Rsph9 (radial spoke head component 9) - Rat Genome Database

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Gene: Rsph9 (radial spoke head component 9) Chinchilla lanigera
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Symbol: Rsph9
Name: radial spoke head component 9
RGD ID: 8817383
Description: INVOLVED IN axonemal central apparatus assembly (ortholog); axoneme assembly (ortholog); cilium movement (ortholog); ASSOCIATED WITH primary ciliary dyskinesia (ortholog); primary ciliary dyskinesia 12 (ortholog); FOUND IN 9+2 motile cilium (ortholog); axoneme (ortholog); motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: radial spoke head 9 homolog; radial spoke head 9 homolog (Chlamydomonas); radial spoke head protein 9 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Rsph9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBIChiLan1.0ChiLan1.0
RSPH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl643,645,036 - 43,672,600 (+)EnsemblGRCh38hg38GRCh38
GRCh38643,645,030 - 43,672,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37643,612,773 - 43,640,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,720,788 - 43,746,722 (+)NCBINCBI36hg18NCBI36
Build 34643,720,787 - 43,746,722NCBI
Celera645,164,388 - 45,190,375 (+)NCBI
Cytogenetic Map6p21.1NCBI
HuRef643,331,943 - 43,357,789 (+)NCBIHuRef
CHM1_1643,615,830 - 43,641,745 (+)NCBICHM1_1
Rsph9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,432,964 - 46,455,171 (-)NCBIGRCm39mm39
GRCm39 Ensembl1746,432,961 - 46,455,142 (-)Ensembl
GRCm381746,122,038 - 46,144,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,122,035 - 46,144,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,266,226 - 46,281,147 (-)NCBIGRCm37mm9NCBIm37
MGSCv361745,592,858 - 45,607,779 (-)NCBImm8
Celera1749,560,383 - 49,575,628 (-)NCBICelera
Cytogenetic Map17CNCBI
Rsph9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2914,839,565 - 14,860,062 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl914,840,115 - 14,860,062 (+)Ensembl
Rnor_6.0917,224,589 - 17,245,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,225,122 - 17,245,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,120,436 - 16,140,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,405,162 - 10,425,818 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1910,402,513 - 10,416,012 (+)NCBI
Celera912,587,282 - 12,607,082 (+)NCBICelera
Cytogenetic Map9q12NCBI
RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1644,524,405 - 44,550,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBIMhudiblu_PPA_v0panPan3
RSPH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,093,016 - 12,105,721 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,096,568 - 12,105,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,119,216 - 12,131,955 (+)NCBI
ROS_Cfam_1.01212,576,751 - 12,589,489 (+)NCBI
UMICH_Zoey_3.11212,101,802 - 12,114,539 (+)NCBI
UNSW_CanFamBas_1.01212,188,811 - 12,201,535 (+)NCBI
UU_Cfam_GSD_1.01212,282,317 - 12,295,061 (+)NCBI
Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,591,103 - 47,696,663 (+)NCBI
SpeTri2.0NW_00493647616,351,794 - 16,369,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,625,787 - 38,641,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,624,942 - 38,641,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,208,277 - 44,223,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,497,793 - 28,520,678 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,495,424 - 28,520,518 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604443,697,177 - 43,720,335 (+)NCBIVero_WHO_p1.0
Rsph9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475416,020,566 - 16,042,088 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018703   ⟹   ENSCLAP00000018521
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)Ensembl
RefSeq Acc Id: XM_005389787   ⟹   XP_005389844
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516944   ⟹   XP_013372398
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554379,437,281 - 9,444,759 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389844 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372398 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005389844   ⟸   XM_005389787
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013372398   ⟸   XM_013516944
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000018521   ⟸   ENSCLAT00000018703


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012706 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018521 ENTREZGENE
Ensembl Transcript ENSCLAT00000018703 ENTREZGENE
NCBI Gene Rsph9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Rsph9  radial spoke head component 9  Rsph9  radial spoke head 9 homolog  Symbol and/or name change 5135510 APPROVED
2016-08-03 Rsph9  radial spoke head 9 homolog    radial spoke head 9 homolog (Chlamydomonas)  Symbol and/or name change 5135510 APPROVED