Rp1l1 (RP1 like 1) - Rat Genome Database

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Gene: Rp1l1 (RP1 like 1) Chinchilla lanigera
Analyze
Symbol: Rp1l1
Name: RP1 like 1
RGD ID: 8968354
Description: INVOLVED IN photoreceptor cell development (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); photoreceptor connecting cilium (ortholog); photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinitis pigmentosa 1 like 1; retinitis pigmentosa 1-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540352,180,612 - 52,200,569 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rp1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540352,180,612 - 52,200,569 (-)NCBIChiLan1.0ChiLan1.0
RP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38810,606,349 - 10,655,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl810,606,349 - 10,712,187 (-)EnsemblGRCh38hg38GRCh38
GRCh37810,463,859 - 10,512,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,501,269 - 10,550,027 (-)NCBINCBI36Build 36hg18NCBI36
Build 34810,501,270 - 10,550,027NCBI
Celera89,591,303 - 9,640,515 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef89,394,231 - 9,443,153 (-)NCBIHuRef
CHM1_1810,529,596 - 10,578,235 (-)NCBICHM1_1
T2T-CHM13v2.089,083,816 - 9,132,787 (+)NCBIT2T-CHM13v2.0
Rp1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,229,880 - 64,270,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,229,955 - 64,272,474 (+)EnsemblGRCm39 Ensembl
GRCm381463,992,431 - 64,033,506 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,992,506 - 64,035,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,611,268 - 64,652,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,946,541 - 62,987,953 (+)NCBIMGSCv36mm8
Celera1461,769,430 - 61,810,604 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.34NCBI
Rp1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81542,435,803 - 42,447,165 (+)NCBIGRCr8
mRatBN7.21538,259,907 - 38,271,269 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,259,928 - 38,270,316 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01547,344,380 - 47,384,461 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,373,120 - 47,383,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,117,811 - 51,143,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1537,912,769 - 37,952,844 (+)NCBICelera
Cytogenetic Map15p12NCBI
RP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,058,051 - 27,078,116 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,090,439 - 3,110,497 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v088,586,410 - 8,605,275 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,317,102 - 27,332,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,325,658 - 27,330,556 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,977,022 - 27,991,705 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02527,474,859 - 27,489,549 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12527,429,640 - 27,444,331 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02527,323,498 - 27,338,179 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02527,477,657 - 27,492,342 (+)NCBIUU_Cfam_GSD_1.0
Rp1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049436,021,659 - 6,058,745 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366752,527,406 - 2,564,464 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11413,790,287 - 13,841,230 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,156,836 - 15,192,516 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,479,768 - 8,499,497 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605233,925,836 - 33,944,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rp1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475824,480,805 - 24,516,524 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005373909   ⟹   XP_005373966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540352,180,612 - 52,200,569 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373966 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005373966   ⟸   XM_005373909
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Rp1l1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-12-20 Rp1l1  RP1 like 1    retinitis pigmentosa 1 like 1  Symbol and/or name change 5135510 APPROVED
2016-10-18 Rp1l1  retinitis pigmentosa 1 like 1    retinitis pigmentosa 1-like 1  Symbol and/or name change 5135510 APPROVED