Cimip2a (ciliary microtubule inner protein 2A)

Gene: Cimip2a (ciliary microtubule inner protein 2A) Chinchilla lanigera

Analyze

Symbol:

Cimip2a

Name:

ciliary microtubule inner protein 2A (Ensembl:family with sequence similarity 166 member A)

RGD ID:

9038990

Description:

ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); ciliary basal body (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam166a; family with sequence similarity 166 member A; family with sequence similarity 166, member A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	5,235,629 - 5,245,859 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	5,239,239 - 5,245,859 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adams-Oliver Syndrome 5 (ISO)

autosomal dominant intellectual developmental disorder 8 (ISO)

developmental and epileptic encephalopathy 14 (ISO)

epilepsy (ISO)

genetic disease (ISO)

Joubert syndrome 1 (ISO)

Kleefstra syndrome 1 (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

axonemal A tubule inner sheath (ISO)

ciliary basal body (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Cimip2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	5,235,629 - 5,245,859 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	5,239,239 - 5,245,859 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIMIP2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	137,243,599 - 137,255,122 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	137,243,584 - 137,247,770 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	140,138,051 - 140,142,203 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	139,257,858 - 139,262,043 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	110,653,622 - 110,657,807 (-)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	109,597,350 - 109,601,535 (-)	NCBI		HuRef
CHM1_1	9	140,286,771 - 140,290,956 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	149,481,268 - 149,488,986 (-)	NCBI		T2T-CHM13v2.0

Cimip2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	25,104,382 - 25,112,293 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	25,108,757 - 25,112,292 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	25,214,699 - 25,222,281 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	25,218,745 - 25,222,280 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	25,074,265 - 25,077,801 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	25,040,754 - 25,044,287 (+)	NCBI		MGSCv36	mm8
Celera	2	24,946,528 - 24,950,064 (+)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	17.08	NCBI

Cimip2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,429,413 - 28,437,210 (+)	NCBI		GRCr8
mRatBN7.2	3	8,030,548 - 8,038,370 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,033,246 - 8,037,961 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,135,941 - 11,142,644 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	19,722,170 - 19,728,873 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	17,912,013 - 17,918,716 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,434,348 - 2,441,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,438,089 - 2,441,706 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,415,630 - 2,422,989 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,380,458 - 3,387,167 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	2,857,966 - 2,864,675 (+)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

CIMIP2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,144,770 - 2,156,033 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,150,770 - 2,158,366 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	108,303,199 - 108,310,953 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	137,271,636 - 137,279,327 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	137,271,636 - 137,275,827 (-)	Ensembl	panpan1.1		panPan2

CIMIP2A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	48,426,916 - 48,432,245 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	48,428,759 - 48,432,243 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	47,613,246 - 47,618,568 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,288,078 - 49,293,403 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	49,289,915 - 49,293,401 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	48,064,484 - 48,069,808 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,363,319 - 48,368,636 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	48,410,243 - 48,415,781 (+)	NCBI		UU_Cfam_GSD_1.0

Cimip2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	202,625,734 - 202,632,308 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936669	744,398 - 749,212 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936669	746,530 - 749,225 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIMIP2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	1	314,129,812 - 314,135,488 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIMIP2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	940,991 - 945,768 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	941,485 - 945,650 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666058	4,360,071 - 4,365,468 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimip2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	711,349 - 715,024 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	710,923 - 715,126 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005408608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01066963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01066964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01308056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009573 ⟹ ENSCLAP00000009444

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955513	5,235,629 - 5,245,859 (-)	Ensembl

RefSeq Acc Id:

XM_005408608 ⟹ XP_005408665

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955513	5,239,239 - 5,245,859 (-)	NCBI

Sequence:

show sequence

GGAAGGAGCACTGTCCAGCTCCACAGGAACTCCCCCAGCCTGCCTGGGAAGAGCCAGAGCCAGA
ATTTGAACAGTGCCAGATCCAGGGAATAAGATGGGTGAGGACATGCTACCTGCTCTTGTGAGCT
GCCTTTTCACTGGAGGGCGCTCAGCAGCTCAGACACTGTGAAGACACACAGGAAAGAGCACCTC
CAGAACTGCTTCAGAAAGTGGGAGAAGGGGCCCAGCCTTCGAGGGCAGTCTGAGGCACAATGAC
AGCTACTCCAAAACACTCGCTCTTCACGCCAGAACCTCACTATATCCCTGGCTATGCTGGCTTC
TACCCGCAGCTGCGATACCAGGTGGGGAACACCTATGGGCGCACCACAGCACAGCTGCTCACAG
ATCCCAGCGTGCAGAAGAGCCCCTGCTCTGTGCTGTCGCCCATGACCAAGCCCAAGTTCATCGA
GGACTTCAGCAAGTCCAAGCCCCCGTGGGTTCCCTGCCGGGACCTGGCTGAGCCACACATCCCC
CACTACACTGGTCTGAAGCCCTACAGGAACTTCGAGATCCTGGGCAAGCTGCCACCACAGGTGG
ACAACCAGGAGCCACCAGGAGCAGAGAACATGCCCAGACAGGTTGCGGTGCCAGCTGGCTTCAT
GCCCTATCCCCCCTACCCACCATGCCCCCCGGGCAGAAAGGGGGACTCCATCGACATGGGACAC
CCGGGCCTGCGACTGGCATATGGGGAAGAGGCCTGGAAGACTGCCCACCCTGCCCATGGGACTC
CAGGGCAGCACCAGCTGTACCACTGCAGGAGGGACGAGTACCCTCCCCCACCCCTCCAGCTGGA
GACACTGGACGTAGACAGGTTCCAGCGGCTGCCCCAACTGGACCACCCCAATCTAATCCAAAGA
AAAGCCATTTCAGGTTACGCTGGCTTCATCCCCCGCTTCACCTGGGTGATGGGGACGAATTACC
GTGACGGAGTCACACAGGCTATGGAGGAGTTTGACAAGAACCAGTTCCAGTCCAGAAACCCTGT
CTGTCCGCTGGGGCAGCGGCTGCCCAGGACATACTGGCCCCACAGCACCATCTACAGAAGCCAG
GGCCTGATCCCCTTCTACATGGGCTTCATCCCCTCCATGCAAGACAACTACGCAATGACGTTTG
GCAACAGCACTCGCAAAGCCTATCAGAAGGAACTGGAGAGGCGAAACCACGCACTATGAAATGC
TTTAATGGTGTGTGTGTGCAGGATGCGATGTCAAGACAGAGACAGCGTGCACAGTTAGACAGGG
TTATCAGCGGGCTGTGGGTGAATAAAGAGTTCACACTGCTTCCACACTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005408665	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009444
	ENSCLAP00000009444.1

RefSeq Acc Id:

XP_005408665 ⟸ XM_005408608

- UniProtKB:

A0A8C2YMG3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTATPKHSLFTPEPHYIPGYAGFYPQLRYQVGNTYGRTTAQLLTDPSVQKSPCSVLSPMTKPKF
IEDFSKSKPPWVPCRDLAEPHIPHYTGLKPYRNFEILGKLPPQVDNQEPPGAENMPRQVAVPAG
FMPYPPYPPCPPGRKGDSIDMGHPGLRLAYGEEAWKTAHPAHGTPGQHQLYHCRRDEYPPPPLQ
LETLDVDRFQRLPQLDHPNLIQRKAISGYAGFIPRFTWVMGTNYRDGVTQAMEEFDKNQFQSRN
PVCPLGQRLPRTYWPHSTIYRSQGLIPFYMGFIPSMQDNYAMTFGNSTRKAYQKELERRNHAL

hide sequence

RefSeq Acc Id:

ENSCLAP00000009444 ⟸ ENSCLAT00000009573

Protein Domains

Ciliary microtubule inner protein 2A-C-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006552	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009573	ENTREZGENE
	ENSCLAT00000009573.1	UniProtKB/TrEMBL
InterPro	FAM166/UPF0605	UniProtKB/TrEMBL
NCBI Gene	Fam166a	ENTREZGENE
PANTHER	PROTEIN FAM166A	UniProtKB/TrEMBL
	PROTEIN FAM166A	UniProtKB/TrEMBL
Pfam	DUF2475	UniProtKB/TrEMBL
UniProt	A0A8C2YMG3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-02	Cimip2a	ciliary microtubule inner protein 2A	Fam166a	family with sequence similarity 166 member A	Symbol and/or name change	5135510	APPROVED
2016-08-16	Fam166a	family with sequence similarity 166 member A		family with sequence similarity 166, member A	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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