Spag17 (sperm associated antigen 17) - Rat Genome Database

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Gene: Spag17 (sperm associated antigen 17) Chinchilla lanigera
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Symbol: Spag17
Name: sperm associated antigen 17
RGD ID: 8750454
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Spermatogenic Failure 55 (ortholog); FOUND IN axonemal central apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sperm-associated antigen 17
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Spag17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBIChiLan1.0ChiLan1.0
SPAG17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1117,953,590 - 118,185,228 (-)EnsemblGRCh38hg38GRCh38
GRCh381117,953,590 - 118,185,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371118,496,213 - 118,727,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,297,811 - 118,529,357 (-)NCBINCBI36hg18NCBI36
Celera1116,723,952 - 116,955,535 (-)NCBI
Cytogenetic Map1p12NCBI
HuRef1116,352,708 - 116,584,124 (-)NCBIHuRef
CHM1_11118,611,575 - 118,843,130 (-)NCBICHM1_1
Spag17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39399,792,653 - 100,050,638 (+)NCBIGRCm39mm39
GRCm39 Ensembl399,792,722 - 100,050,638 (+)Ensembl
GRCm38399,885,417 - 100,143,322 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl399,885,406 - 100,143,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv37399,689,340 - 99,947,245 (+)NCBIGRCm37mm9NCBIm37
MGSCv363100,014,493 - 100,271,849 (+)NCBImm8
Celera3102,093,645 - 102,348,668 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Spag17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22187,264,004 - 187,511,061 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2187,264,009 - 187,510,501 (+)Ensembl
Rnor_6.02202,159,659 - 202,452,361 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2202,200,797 - 202,443,026 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02221,837,514 - 221,849,735 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,858,583 - 221,903,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02221,623,554 - 221,784,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42194,845,206 - 195,089,225 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2179,716,884 - 179,959,180 (+)NCBICelera
Cytogenetic Map2q34NCBI
SPAG17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11119,335,369 - 119,556,711 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0184,339,906 - 84,571,723 (+)NCBIMhudiblu_PPA_v0panPan3
SPAG17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,248,136 - 55,468,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,248,137 - 55,467,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,891,599 - 55,114,823 (-)NCBI
ROS_Cfam_1.01756,127,507 - 56,346,757 (-)NCBI
UMICH_Zoey_3.11755,161,427 - 55,381,719 (-)NCBI
UNSW_CanFamBas_1.01755,199,577 - 55,419,614 (-)NCBI
UU_Cfam_GSD_1.01755,774,338 - 56,001,496 (-)NCBI
Spag17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,287,645 - 11,496,064 (+)NCBI
SpeTri2.0NW_0049366273,002,893 - 3,201,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14102,596,465 - 102,826,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,361,404 - 112,451,393 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12015,545,340 - 15,780,126 (+)NCBI
ChlSab1.1 Ensembl2015,579,532 - 15,767,354 (+)Ensembl
Vero_WHO_p1.0NW_02366603818,210,829 - 18,453,389 (+)NCBI
Spag17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477213,626,247 - 13,836,442 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005389065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013516488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001234871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01033468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01033474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDK01356416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000009301   ⟹   ENSCLAP00000009172
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543521,078,646 - 21,282,043 (-)Ensembl
RefSeq Acc Id: XM_005389065   ⟹   XP_005389122
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516482   ⟹   XP_013371936
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516483   ⟹   XP_013371937
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,067,187 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516484   ⟹   XP_013371938
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516485   ⟹   XP_013371939
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516486   ⟹   XP_013371940
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516488   ⟹   XP_013371942
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,217,970 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001234871
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543521,063,005 - 21,281,997 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005389122   ⟸   XM_005389065
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013371940   ⟸   XM_013516486
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013371938   ⟸   XM_013516484
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371939   ⟸   XM_013516485
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371936   ⟸   XM_013516482
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013371942   ⟸   XM_013516488
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013371937   ⟸   XM_013516483
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000009172   ⟸   ENSCLAT00000009301


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006388 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009172 ENTREZGENE
Ensembl Transcript ENSCLAT00000009301 ENTREZGENE
NCBI Gene Spag17 ENTREZGENE