CBLN1 (cerebellin 1 precursor) - Rat Genome Database

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Gene: CBLN1 (cerebellin 1 precursor) Chlorocebus sabaeus
Analyze
Symbol: CBLN1
Name: cerebellin 1 precursor
RGD ID: 18495061
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cerebellar granule cell differentiation (ortholog); establishment of localization in cell (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (ortholog); glutamatergic synapse (ortholog); parallel fiber to Purkinje cell synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cerebellin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,068,087 - 35,075,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl535,071,051 - 35,075,159 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604741,428,097 - 41,431,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CBLN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1535,068,087 - 35,075,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl535,071,051 - 35,075,159 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604741,428,097 - 41,431,375 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CBLN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381649,277,917 - 49,281,838 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1649,277,917 - 49,281,838 (-)EnsemblGRCh38hg38GRCh38
GRCh371649,311,828 - 49,315,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361647,870,196 - 47,873,193 (-)NCBINCBI36Build 36hg18NCBI36
Build 341647,870,201 - 47,873,184NCBI
Celera1633,823,798 - 33,827,712 (-)NCBICelera
Cytogenetic Map16q12.1NCBI
HuRef1635,201,971 - 35,205,448 (-)NCBIHuRef
CHM1_11650,718,736 - 50,722,650 (-)NCBICHM1_1
T2T-CHM13v2.01655,075,687 - 55,079,608 (-)NCBIT2T-CHM13v2.0
Cbln1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39888,195,481 - 88,199,220 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl888,195,033 - 88,199,237 (-)EnsemblGRCm39 Ensembl
GRCm38887,468,853 - 87,472,592 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl887,468,405 - 87,472,609 (-)EnsemblGRCm38mm10GRCm38
MGSCv37889,992,752 - 89,996,491 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36890,358,972 - 90,362,401 (-)NCBIMGSCv36mm8
Celera891,733,788 - 91,737,188 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map842.16NCBI
Cbln1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81935,782,151 - 35,785,960 (+)NCBIGRCr8
mRatBN7.21919,608,763 - 19,612,572 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1919,608,716 - 19,612,572 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1921,288,213 - 21,292,022 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01926,482,719 - 26,486,528 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01929,446,719 - 29,450,528 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01920,607,507 - 20,611,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1920,607,507 - 20,611,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01931,617,915 - 31,621,724 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41920,941,254 - 20,945,063 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1919,489,280 - 19,493,089 (+)NCBICelera
Cytogenetic Map19p11NCBI
Cbln1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554337,516,487 - 7,519,929 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554337,516,487 - 7,519,929 (-)NCBIChiLan1.0ChiLan1.0
CBLN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21858,733,418 - 58,736,757 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11664,638,723 - 64,642,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01629,538,723 - 29,542,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11648,427,645 - 48,430,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1648,427,645 - 48,430,512 (-)Ensemblpanpan1.1panPan2
CBLN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1265,974,989 - 65,978,464 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl265,974,981 - 65,977,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha262,551,600 - 62,555,146 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,525,421 - 66,528,966 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,525,139 - 66,528,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1263,348,394 - 63,352,176 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0264,368,563 - 64,372,103 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0265,256,811 - 65,260,596 (+)NCBIUU_Cfam_GSD_1.0
Cbln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934957,092,332 - 57,095,795 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364752,494,156 - 2,496,743 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364752,493,280 - 2,496,738 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBLN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl635,515,754 - 35,519,517 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1635,516,097 - 35,518,080 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Cbln1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247577,264,434 - 7,268,105 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247577,264,425 - 7,267,979 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 20 13 56
Below cutoff 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007992619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000003447   ⟹   ENSCSAP00000001723
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl535,071,051 - 35,075,159 (-)Ensembl
RefSeq Acc Id: XM_007992619   ⟹   XP_007990810
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1535,068,087 - 35,075,215 (-)NCBI
Vero_WHO_p1.0NW_02366604741,428,097 - 41,431,375 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007990810 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001723
  ENSCSAP00000001723.1
Reference Protein Sequences
RefSeq Acc Id: XP_007990810   ⟸   XM_007992619
- UniProtKB: A0A0D9QZD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001723   ⟸   ENSCSAT00000003447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005415 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003447.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report csab:103232507 UniProtKB/TrEMBL
NCBI Gene CBLN1 ENTREZGENE
PANTHER CEREBELLIN-1 UniProtKB/TrEMBL
  CEREBELLIN-RELATED UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A0D9QZD4 ENTREZGENE, UniProtKB/TrEMBL