Gli2 (GLI family zinc finger 2) - Rat Genome Database

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Gene: Gli2 (GLI family zinc finger 2) Chinchilla lanigera
Analyze
Symbol: Gli2
Name: GLI family zinc finger 2
RGD ID: 9046786
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anatomical structure development (ortholog); anatomical structure formation involved in morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Animal Disease Models (ortholog); Anorectal Malformations (ortholog); FOUND IN axoneme (ortholog); ciliary tip (ortholog); cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: zinc finger protein GLI2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,892,869 - 9,118,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,892,917 - 9,124,672 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure development  (ISO)
anatomical structure formation involved in morphogenesis  (ISO)
anterior/posterior pattern specification  (ISO)
axon guidance  (ISO)
branching morphogenesis of an epithelial tube  (ISO)
cell differentiation  (ISO)
cellular response to organic cyclic compound  (ISO)
cellular response to virus  (ISO)
cerebellar cortex morphogenesis  (ISO)
chondrocyte differentiation  (ISO)
cochlea morphogenesis  (ISO)
developmental growth  (ISO)
dorsal/ventral neural tube patterning  (ISO)
dorsal/ventral pattern formation  (ISO)
embryonic digestive tract development  (ISO)
embryonic digit morphogenesis  (ISO)
epidermal cell differentiation  (ISO)
floor plate formation  (ISO)
hair follicle morphogenesis  (ISO)
head development  (ISO)
heart development  (ISO)
hindbrain development  (ISO)
hindgut morphogenesis  (ISO)
in utero embryonic development  (ISO)
kidney development  (ISO)
lung development  (ISO)
mammary gland development  (ISO)
mammary gland duct morphogenesis  (ISO)
morphogenesis of an epithelium  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of chondrocyte differentiation  (ISO)
negative regulation of smoothened signaling pathway  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neural tube development  (ISO)
neuron development  (ISO)
notochord regression  (ISO)
odontogenesis of dentin-containing tooth  (ISO)
osteoblast development  (ISO)
osteoblast differentiation  (ISO)
pattern specification process  (ISO)
pituitary gland development  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of DNA replication  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
positive regulation of transcription, DNA-templated  (ISO)
prostate gland development  (ISO)
prostatic bud formation  (ISO)
proximal/distal pattern formation  (ISO)
regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  (ISO)
response to mechanical stimulus  (ISO)
skeletal system development  (ISO)
smoothened signaling pathway  (ISO)
smoothened signaling pathway involved in dorsal/ventral neural tube patterning  (ISO)
smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation  (ISO)
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification  (ISO)
smoothened signaling pathway involved in ventral spinal cord interneuron specification  (ISO)
spinal cord dorsal/ventral patterning  (ISO)
spinal cord motor neuron differentiation  (ISO)
spinal cord ventral commissure morphogenesis  (ISO)
tube development  (ISO)
ventral midline development  (ISO)
ventral spinal cord development  (ISO)

Cellular Component
axoneme  (ISO)
ciliary tip  (ISO)
cilium  (ISO)
cytoplasm  (ISO)
membrane  (ISO)
motile cilium  (ISO)
nuclear speck  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Gli2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,892,869 - 9,118,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,892,917 - 9,124,672 (-)NCBIChiLan1.0ChiLan1.0
GLI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2120,735,623 - 120,992,653 (+)EnsemblGRCh38hg38GRCh38
GRCh382120,735,868 - 120,992,653 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372121,493,444 - 121,750,229 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,266,327 - 121,466,321 (+)NCBINCBI36hg18NCBI36
Celera2114,879,848 - 115,075,199 (+)NCBI
Cytogenetic Map2q14.2NCBI
HuRef2113,876,969 - 114,072,693 (+)NCBIHuRef
CHM1_12121,559,011 - 121,754,271 (+)NCBICHM1_1
Gli2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,761,791 - 118,987,578 (-)NCBIGRCm39mm39
GRCm39 Ensembl1118,761,862 - 118,981,349 (-)Ensembl
GRCm381118,834,061 - 119,054,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,834,132 - 119,053,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,730,638 - 120,950,196 (-)NCBIGRCm37mm9NCBIm37
MGSCv361120,661,607 - 120,881,165 (-)NCBImm8
Celera1121,494,112 - 121,713,823 (-)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.17NCBI
Gli2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21329,946,809 - 30,163,901 (-)NCBI
Rnor_6.0 Ensembl1334,829,139 - 35,048,444 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01334,829,021 - 35,049,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01339,955,094 - 40,170,750 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,551,089 - 31,607,264 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11331,555,563 - 31,574,381 (-)NCBI
Celera1329,844,054 - 29,900,050 (-)NCBICelera
Cytogenetic Map13q11NCBI
GLI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B121,242,932 - 121,499,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,303,831 - 121,497,442 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B7,665,403 - 7,922,840 (+)NCBIMhudiblu_PPA_v0panPan3
GLI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11929,128,401 - 29,383,324 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1929,130,227 - 29,383,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1929,385,203 - 29,640,495 (-)NCBI
ROS_Cfam_1.01930,500,404 - 30,754,986 (-)NCBI
UMICH_Zoey_3.11929,191,227 - 29,444,875 (-)NCBI
UNSW_CanFamBas_1.01929,361,839 - 29,547,733 (-)NCBI
UU_Cfam_GSD_1.01930,542,746 - 30,798,466 (-)NCBI
Gli2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530391,769,648 - 92,002,404 (+)NCBI
SpeTri2.0NW_00493646949,616,552 - 49,788,760 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,313,817 - 30,579,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,312,528 - 30,580,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,267,097 - 35,303,278 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLI2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,302,890 - 9,561,287 (-)NCBI
ChlSab1.1 Ensembl109,304,645 - 9,369,115 (-)Ensembl
Gli2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473224,159,407 - 24,381,495 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005572   ⟹   ENSCLAP00000005472
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,892,869 - 9,118,499 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005573   ⟹   ENSCLAP00000005473
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554598,894,711 - 8,947,074 (-)Ensembl
RefSeq Acc Id: XM_013521092   ⟹   XP_013376546
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554598,892,917 - 9,124,672 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376546 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013376546   ⟸   XM_013521092
- Sequence:
RefSeq Acc Id: ENSCLAP00000005473   ⟸   ENSCLAT00000005573
RefSeq Acc Id: ENSCLAP00000005472   ⟸   ENSCLAT00000005572


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003886 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005472 ENTREZGENE
Ensembl Transcript ENSCLAT00000005572 ENTREZGENE
NCBI Gene Gli2 ENTREZGENE