Cbln1 (cerebellin 1 precursor protein)

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Gene: Cbln1 (cerebellin 1 precursor protein) Mus musculus

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Symbol:

Cbln1

Name:

cerebellin 1 precursor protein

RGD ID:

1557010

MGI Page

MGI

Description:

Enables identical protein binding activity. Involved in several processes, including cerebellar granule cell differentiation; heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; and regulation of synapse assembly. Acts upstream of or within establishment of localization in cell; positive regulation of synapse assembly; and protein secretion. Located in extracellular region and postsynaptic membrane. Is active in glutamatergic synapse; parallel fiber to Purkinje cell synapse; and synaptic cleft. Is expressed in several structures, including central nervous system; limb; oral region epithelium; reproductive system; and sensory organ. Orthologous to human CBLN1 (cerebellin 1 precursor).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AI323299; brain protein D3; cerebellin-1; precerebellin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CBLN1 (cerebellin 1 precursor)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cbln1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cbln1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CBLN1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CBLN1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cbln1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CBLN1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CBLN1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cbln1 (cerebellin 1 precursor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CBLN2 (cerebellin 2 precursor)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CBLN1 (cerebellin 1 precursor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Cbln1 (cerebellin 1 precursor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cbln1 (cerebellin 1 precursor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cbln1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,195,481 - 88,199,220 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	88,195,033 - 88,199,237 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	87,468,853 - 87,472,592 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	87,468,405 - 87,472,609 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	89,992,752 - 89,996,491 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	90,358,972 - 90,362,401 (-)	NCBI		MGSCv36	mm8
Celera	8	91,733,788 - 91,737,188 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI
cM Map	8	42.16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 16q12 Duplication Syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-Zearalanol (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (ISO)

DDT (ISO)

decabromodiphenyl ether (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (EXP)

fenvalerate (ISO)

flusilazole (ISO)

folic acid (EXP)

fulvestrant (ISO)

leflunomide (EXP)

mono(2-ethylhexyl) phthalate (EXP)

morphine (EXP)

nicotine (EXP)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Soman (ISO)

sunitinib (ISO)

Tetrachlorobisphenol A (ISO)

titanium dioxide (EXP)

tributylstannane (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (EXP,ISO)

vinclozolin (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cerebellar granule cell differentiation (IGI)

establishment of localization in cell (IMP)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (IGI)

maintenance of synapse structure (IBA,IMP)

negative regulation of excitatory postsynaptic potential (IEA,ISO)

negative regulation of inhibitory synapse assembly (IMP)

positive regulation of long-term synaptic depression (IEA,ISO)

positive regulation of synapse assembly (IDA,IGI)

protein secretion (IMP)

regulation of postsynaptic density assembly (IDA,IMP)

regulation of presynapse assembly (IDA,IMP)

synapse assembly (IDA,IGI)

synapse organization (IMP)

trans-synaptic signaling, modulating synaptic transmission (IDA,IEP,IMP)

Cellular Component

extracellular region (IDA)

glutamatergic synapse (IBA,IDA,IEP,IMP)

parallel fiber to Purkinje cell synapse (IDA)

postsynaptic membrane (IDA)

synapse (IDA)

synaptic cleft (IBA,IDA)

Molecular Function

identical protein binding (IPI)

protein binding (IPI)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal cerebellar granule layer morphology (IAGP)

abnormal gait (IAGP)

abnormal long-term depression (IAGP)

abnormal motor capabilities/coordination/movement (IAGP)

abnormal nervous system morphology (IAGP)

abnormal Purkinje cell innervation (IAGP)

abnormal synapse morphology (IAGP)

ataxia (IAGP)

decreased excitatory postsynaptic current amplitude (IAGP)

impaired coordination (IAGP)

no abnormal phenotype detected (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis.	Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2.	Absence epilepsy in tottering mutant mice is associated with calcium channel defects.	Fletcher CF, etal., Cell 1996 Nov 15;87(4):607-17.
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	MGD IEA	MGD IEA
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:3199194	PMID:3420533	PMID:7877445	PMID:8889548	PMID:9838062	PMID:10349636	PMID:10922068	PMID:10964938	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11688560
PMID:12106288	PMID:12477932	PMID:12617826	PMID:14550793	PMID:14595844	PMID:15533830	PMID:15944188	PMID:16059910	PMID:16135095	PMID:16141072	PMID:16141073	PMID:16214126
PMID:16234806	PMID:16602821	PMID:16844427	PMID:16860307	PMID:16930405	PMID:17030622	PMID:17331201	PMID:18001291	PMID:18287559	PMID:18391535	PMID:18436715	PMID:18524896
PMID:19200061	PMID:19250438	PMID:19344768	PMID:19403810	PMID:19884258	PMID:20395510	PMID:20503425	PMID:20525073	PMID:20535596	PMID:20537373	PMID:20599760	PMID:20856818
PMID:21356198	PMID:21410790	PMID:21801425	PMID:21873635	PMID:22117778	PMID:22191730	PMID:22220752	PMID:22457515	PMID:22496664	PMID:22794259	PMID:23141067	PMID:23853053
PMID:24066094	PMID:24298240	PMID:24467251	PMID:24749662	PMID:25645944	PMID:27725662	PMID:27852787	PMID:28297715	PMID:28378742	PMID:28714144	PMID:29670152	PMID:29691328
PMID:29782851	PMID:30875130	PMID:31072786	PMID:31666685	PMID:32274496	PMID:32325033	PMID:32855309	PMID:33352118	PMID:33762741	PMID:34111112	PMID:34158618	PMID:34564702
PMID:34685624	PMID:34919427	PMID:35084365	PMID:36007521	PMID:36205393	PMID:36395107	PMID:36476860	PMID:36596814	PMID:36823038

Genomics

Comparative Map Data

Cbln1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	88,195,481 - 88,199,220 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	88,195,033 - 88,199,237 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	87,468,853 - 87,472,592 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	87,468,405 - 87,472,609 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	89,992,752 - 89,996,491 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	90,358,972 - 90,362,401 (-)	NCBI		MGSCv36	mm8
Celera	8	91,733,788 - 91,737,188 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI
cM Map	8	42.16	NCBI

CBLN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	49,277,917 - 49,281,838 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	49,277,917 - 49,281,838 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	49,311,828 - 49,315,749 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	47,870,196 - 47,873,193 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	47,870,201 - 47,873,184	NCBI
Celera	16	33,823,798 - 33,827,712 (-)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI
HuRef	16	35,201,971 - 35,205,448 (-)	NCBI		HuRef
CHM1_1	16	50,718,736 - 50,722,650 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	55,075,687 - 55,079,608 (-)	NCBI		T2T-CHM13v2.0

Cbln1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	35,782,151 - 35,785,960 (+)	NCBI		GRCr8
mRatBN7.2	19	19,608,763 - 19,612,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	19,608,716 - 19,612,572 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	21,288,213 - 21,292,022 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	26,482,719 - 26,486,528 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	29,446,719 - 29,450,528 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	20,607,507 - 20,611,316 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	20,607,507 - 20,611,316 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	31,617,915 - 31,621,724 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	20,941,254 - 20,945,063 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	19,489,280 - 19,493,089 (+)	NCBI		Celera
Cytogenetic Map	19	p11	NCBI

Cbln1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	7,516,487 - 7,519,929 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	7,516,487 - 7,519,929 (-)	NCBI	ChiLan1.0	ChiLan1.0

CBLN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	58,733,418 - 58,736,757 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	64,638,723 - 64,642,070 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	29,538,723 - 29,542,625 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	48,427,645 - 48,430,508 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	48,427,645 - 48,430,512 (-)	Ensembl	panpan1.1		panPan2

CBLN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	65,974,989 - 65,978,464 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	65,974,981 - 65,977,179 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	62,551,600 - 62,555,146 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	66,525,421 - 66,528,966 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	66,525,139 - 66,528,947 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	63,348,394 - 63,352,176 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	64,368,563 - 64,372,103 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	65,256,811 - 65,260,596 (+)	NCBI		UU_Cfam_GSD_1.0

Cbln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	57,092,332 - 57,095,795 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	2,494,156 - 2,496,743 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	2,493,280 - 2,496,738 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CBLN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	35,515,754 - 35,519,517 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	35,516,097 - 35,518,080 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CBLN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	35,068,087 - 35,075,215 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	35,071,051 - 35,075,159 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	41,428,097 - 41,431,375 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cbln1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624757	7,264,434 - 7,268,105 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624757	7,264,425 - 7,267,979 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cbln1
144 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	971
Count of miRNA genes:	340
Interacting mature miRNAs:	400
Transcripts:	ENSMUST00000034076, ENSMUST00000169693
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80793404	89740987	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse

Markers in Region

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,469,461 - 87,469,576	UniSTS	GRCm38
MGSCv37	8	89,993,360 - 89,993,475	UniSTS	GRCm37
Celera	8	91,734,396 - 91,734,511	UniSTS
Cytogenetic Map	8	C3	UniSTS
cM Map	8	40.0	UniSTS
cM Map	8	40.0	UniSTS

AI323299

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,469,028 - 87,469,175	UniSTS	GRCm38
MGSCv37	8	89,992,927 - 89,993,074	UniSTS	GRCm37
Celera	8	91,733,963 - 91,734,110	UniSTS
Cytogenetic Map	8	C3	UniSTS
cM Map	8	40.0	UniSTS
Whitehead/MRC_RH	8	1036.76	UniSTS

RH142530

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,470,927 - 87,471,085	UniSTS	GRCm38
MGSCv37	8	89,994,826 - 89,994,984	UniSTS	GRCm37
Celera	8	91,735,862 - 91,736,020	UniSTS
Cytogenetic Map	8	C3	UniSTS
cM Map	8	40.0	UniSTS

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,468,918 - 87,469,106	UniSTS	GRCm38
MGSCv37	8	89,992,817 - 89,993,005	UniSTS	GRCm37
Celera	8	91,733,853 - 91,734,041	UniSTS
Cytogenetic Map	8	C3	UniSTS
cM Map	8	40.0	UniSTS

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	C3	UniSTS

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,470,336 - 87,471,780	UniSTS	GRCm38
MGSCv37	8	89,994,235 - 89,995,679	UniSTS	GRCm37
Celera	8	91,735,271 - 91,736,715	UniSTS
Cytogenetic Map	8	C3	UniSTS

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	8	C3	UniSTS

Cbln1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	87,470,230 - 87,470,977	UniSTS	GRCm38
MGSCv37	8	89,994,129 - 89,994,876	UniSTS	GRCm37
Celera	8	91,735,165 - 91,735,912	UniSTS
Cytogenetic Map	8	C3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF164680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AI894057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK158818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK158885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC055730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC132120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC132122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X61448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000034076 ⟹ ENSMUSP00000034076

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	88,195,033 - 88,199,237 (-)	Ensembl
GRCm38.p6 Ensembl	8	87,468,405 - 87,472,609 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000169693 ⟹ ENSMUSP00000126575

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	88,195,866 - 88,199,014 (-)	Ensembl
GRCm38.p6 Ensembl	8	87,469,238 - 87,472,386 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000211279

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	88,195,495 - 88,197,696 (-)	Ensembl
GRCm38.p6 Ensembl	8	87,468,867 - 87,471,068 (-)	Ensembl

RefSeq Acc Id:

NM_019626 ⟹ NP_062600

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	88,195,481 - 88,199,220 (-)	NCBI
GRCm38	8	87,468,853 - 87,472,592 (-)	ENTREZGENE
MGSCv37	8	89,992,752 - 89,996,491 (-)	RGD
Celera	8	91,733,788 - 91,737,188 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

TCCGCCCGCTCCGGCTGCAGCGCCCGCTGCATCAATAATTCAGAGCGGCGGCGGCAGCAGCAGC
GGCGAGTGCGGACAGGAGGCGGCGGCAACAGCGGGGACCAGGCAGCAGAGGCTATGCATCCAAG
TGCGGCTGGGCGGCCGCGGCACCCCTGAGGCCCGGGCGGGGCTTCGGGCACACGGCACGCGGGG
ACATTTGTTCTGGAGTGCGAGGGAGAGGCGTAGTGGCCCGGGAGGCGTCGGCAGAGCTGCGCAC
AGAGCTGAGGAGGGGGCTTCGGAGCAGGGCTGGGGAGGGGGGCGGCTGGCGCTGGCAGCCCCCG
GGGTGGGGGGCGGGGTGGGCGCCGGAGGCGCGATGCTGGGCGTCGTGGAGCTGCTGCTGTTGGG
GACTGCGTGGCTGGCAGGCCCAGCCCGCGGGCAGAATGAGACAGAGCCCATCGTACTGGAGGGC
AAGTGCCTGGTGGTGTGTGACTCCAACCCCACGTCTGACCCTACGGGCACTGCTCTGGGCATCT
CTGTGCGCTCCGGCAGCGCCAAGGTGGCTTTCTCTGCCATCAGGAGCACCAACCATGAGCCGTC
CGAGATGAGTAATCGCACCATGATCATCTACTTCGACCAGGTACTAGTGAACATCGGGAACAAC
TTTGACTCAGAACGCAGCACTTTCATCGCCCCGCGCAAAGGCATCTACAGTTTTAACTTCCACG
TGGTGAAAGTCTACAACAGACAGACCATCCAGGTGAGCCTCATGTTGAACGGGTGGCCGGTGAT
TTCAGCCTTCGCCGGTGACCAAGACGTGACACGCGAGGCCGCCAGCAACGGCGTCCTCATCCAG
ATGGAGAAAGGCGACCGAGCATACCTCAAGCTGGAGCGGGGGAACTTGATGGGGGGCTGGAAGT
ACTCAACCTTCTCTGGATTCCTCGTGTTTCCCCTCTGACTGGCACGTATCGGGAATGGAGGCAG
GAGAGAGGCAGGAGGGGAGTGAGAAAGAGGCCGAAAATTACCAGGGCGAGGAAGCGGCGCCACC
GGAAACTTCCTACGTGTTCGTAGCTACACTGGGTACCAAGGTGCGCGCCGCCGGCGGTCCAACT
TCGTCCGCTCCCTTACTAAGAGAAGTAAATTTCGCTTAGCTCTGCACACTCCCGTTTCCAAAAT
TAATCTCGCCTTCCCCAAGCCAGTCGCAGTAATCGAGGAAGAGACTTGCCTTGTCATTATGGTT
CCTTACCCACGTCCATGTCCCTAACAATTAACGAAGTAATGTGAAATGTTTCTCCCGACCCGAC
CCCCCTCTGAACCCTGCCACTTACTGAAACTTAGTATGCCCCCCTGCCCCAGTTTGAAGAGGGG
GTCAGATTGTTTTTTTGTTTCTGTTTCCGAATGGGGCAGGTAGTTTTAATAACAGATTTTGCTC
TTCAAACACCGCGCCAGTTAAGCTGGAGAGAATTCGTCCCCGCTTGTTAGCGAAGGAAAGACTC
ACCTTCGTGGTGACTGGTTTGACTATACATAAATATGTATATGTATCATTTGTACACGAAGAAC
TCTTCCAGGTGGACGCTGGCTGTATTCCGTATTTCTGTCCTGTTCGGAGTGATCGTGAAATCTA
AGGCTGCTTGGTGTTTGTTCTCTGATGCTTGTCAATGCCCCGTGTTCTGTGGCTCCACCAACCG
CCAAGGAGGTTCTTCGGGACGCTTCTTCTTCCTCTGTAACATACGTGTGAATAGCCAAATTTTA
ATTTTGCTTTAATCCAATAAAGTCAAAGTGGGACTTTTATTTTTCTGAAACAGCTTTCTAAACT
TCGCCTTTTCCGGGTTGCGAGGTTGAGGCGGGCGGAGAAGCAAGAGACTTGGAAGCTGCAAGGA
GAGGCCAGGGCACAAGGCCTTCTTCGCAGAGCCATTTCTGCGCTGTCTCCCGCAGCAGGCTCCC
TTTGCCTTTCCTGTGTCCCCTGCTTTGGTGGAAAGTGAGATATAAGACCTAAATCCTGCTAGGC
GTGACCGAGGGCCTGGAAGCAGTTTCTTGCTCACCCTCAATTCCAAATGCATCAGGAATTATTC
CCAATCCTAGTACTCGAACCCGCCTGCCCCGCGTGACTGTCTTCACGCCTACTTTCCTTGGATG
TCTCCAGCTCTATCCGCTCCGCGGCGCCCGAAGCACCTGACACTTTGTACCAGCGCCTCTGAAC
CCGAGGTCCACCCGCCAAACAAACCCGGGCGGCCGGACTCGCGATTGCGCTCATTCGCAGGACT
TTCAAGGGGTTCGTCCAGAAGTTTTGATTGTACCGAAACATAATGTGCAAAGCAAAATTGAAAT
AAACGACTTCGTTTTAAGTCTGGAACGCTGAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_062600	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD47280	(Get FASTA)	NCBI Sequence Viewer
	AAH51956	(Get FASTA)	NCBI Sequence Viewer
	AAH55730	(Get FASTA)	NCBI Sequence Viewer
	AAI32121	(Get FASTA)	NCBI Sequence Viewer
	AAI32123	(Get FASTA)	NCBI Sequence Viewer
	BAE36602	(Get FASTA)	NCBI Sequence Viewer
	CAA43688	(Get FASTA)	NCBI Sequence Viewer
	EDL11037	(Get FASTA)	NCBI Sequence Viewer
	EDL11038	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000034076
	ENSMUSP00000034076.9
	ENSMUSP00000126575.2
GenBank Protein	Q9R171	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062600 ⟸ NM_019626
- Peptide Label:	precursor
- UniProtKB:	P28655 (UniProtKB/Swiss-Prot), Q9QVT5 (UniProtKB/Swiss-Prot), Q9R171 (UniProtKB/Swiss-Prot), Q7TNF5 (UniProtKB/TrEMBL), A2RSI1 (UniProtKB/TrEMBL), Q80W16 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLGVVELLLLGTAWLAGPARGQNETEPIVLEGKCLVVCDSNPTSDPTGTALGISVRSGSAKVAF SAIRSTNHEPSEMSNRTMIIYFDQVLVNIGNNFDSERSTFIAPRKGIYSFNFHVVKVYNRQTIQ VSLMLNGWPVISAFAGDQDVTREAASNGVLIQMEKGDRAYLKLERGNLMGGWKYSTFSGFLVFP L hide sequence

Ensembl Acc Id:

ENSMUSP00000034076 ⟸ ENSMUST00000034076

Ensembl Acc Id:

ENSMUSP00000126575 ⟸ ENSMUST00000169693

Protein Domains

C1q

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R171-F1-model_v2	AlphaFold	Q9R171	1-193	view protein structure

Promoters

RGD ID:

8667791

Promoter ID:

EPDNEW_M11927

Type:

initiation region

Name:

Cbln1_1

Description:

Mus musculus cerebellin 1 precursor protein , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	87,472,551 - 87,472,611	EPDNEW

RGD ID:

6842897

Promoter ID:

MM_KWN:55188

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain

Transcripts:

NM_019626, UC009MQQ.1, UC009MQS.1, XM_001474448_GM2694

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	89,996,611 - 89,997,262 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:88281	AgrOrtholog
Ensembl Genes	ENSMUSG00000031654	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000034076	ENTREZGENE
	ENSMUST00000034076.16	UniProtKB/Swiss-Prot
	ENSMUST00000169693.3	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C1q_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cerebellin_Synaptic_Org	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:12404	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:88281	ENTREZGENE
NCBI Gene	12404	ENTREZGENE
PANTHER	CEREBELLIN-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CEREBELLIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cbln1	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A2RSI1	ENTREZGENE
	CBLN1_MOUSE	UniProtKB/Swiss-Prot
	P28655	ENTREZGENE
	Q3TSS3_MOUSE	UniProtKB/TrEMBL
	Q7TNF5	ENTREZGENE, UniProtKB/TrEMBL
	Q80W16	ENTREZGENE, UniProtKB/TrEMBL
	Q9QVT5	ENTREZGENE
	Q9R171	ENTREZGENE
UniProt Secondary	A2RSI1	UniProtKB/TrEMBL
	P28655	UniProtKB/Swiss-Prot
	Q9QVT5	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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