGGTCAAGTAGAAATTGACAAGCTGCAGCAGCTG
CTTCAGATGAAGGACAGGGAAATGAACCGAGTGAAGAAGCTGGCCAAGAACATACTGGACGAGA
GAACTGAAGTGGAAAGTTTCTTTCTAGATGCTCTGCATGAAGTGAAGCAGCAGATCCTGGTCAG
CAGGAAGCATTATAAGCAGATAGCACAAGCTGCTTTCAACTTAAAAATGAGAACGGCGTGTGCG
GGAAAAACACAGTATCCGCAGATCAGGACCTTTGATGGCAGAGAACACAGCACCAACAGTGTGA
ATCAGGATCTTATGGAGGCTGAAAAATGGAATAAAAGTAAGCTTCAAGATCAGACAGATGAAGT
TGTGCCTCAGGATCAGACAGATGAAAGTAAGCTTCAAGATCAGACAGATGAAAGTAAGCTTCGA
GATCAGACAGATGAAGTTGAGCTTCAAGATCAGACAGATGAAAGCAAGCTTCAAGATCAGACAT
TCATCACTCAGCAAGTTCCAATCTCAGACTCTGAAAAGTCACTACCCAGCATTCTGACGGGATC
ACAGGAGTCCAACATGGTGCAGGCAGAACCGCTGTGCTGCTCATGAGGCCCTCTGTCTGCACCA
GTCAATGTCAAACCCTAGTTGCCATTTCACTCTGAAATGAAAACTCAGCCAGGAGCATCAGGGT
GCGAGCACTGGACAGTGTAGCCTGTGAAACCTGCGGAGCGCTGCATCCCAGTGTCACGCACGTG
TCACGAGCCGACGTCCGCAGACCTTCTCAACGCTGCCTCCCGCTTCCTGTCTGAAGTTTACACC
CCGGCCTCAGCTGAGTGGCACAACGCTCACCTCACAGCAATGCTGGGAGAGAGTCGTACACCAC
GTGAAATTACCCTACTGAGTAGCTCCGATCCAACCATGGTTGTCTTTTACCTCCTTCCCATGAG
GAGAGAGGAATAAAGGCGTGATACGTGTA

hide sequence

RefSeq Acc Id:

XM_013507127 ⟹ XP_013362581

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,366,743 - 1,405,022 (-)	NCBI

Sequence:

show sequence

GGGCGGCCGGCGCGGAGGGCCGAACACGCAGCGGGCGCCGCGCCTCCCGCTGAGGGGTCCGCGC
CGCACGAAGGCGAAGCCCGGCTGGCAGGGCGCCGCGCGCCGCCCGGGGTGCTCGGCTCCCACTC
CCCGCCCCTGCCCGTCCCACACCCGGGAAGGCACAGCGGCGGCTCGTTCACTCACCGCGCCCGC
CCCACTGGCGCGGCACCGCCGCCGGCCCCGGCGAGATGAGCGCTGCGCCCCGCTCGGAGACGGA
GACGGCGACGGCGCGGCCACGTCACGGCGCATGCGCTCTCCGCGCGCCGGCGCACCGCCCAGGG
GCGCGCCTCGCCGGAGCGCTCGTTTCCTGGGAGACCGAGCGGGCCCTGGCTGACGCGGCCGGGC
GACCCGAACAGCCAAGATGCCGCCGAAGGGAAAGGACAAAAGGAAAGGCAAAAGCAAAGGCAAG
GACCCGAAGAAATCAGGAAAAACAGATGAGTCTGTCTCTGTGGTGGAGCAAGCCAAGGCCAATG
CCACCCTGTGGGAGAGCAGGCTGGAGGTCACGGAGCTCTCTAGGATCGAATACCGTGATATGTC
TCGCAGACTGGCCAAGAGTAACGAAGACCTTAAGAAGCAGCAGTATAAAATGGAGAAAGACACA
ATGTCTGTGTTAAGCTATATGAAGAGGCAGGAGCAAGACAAAGATAATGTGATTGAAAAACTGA
AACAGCAGCTGGTTGAAACAAAGGAAAAAGCCCAAGAGGAGAAGGAAAAACTGCTGAAAGAAAA
TTTAAGGGTGACAGAGAAGAAACATCAGGAGACTCTTAGAAGAATGGAAGGCCGATTTTTTGAA
GAAAAGCACCGGCTGGAACAAGAGGCAGAGAAGAAGATAATAATGCTGGCAGAGAAAGCGCACC
ATGAAGCTGTGGTGCAATTGAATGCTGTTGGAAGAAATGTTTTTAAAGAGAATGTTTATCTCCA
GAAAGCTCTGGCATACCACCTGAAGGAAGCTGATGCTCTACAAAAAACCTCCCAGAATTTGAAA
GATAGTCATGCCAGTCTGTTACATCAAAAGGAGACCAATGAACTACTGATTAAGGAGAAAATTA
TGCAACTTACCCAGCAAAGAACACAAATCCACATCCTTCGGAAGAAGGTGATAGACTTGGAGAA
TGCTCTGAGTTTTATGGCCAGAGAGTTTGAGACTGAAGTTTTGAAAGTGAAGCAACAGGCAGTG
ATAGAGAACCAGGCAGGTCAAGTAGAAATTGACAAGCTGCAGCAGCTGCTTCAGATGAAGGACA
GGGAAATGAACCGAGTGAAGAAGCTGGCCAAGAACATACTGGACGAGAGAACTGAAGTGGAAAG
TTTCTTTCTAGATGCTCTGCATGAAGTGAAGCAGCAGATCCTGGTCAGCAGGAAGCATTATAAG
CAGATAGCACAAGCTGCTTTCAACTTAAAAATGAGAACGGCGTGTGCGGGAAAAACACAGTATC
CGCAGATCAGGACCTTTGATGGCAGAGAACACAGCACCAACAGTGTGAATCAGGATCTTATGGA
GGCTGAAAAATGGACAAGTACTCAAAAAAATGTGGATATTGGAGATTTGACTTGGGAGCAGAAG
GAGAAAGTCTTGAGATTGCTCTTTGCAAAAATGAATGGTTTTGTTCCTAGGAATAAAAGTAAGC
TTCAAGATCAGACAGATGAAGTTGTGCCTCAGGATCAGACAGATGAAAGTAAGCTTCAAGATCA
GACAGATGAAAGTAAGCTTCGAGATCAGACAGATGAAGTTGAGCTTCAAGATCAGACAGATGAA
AGCAAGCTTCAAGATCAGACATTCATCACTCAGCAAGTTCCAATCTCAGACTCTGAAAAGTCAC
TACCCAGCATTCTGACGGGATCACAGGAGTCCAACATGGTGCAGGCAGAACCGCTGTGCTGCTC
ATGAGGCCCTCTGTCTGCACCAGTCAATGTCAAACCCTAGTTGCCATTTCACTCTGAAATGAAA
ACTCAGCCAGGAGCATCAGGGTGCGAGCACTGGACAGTGTAGCCTGTGAAACCTGCGGAGCGCT
GCATCCCAGTGTCACGCACGTGTCACGAGCCGACGTCCGCAGACCTTCTCAACGCTGCCTCCCG
CTTCCTGTCTGAAGTTTACACCCCGGCCTCAGCTGAGTGGCACAACGCTCACCTCACAGCAATG
CTGGGAGAGAGTCGTACACCACGTGAAATTACCCTACTGAGTAGCTCCGATCCAACCATGGTTG
TCTTTTACCTCCTTCCCATGAGGAGAGAGGAATAAAGGCGTGATACGTGTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409455	(Get FASTA)	NCBI Sequence Viewer
	XP_005409456	(Get FASTA)	NCBI Sequence Viewer
	XP_005409457	(Get FASTA)	NCBI Sequence Viewer
	XP_013362581	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005409456 ⟸ XM_005409399

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPPKGKDKRKGKSKGKDPKKSGKTDESVSVVEQAKANATLWESRLEVTELSRIEYRDMSRRLAK
SNEDLKKQQYKMEKDTMSVLSYMKRQEQDKDNVIEKLKQQLVETKEKAQEEKEKLGQRYAMQIG
ELEAQFHQKAKEIGMIQTELKTIKQFQKKKIQMEKELDDLKENLRVTEKKHQETLRRMEGRFFE
EKHRLEQEAEKKIIMLAEKAHHEAVVQLNAVGRNVFKENVYLQKALAYHLKEADALQKTSQNLK
DSHASLLHQKETNELLIKEKIMQLTQQRTQIHILRKKVIDLENALSFMAREFETEVLKVKQQAV
IENQAGQVEIDKLQQLLQMKDREMNRVKKLAKNILDERTEVESFFLDALHEVKQQILVSRKHYK
QIAQAAFNLKMRTACAGKTQYPQIRTFDGREHSTNSVNQDLMEAEKWTSTQKNVDIGDLTWEQK
EKVLRLLFAKMNGFVPRNKSKLQDQTDEVVPQDQTDESKLQDQTDESKLRDQTDEVELQDQTDE
SKLQDQTFITQQVPISDSEKSLPSILTGSQESNMGTF

hide sequence

RefSeq Acc Id:

XP_005409457 ⟸ XM_005409400

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPPKGKDKRKGKSKGKDPKKSGKTDESVSVVEQAKANATLWESRLEVTELSRIEYRDMSRRLAK
SNEDLKKQQYKMEKDTMSVLSYMKRQEQDKDNVIEKLKQQLVETKEKAQEEKEKLGQRYAMQIG
ELEAQFHQKAKEIGMIQTELKTIKQFQKKKIQMEKELDDLKENLRVTEKKHQETLRRMEGRFFE
EKHRLEQEAEKKIIMLAEKAHHEAVVQLNAVGRNVFKENVYLQKALAYHLKEADALQKTSQNLK
DSHASLLHQKETNELLIKEKIMQLTQQRTQIHILRKKVIDLENALSFMAREFETEVLKVKQQAV
IENQAGQVEIDKLQQLLQMKDREMNRVKKLAKNILDERTEVESFFLDALHEVKQQILVSRKHYK
QIAQAAFNLKMRTACAGKTQYPQIRTFDGREHSTNSVNQDLMEAEKWNKSKLQDQTDEVVPQDQ
TDESKLQDQTDESKLRDQTDEVELQDQTDESKLQDQTFITQQVPISDSEKSLPSILTGSQESNM
VQAEPLCCS

hide sequence

RefSeq Acc Id:

XP_005409455 ⟸ XM_005409398

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPPKGKDKRKGKSKGKDPKKSGKTDESVSVVEQAKANATLWESRLEVTELSRIEYRDMSRRLAK
SNEDLKKQQYKMEKDTMSVLSYMKRQEQDKDNVIEKLKQQLVETKEKAQEEKEKLGQRYAMQIG
ELEAQFHQKAKEIGMIQTELKTIKQFQKKKIQMEKELDDLKENLRVTEKKHQETLRRMEGRFFE
EKHRLEQEAEKKIIMLAEKAHHEAVVQLNAVGRNVFKENVYLQKALAYHLKEADALQKTSQNLK
DSHASLLHQKETNELLIKEKIMQLTQQRTQIHILRKKVIDLENALSFMAREFETEVLKVKQQAV
IENQAGQVEIDKLQQLLQMKDREMNRVKKLAKNILDERTEVESFFLDALHEVKQQILVSRKHYK
QIAQAAFNLKMRTACAGKTQYPQIRTFDGREHSTNSVNQDLMEAEKWTSTQKNVDIGDLTWEQK
EKVLRLLFAKMNGFVPRNKSKLQDQTDEVVPQDQTDESKLQDQTDESKLRDQTDEVELQDQTDE
SKLQDQTFITQQVPISDSEKSLPSILTGSQESNMVQAEPLCCS

hide sequence

RefSeq Acc Id:

XP_013362581 ⟸ XM_013507127

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPPKGKDKRKGKSKGKDPKKSGKTDESVSVVEQAKANATLWESRLEVTELSRIEYRDMSRRLAK
SNEDLKKQQYKMEKDTMSVLSYMKRQEQDKDNVIEKLKQQLVETKEKAQEEKEKLLKENLRVTE
KKHQETLRRMEGRFFEEKHRLEQEAEKKIIMLAEKAHHEAVVQLNAVGRNVFKENVYLQKALAY
HLKEADALQKTSQNLKDSHASLLHQKETNELLIKEKIMQLTQQRTQIHILRKKVIDLENALSFM
AREFETEVLKVKQQAVIENQAGQVEIDKLQQLLQMKDREMNRVKKLAKNILDERTEVESFFLDA
LHEVKQQILVSRKHYKQIAQAAFNLKMRTACAGKTQYPQIRTFDGREHSTNSVNQDLMEAEKWT
STQKNVDIGDLTWEQKEKVLRLLFAKMNGFVPRNKSKLQDQTDEVVPQDQTDESKLQDQTDESK
LRDQTDEVELQDQTDESKLQDQTFITQQVPISDSEKSLPSILTGSQESNMVQAEPLCCS

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Ccdc176	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Bbof1	basal body orientation factor 1	Ccdc176	coiled-coil domain containing 176	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD