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ONTOLOGY REPORT - ANNOTATIONS

Term:postsynaptic specialization assembly
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Accession:GO:0098698 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane.


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postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crk v-crk avian sarcoma virus CT10 oncogene homolog involved_in IDA
IMP		 (PMID:21041412) SynGO PMID:21041412 NCBI chr11:75,570,020...75,599,254
Ensembl chr11:75,570,085...75,597,734 		JBrowse link
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like involved_in IMP
IDA		 (PMID:21041412) SynGO PMID:21041412 NCBI chr16:17,269,849...17,305,304
Ensembl chr16:17,269,851...17,305,298 		JBrowse link
G Dock7 dedicator of cytokinesis 7 involved_in IDA
IMP		 (PMID:21041412) SynGO PMID:21041412 NCBI chr 4:98,824,669...99,019,190
Ensembl chr 4:98,824,908...99,009,152 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
IDA		 (PMID:15620359) SynGO PMID:15620359 NCBI chr 3:25,475,972...26,387,504
Ensembl chr 3:25,480,379...26,386,609 		JBrowse link
G Nlgn2 neuroligin 2 involved_in IDA
IMP		 (PMID:15620359), (PMID:19755106) SynGO PMID:15620359 PMID:19755106 NCBI chr11:69,713,949...69,728,610
Ensembl chr11:69,713,948...69,728,610 		JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr  X:100,342,785...100,364,956
Ensembl chr  X:100,342,774...100,369,569 		JBrowse link
G Ntng2 netrin G2 involved_in IDA
IMP		 (PMID:16980967) SynGO PMID:16980967 NCBI chr 2:29,084,738...29,138,111
Ensembl chr 2:29,084,553...29,143,017 		JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within		 IDA
IMP
IGI		 (MGI:5284797|PMID:15620359)
(PMID:29107521)		 BHF-UCL
MGI		 PMID:15620359 PMID:29107521 MGI:5284797 NCBI chr11:69,713,949...69,728,610
Ensembl chr11:69,713,948...69,728,610 		JBrowse link
G Nrxn1 neurexin I involved_in IDA (MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692) BHF-UCL PMID:15620359 PMID:21424692 MGI:5284797 MGI:5285129 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Nrxn2 neurexin II involved_in IDA (MGI:5285129|PMID:21424692) BHF-UCL PMID:21424692 MGI:5285129 NCBI chr19:6,468,786...6,583,247
Ensembl chr19:6,468,761...6,594,199 		JBrowse link
G Slitrk3 SLIT and NTRK-like family, member 3 acts_upstream_of_or_within IGI
IMP		 (PMID:29107521) MGI PMID:29107521 NCBI chr 3:72,954,399...72,965,298
Ensembl chr 3:72,954,598...72,965,136 		JBrowse link
G Zdhhc12 zinc finger, DHHC domain containing 12 involved_in IMP (MGI:5586946|PMID:25025157) UniProt PMID:25025157 MGI:5586946 NCBI chr 2:29,980,956...29,983,647
Ensembl chr 2:29,980,956...29,983,660 		JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1ql2 complement component 1, q subcomponent-like 2 involved_in IDA
IMP		 (PMID:27133466) SynGO PMID:27133466 NCBI chr 1:120,268,312...120,270,903
Ensembl chr 1:120,268,312...120,270,903 		JBrowse link
G C1ql3 C1q-like 3 involved_in IDA
IMP		 (PMID:27133466) SynGO PMID:27133466 NCBI chr 2:13,006,591...13,016,491
Ensembl chr 2:13,008,268...13,016,617 		JBrowse link
G Csmd2 CUB and Sushi multiple domains 2 involved_in IDA
IMP		 (PMID:31068362) SynGO PMID:31068362 NCBI chr 4:127,880,310...128,461,459
Ensembl chr 4:127,881,650...128,461,449 		JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:119,429,545...119,438,646
Ensembl chr11:119,429,545...119,438,579 		JBrowse link
G Nrxn3 neurexin III involved_in IDA
IMP		 (PMID:27133466) SynGO PMID:27133466 NCBI chr12:88,689,454...90,301,709
Ensembl chr12:88,689,646...90,301,709 		JBrowse link
G Ntrk3 neurotrophic tyrosine kinase, receptor, type 3 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 7:77,825,711...78,228,865
Ensembl chr 7:77,825,707...78,387,760 		JBrowse link
G Pten phosphatase and tensin homolog involved_in IMP (MGI:3772418|PMID:18082964) CACAO PMID:18082964 MGI:3772418 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Reln reelin involved_in IC (MGI:5286805|PMID:21664258) BHF-UCL PMID:21664258 MGI:5286805 NCBI chr 5:22,089,452...22,549,703
Ensembl chr 5:22,089,452...22,549,700 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IMP (MGI:4948759|PMID:21423165) BHF-UCL PMID:21423165 MGI:4948759 NCBI chr15:89,376,929...89,444,464
Ensembl chr15:89,383,826...89,444,464 		JBrowse link
G Slitrk3 SLIT and NTRK-like family, member 3 acts_upstream_of_or_within IMP (PMID:29107521) MGI PMID:29107521 NCBI chr 3:72,954,399...72,965,298
Ensembl chr 3:72,954,598...72,965,136 		JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr16:56,298,179...56,510,498
Ensembl chr16:56,298,241...56,510,498 		JBrowse link
G Caskin1 CASK interacting protein 1 involved_in IDA
IMP		 (PMID:31727973) SynGO PMID:31727973 NCBI chr17:24,706,871...24,727,883
Ensembl chr17:24,707,575...24,727,645 		JBrowse link
G Cbln1 cerebellin 1 precursor protein involved_in IDA
IMP		 (PMID:20395510) SynGO PMID:20395510 NCBI chr 8:88,195,481...88,199,220
Ensembl chr 8:88,195,033...88,199,237 		JBrowse link
G Cript cysteine-rich PDZ-binding protein involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr17:87,332,989...87,343,236
Ensembl chr17:87,332,978...87,343,238 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in IMP
IDA		 (PMID:32324534) SynGO PMID:32324534 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Grid2 glutamate receptor, ionotropic, delta 2 involved_in IDA
IMP		 (PMID:20395510) SynGO PMID:20395510 NCBI chr 6:63,230,118...64,681,305
Ensembl chr 6:63,232,860...64,681,307 		JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IMP
IDA		 (PMID:22357843) SynGO PMID:22357843 NCBI chr16:26,400,259...26,548,878
Ensembl chr16:26,400,454...26,548,867 		JBrowse link
G Lats1 large tumor suppressor involved_in ISO PMID:29317530 SynGO PMID:29317530 RGD:405650325 NCBI chr10:7,556,964...7,592,225
Ensembl chr10:7,556,978...7,592,224 		JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 7:28,151,194...28,167,667
Ensembl chr 7:28,151,405...28,167,667 		JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IMP
IBA
IDA		 (PMID:20410109) SynGO
GO_Central		 PMID:20410109 GO_REF:0000033 NCBI chr19:4,661,817...4,665,720
Ensembl chr19:4,661,813...4,665,695 		JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr 7:44,091,911...44,112,775
Ensembl chr 7:44,078,442...44,112,775 		JBrowse link
G Lrrtm1 leucine rich repeat transmembrane neuronal 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:77,192,762...77,236,898
Ensembl chr 6:77,219,672...77,234,774 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr18:35,342,056...35,348,077
Ensembl chr18:35,342,056...35,348,077 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
IDA		 (PMID:32324534) SynGO PMID:32324534 NCBI chr 3:25,475,972...26,387,504
Ensembl chr 3:25,480,379...26,386,609 		JBrowse link
G Nrxn1 neurexin I involved_in IMP
IDA		 (PMID:21410790) SynGO PMID:21410790 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IDA
IMP		 (PMID:34613779) SynGO PMID:34613779 NCBI chr15:93,396,992...93,494,147
Ensembl chr15:93,396,995...93,493,772 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in IMP
IDA		 (PMID:23711981), (PMID:34613779) SynGO PMID:23711981 PMID:34613779 NCBI chr 6:92,347,876...92,683,233
Ensembl chr 6:92,347,889...92,683,136 		JBrowse link
G Ptk2b PTK2 protein tyrosine kinase 2 beta involved_in IMP
IDA		 (PMID:28555636) SynGO PMID:28555636 NCBI chr14:66,390,706...66,518,549
Ensembl chr14:66,390,706...66,518,501 		JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D involved_in ISO
IDA
IMP		 (PMID:22357843) MGI
SynGO		 PMID:22357843 GO_REF:0000096 MGI:4417868 NCBI chr 4:75,859,474...78,132,282
Ensembl chr 4:75,859,475...78,130,198 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S involved_in ISO
IDA
IMP		 (PMID:21262467) MGI
SynGO		 PMID:21262467 GO_REF:0000096 MGI:4417868 NCBI chr17:56,719,426...56,783,480
Ensembl chr17:56,719,426...56,783,483 		JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr12:82,216,138...82,498,560
Ensembl chr12:82,216,094...82,498,560 		JBrowse link
regulation of postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase involved_in ISO PMID:20220006 SynGO PMID:20220006 RGD:8693579 NCBI chr 2:31,578,256...31,697,105
Ensembl chr 2:31,578,388...31,694,239 		JBrowse link
G Arhgef9 CDC42 guanine nucleotide exchange factor 9 involved_in IDA
IMP
IBA		 (PMID:17690689) SynGO
GO_Central		 PMID:17690689 GO_REF:0000033 NCBI chr  X:94,092,536...94,240,801
Ensembl chr  X:94,092,541...94,240,462 		JBrowse link
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 involved_in ISO PMID:23839781 SynGO PMID:23839781 RGD:405650375 NCBI chr 9:78,385,735...78,389,006
Ensembl chr 9:78,385,731...78,396,433 		JBrowse link
G Eef1a2 eukaryotic translation elongation factor 1 alpha 2 involved_in ISO PMID:23839781 SynGO PMID:23839781 RGD:405650375 NCBI chr 2:180,783,551...180,798,808
Ensembl chr 2:180,789,446...180,798,807 		JBrowse link
G Gap43 growth associated protein 43 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr16:42,068,915...42,161,014
Ensembl chr16:42,068,805...42,161,014 		JBrowse link
G Nptxr neuronal pentraxin receptor involved_in IDA
IMP		 (PMID:27986928) SynGO PMID:27986928 NCBI chr15:79,670,552...79,688,910
Ensembl chr15:79,670,552...79,688,967 		JBrowse link
G Nrxn1 neurexin I involved_in IDA
IMP		 (PMID:15620359) SynGO PMID:15620359 NCBI chr17:90,341,072...91,400,587
Ensembl chr17:90,341,059...91,400,499 		JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 involved_in IMP
IDA		 (PMID:28576936) SynGO PMID:28576936 NCBI chr19:4,761,236...4,804,006
Ensembl chr19:4,761,195...4,802,388 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28576
    cellular process 17548
      cellular component organization or biogenesis 6978
        cellular component organization 6765
          organelle organization 3726
            organelle assembly 1077
              postsynaptic specialization assembly 47
                postsynaptic density assembly + 34
                regulation of postsynaptic specialization assembly + 29
Path 2
Term Annotations click to browse term
  biological_process 28576
    cellular process 17548
      cellular component organization or biogenesis 6978
        cellular component biogenesis 3451
          cellular component assembly 3171
            cell junction assembly 567
              synapse assembly 305
                postsynapse assembly 112
                  postsynaptic specialization assembly 47
                    postsynaptic density assembly + 34
                    regulation of postsynaptic specialization assembly + 29
paths to the root