Gap43 (growth associated protein 43) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Gap43 (growth associated protein 43) Mus musculus
Analyze
Symbol: Gap43
Name: growth associated protein 43
RGD ID: 737443
MGI Page MGI
Description: Predicted to enable calmodulin binding activity and phospholipid binding activity. Acts upstream of or within cell fate commitment and neurogenesis. Located in several cellular components, including axon; plasma membrane; and postsynaptic density. Is expressed in several structures, including alimentary system; genitourinary system; musculature; nervous system; and sensory organ. Orthologous to human GAP43 (growth associated protein 43).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: axonal membrane protein GAP-43; B-50; Ba; Basp2; brain abundant, membrane attached signal protein 2; calmodulin-binding protein P-57; GAP-; GAP-43; growth accentuating protein 43; growth-associated protein 43; neuromodulin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391642,068,915 - 42,161,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1642,068,805 - 42,161,014 (-)EnsemblGRCm39 Ensembl
GRCm381642,248,552 - 42,340,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1642,248,442 - 42,340,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371642,248,665 - 42,340,764 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361642,167,884 - 42,259,983 (-)NCBIMGSCv36mm8
Celera1642,611,179 - 42,699,387 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP,ISO)
(S)-amphetamine  (ISO)
(S)-nicotine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-methyladenine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-D-galactose  (EXP)
amitrole  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
arachidonic acid  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azamethiphos  (ISO)
azoxystrobin  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
butan-1-ol  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
Calcitonin gene-related peptide 1  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (EXP)
carbon nanotube  (EXP)
carbonyl sulfide  (ISO)
carvedilol  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
chlorpyrifos  (ISO)
clobetasol  (EXP)
clorgyline  (ISO)
clotrimazole  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
crocidolite asbestos  (EXP)
cyclophosphamide  (ISO)
cyfluthrin  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (EXP,ISO)
deguelin  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
dieldrin  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dizocilpine maleate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
doxycycline  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
fasudil  (ISO)
fenpyroximate  (ISO)
fenvalerate  (ISO)
fluoxetine  (ISO)
flusilazole  (EXP)
folic acid  (EXP)
fructose  (ISO)
galactose  (EXP)
glyphosate  (ISO)
Goe 6976  (ISO)
heptachlor  (ISO)
imipramine  (ISO)
isophthalic acid  (ISO)
kainic acid  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (EXP)
lovastatin  (EXP,ISO)
Meclizine  (ISO)
megestrol  (ISO)
melatonin  (ISO)
melittin  (EXP)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
Methazolamide  (ISO)
methimazole  (ISO)
Mipafox  (ISO)
N-(3-methyl-5-sulfamoyl-1,3,4-thiadiazol-2-ylidene)acetamide  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel atom  (ISO)
nicotine  (EXP)
Oxadiazon  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paraoxon  (ISO)
paraquat  (ISO)
pentobarbital  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phencyclidine  (ISO)
PhIP  (ISO)
picoxystrobin  (ISO)
potassium chloride  (ISO)
progesterone  (EXP,ISO)
pyrimidifen  (ISO)
quercetin  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
sarin  (ISO)
SB 431542  (ISO)
scopolamine  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulindac  (ISO)
tebufenpyrad  (ISO)
Testosterone propionate  (ISO)
thapsigargin  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
trichlorfon  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
tris(2-chloroethyl) phosphate  (ISO)
Tryptanthrine  (ISO)
tunicamycin  (ISO)
undecane  (ISO)
valproic acid  (EXP,ISO)
verapamil  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
Withanone  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IDA)
cell periphery  (IDA)
cytoplasm  (IBA,IDA)
dendrite  (IEA)
filopodium membrane  (IEA,ISO)
GABA-ergic synapse  (IEA,ISO)
growth cone membrane  (IEA)
perikaryon  (IEA)
plasma membrane  (IBA,IDA,ISO)
postsynaptic density  (IBA,IDA)
presynapse  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Tracking the expression of excitatory and inhibitory neurotransmission-related proteins and neuroplasticity markers after noise induced hearing loss. Browne CJ, etal., PLoS One. 2012;7(3):e33272. doi: 10.1371/journal.pone.0033272. Epub 2012 Mar 12.
2. Intranasal Calcitonin Gene-Related Peptide Protects Against Focal Cerebral Ischemic Injury in Rats Through the Wnt/β-Catenin Pathway. Du Z, etal., Med Sci Monit. 2018 Dec 7;24:8860-8869. doi: 10.12659/MSM.913777.
3. Differential regulation of primary protein kinase C substrate (MARCKS, MLP, GAP-43, RC3) mRNAs in the hippocampus during kainic acid-induced seizures and synaptic reorganization. McNamara RK and Lenox RH, J Neurosci Res. 2000 Nov 1;62(3):416-26.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Human mesenchymal stem cells modulate inflammatory cytokines after spinal cord injury in rat. Urdzíková LM, etal., Int J Mol Sci. 2014 Jun 25;15(7):11275-93. doi: 10.3390/ijms150711275.
Additional References at PubMed
PMID:1374507   PMID:1581634   PMID:1672298   PMID:1774069   PMID:1783381   PMID:1797230   PMID:1889746   PMID:1981057   PMID:1981993   PMID:2442159   PMID:2882955   PMID:2902234  
PMID:3272162   PMID:7558004   PMID:7585944   PMID:7750641   PMID:7859286   PMID:8078103   PMID:8188294   PMID:8358171   PMID:8468045   PMID:8597637   PMID:8613733   PMID:8630490  
PMID:8889548   PMID:8900147   PMID:9050783   PMID:9244437   PMID:9250865   PMID:9344590   PMID:9348347   PMID:9457671   PMID:9658338   PMID:9671659   PMID:9671660   PMID:9753148  
PMID:9831645   PMID:9852588   PMID:9890937   PMID:10051744   PMID:10072298   PMID:10212310   PMID:10349636   PMID:10357937   PMID:10383612   PMID:10430954   PMID:10441734   PMID:10480904  
PMID:10482234   PMID:10482238   PMID:10501973   PMID:10521398   PMID:10640691   PMID:10657302   PMID:10662636   PMID:10850491   PMID:10871284   PMID:10871285   PMID:10882480   PMID:10922068  
PMID:10964493   PMID:11042159   PMID:11044609   PMID:11060461   PMID:11076861   PMID:11135643   PMID:11161469   PMID:11217851   PMID:11493561   PMID:11567059   PMID:11731235   PMID:11753414  
PMID:11756507   PMID:11807832   PMID:11978831   PMID:11988168   PMID:12012374   PMID:12061781   PMID:12091317   PMID:12099903   PMID:12106019   PMID:12210138   PMID:12466851   PMID:12467588  
PMID:12477932   PMID:12495620   PMID:12533617   PMID:12727448   PMID:12794747   PMID:12821646   PMID:12895513   PMID:14610273   PMID:14614146   PMID:14749425   PMID:14973295   PMID:15009129  
PMID:15065125   PMID:15067320   PMID:15071120   PMID:15076712   PMID:15148562   PMID:15173589   PMID:15182301   PMID:15188439   PMID:15191797   PMID:15217086   PMID:15234344   PMID:15261832  
PMID:15306236   PMID:15345747   PMID:15390153   PMID:15456728   PMID:15457507   PMID:15459106   PMID:15489334   PMID:15541311   PMID:15541878   PMID:15579137   PMID:15603741   PMID:15611992  
PMID:15647317   PMID:15648052   PMID:15749074   PMID:15764704   PMID:15935055   PMID:15964824   PMID:15972963   PMID:15998716   PMID:16141072   PMID:16141073   PMID:16195382   PMID:16267219  
PMID:16288735   PMID:16309667   PMID:16309923   PMID:16320235   PMID:16405504   PMID:16421308   PMID:16435363   PMID:16452087   PMID:16452096   PMID:16452166   PMID:16540508   PMID:16602821  
PMID:16606357   PMID:16632597   PMID:16672052   PMID:16679559   PMID:16683987   PMID:16687575   PMID:16715082   PMID:16794332   PMID:16814267   PMID:16880397   PMID:16892058   PMID:17114649  
PMID:17123745   PMID:17131403   PMID:17350283   PMID:17444492   PMID:17470284   PMID:17507395   PMID:17521568   PMID:17554007   PMID:17554085   PMID:17581849   PMID:17582329   PMID:17656621  
PMID:17728008   PMID:17785180   PMID:17880938   PMID:17898206   PMID:17967808   PMID:18024993   PMID:18094027   PMID:18198336   PMID:18235238   PMID:18287559   PMID:18334965   PMID:18351676  
PMID:18371380   PMID:18417704   PMID:18434421   PMID:18460603   PMID:18480279   PMID:18493953   PMID:18552668   PMID:18562289   PMID:18565209   PMID:18588529   PMID:18727047   PMID:18777197  
PMID:18787067   PMID:18799693   PMID:18830272   PMID:18854508   PMID:19027001   PMID:19057620   PMID:19136940   PMID:19204783   PMID:19363153   PMID:19364521   PMID:19437419   PMID:19442238  
PMID:19443652   PMID:19479999   PMID:19521500   PMID:19589379   PMID:19650124   PMID:19686682   PMID:19895561   PMID:19915093   PMID:19961580   PMID:20021484   PMID:20109530   PMID:20133770  
PMID:20188178   PMID:20510229   PMID:20550939   PMID:20648571   PMID:20653027   PMID:20692344   PMID:20707874   PMID:20723208   PMID:20881139   PMID:20882566   PMID:20969844   PMID:21031554  
PMID:21125652   PMID:21147989   PMID:21267068   PMID:21304956   PMID:21345365   PMID:21368052   PMID:21491542   PMID:21518694   PMID:21525298   PMID:21655357   PMID:21677159   PMID:21677750  
PMID:21695168   PMID:21752992   PMID:21873635   PMID:21938722   PMID:22293606   PMID:22349628   PMID:22423107   PMID:22438824   PMID:22451741   PMID:22759196   PMID:22906231   PMID:23064108  
PMID:23085079   PMID:23090999   PMID:23197722   PMID:23228673   PMID:23303943   PMID:23308181   PMID:23396970   PMID:23410787   PMID:23441024   PMID:23462742   PMID:23754371   PMID:23870122  
PMID:23961710   PMID:24001577   PMID:24040182   PMID:24120133   PMID:24154525   PMID:24244461   PMID:24262147   PMID:24378336   PMID:24428937   PMID:24565699   PMID:24576816   PMID:24582971  
PMID:24643061   PMID:24803588   PMID:24952961   PMID:25417106   PMID:25451840   PMID:25704077   PMID:25940069   PMID:26054056   PMID:26302206   PMID:26380950   PMID:26503042   PMID:26534986  
PMID:26658614   PMID:27030765   PMID:27035151   PMID:27091449   PMID:27100196   PMID:27291295   PMID:27611684   PMID:27732850   PMID:27833566   PMID:28185240   PMID:28188885   PMID:28378742  
PMID:28558801   PMID:28747970   PMID:29059194   PMID:29186567   PMID:29382714   PMID:29536590   PMID:30333037   PMID:30348677   PMID:30457570   PMID:30973865   PMID:31209173   PMID:31226418  
PMID:31758234   PMID:31819012   PMID:31845734   PMID:32166136   PMID:32179579   PMID:32325033   PMID:32474139   PMID:32541007   PMID:32675174   PMID:33470495   PMID:33774122   PMID:33832520  
PMID:33871356   PMID:33945466   PMID:34091985   PMID:34184026   PMID:34321999   PMID:35201398   PMID:35347634   PMID:35352947   PMID:36284453   PMID:36417873   PMID:36460641   PMID:37085487  
PMID:37125418   PMID:37142655   PMID:37196079   PMID:37816355   PMID:38187761   PMID:38355793   PMID:38450283   PMID:39168654   PMID:39348458   PMID:39366958   PMID:39367406  


Genomics

Comparative Map Data
Gap43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391642,068,915 - 42,161,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1642,068,805 - 42,161,014 (-)EnsemblGRCm39 Ensembl
GRCm381642,248,552 - 42,340,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1642,248,442 - 42,340,651 (-)EnsemblGRCm38mm10GRCm38
MGSCv371642,248,665 - 42,340,764 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361642,167,884 - 42,259,983 (-)NCBIMGSCv36mm8
Celera1642,611,179 - 42,699,387 (-)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.37NCBI
GAP43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383115,623,510 - 115,721,483 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3115,623,510 - 115,721,490 (+)EnsemblGRCh38hg38GRCh38
GRCh373115,342,357 - 115,440,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363116,825,142 - 116,922,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 343116,825,141 - 116,922,842NCBI
Celera3113,750,041 - 113,848,417 (+)NCBICelera
Cytogenetic Map3q13.31NCBI
HuRef3112,715,632 - 112,815,889 (+)NCBIHuRef
CHM1_13115,305,939 - 115,404,101 (+)NCBICHM1_1
T2T-CHM13v2.03118,343,657 - 118,441,697 (+)NCBIT2T-CHM13v2.0
Gap43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81171,882,131 - 71,975,799 (+)NCBIGRCr8
mRatBN7.21158,376,371 - 58,470,047 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1158,376,371 - 58,470,045 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,189,389 - 67,283,059 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01159,851,686 - 59,945,352 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01158,895,119 - 58,988,732 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01158,624,198 - 58,717,916 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1158,624,198 - 58,717,914 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01162,777,623 - 62,870,998 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,989,085 - 60,083,971 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11160,046,673 - 60,141,558 (+)NCBI
Celera1157,921,205 - 58,014,789 (+)NCBICelera
Cytogenetic Map11q21NCBI
Gap43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542715,695,963 - 15,791,327 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542715,696,549 - 15,791,279 (+)NCBIChiLan1.0ChiLan1.0
GAP43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22113,616,249 - 113,716,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13113,621,025 - 113,721,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03112,765,576 - 112,863,118 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13119,682,743 - 119,780,290 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3119,734,942 - 119,780,290 (+)Ensemblpanpan1.1panPan2
GAP43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13319,668,491 - 19,770,509 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3319,656,835 - 19,770,408 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3319,775,530 - 19,877,471 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03319,917,865 - 20,017,414 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3319,917,886 - 20,017,410 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13319,722,015 - 19,823,783 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03319,768,803 - 19,870,740 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03320,313,727 - 20,415,899 (+)NCBIUU_Cfam_GSD_1.0
Gap43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602134,430,958 - 134,526,139 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365362,995,654 - 3,091,079 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAP43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13144,364,317 - 144,629,174 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113144,364,314 - 144,458,136 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213153,842,841 - 153,937,719 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAP43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12265,142,472 - 65,242,185 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2265,142,039 - 65,242,222 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041101,151,539 - 101,250,605 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gap43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473132,629,477 - 32,749,081 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473132,629,586 - 32,748,515 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gap43
2495 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:469
Count of miRNA genes:323
Interacting mature miRNAs:376
Transcripts:ENSMUST00000102817, ENSMUST00000125187
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301138Pcd4ts3_mp-glycoprotein positive CD4 T cell subset 3 (mouse)Not determined164059392374594076Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
4142187Arrd3_mage-related retinal degeneration 3 (mouse)Not determined3252290965466552Mouse
11522747Eae41_mexperimental allergic encephalomyelitis susceptibility 41 (mouse)164039913478015472Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301070Cypr1_mcytokine production 1 (mouse)Not determined163231279566312933Mouse
4142112Skts-fp3_mskin tumor susceptibility in FVB and PWK 3 (mouse)Not determined164005388172924385Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
10412263Gvhd6_mgraft-versus host disease 6 (mouse)Not determined163606085745511148Mouse
35673309Ari5_mantibody response to influenza 5, day 15, IgG1 (mouse)163982036244520363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
PMC17794P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381642,292,143 - 42,292,307UniSTSGRCm38
MGSCv371642,292,256 - 42,292,420UniSTSGRCm37
Celera1642,654,745 - 42,654,909UniSTS
Cytogenetic Map16B4UniSTS
cM Map1629.5UniSTS
PMC337033P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381642,248,795 - 42,248,951UniSTSGRCm38
MGSCv371642,248,908 - 42,249,064UniSTSGRCm37
Celera1642,611,423 - 42,611,580UniSTS
Cytogenetic Map16B4UniSTS
cM Map1629.5UniSTS
Gap43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371642,248,826 - 42,249,174UniSTSGRCm37
MGSCv371642,248,908 - 42,249,060UniSTSGRCm37
Celera1642,611,341 - 42,611,690UniSTS
Celera1642,611,423 - 42,611,576UniSTS
Cytogenetic Map16B4UniSTS
cM Map1629.5UniSTS
cM Map1629.5UniSTS
WI-18969  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381642,248,696 - 42,248,968UniSTSGRCm38
MGSCv371642,248,809 - 42,249,081UniSTSGRCm37
Celera1642,611,324 - 42,611,597UniSTS
Cytogenetic Map16B4UniSTS
cM Map1629.5UniSTS
GAP43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381642,248,795 - 42,248,947UniSTSGRCm38
MGSCv371642,248,908 - 42,249,060UniSTSGRCm37
Celera1642,611,423 - 42,611,576UniSTS
Cytogenetic Map16B4UniSTS
Gap43  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381642,248,713 - 42,249,061UniSTSGRCm38
MGSCv371642,248,826 - 42,249,174UniSTSGRCm37
Celera1642,611,341 - 42,611,690UniSTS
Cytogenetic Map16B4UniSTS
cM Map1629.5UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000102817   ⟹   ENSMUSP00000099881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1642,068,805 - 42,161,014 (-)Ensembl
GRCm38.p6 Ensembl1642,248,442 - 42,340,651 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1642,068,821 - 42,096,435 (-)Ensembl
GRCm38.p6 Ensembl1642,248,458 - 42,276,072 (-)Ensembl
RefSeq Acc Id: NM_008083   ⟹   NP_032109
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391642,068,915 - 42,161,014 (-)NCBI
GRCm381642,248,552 - 42,340,651 (-)ENTREZGENE
MGSCv371642,248,665 - 42,340,764 (-)RGD
Celera1642,611,179 - 42,699,387 (-)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_032109 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37377 (Get FASTA)   NCBI Sequence Viewer  
  AAH28288 (Get FASTA)   NCBI Sequence Viewer  
  AAH80758 (Get FASTA)   NCBI Sequence Viewer  
  EDK98005 (Get FASTA)   NCBI Sequence Viewer  
  EDK98006 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000099881
  ENSMUSP00000099881.5
GenBank Protein P06837 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032109   ⟸   NM_008083
- UniProtKB: P06837 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000099881   ⟸   ENSMUST00000102817
Protein Domains
IQ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P06837-F1-model_v2 AlphaFold P06837 1-227 view protein structure

Promoters
RGD ID:6827061
Promoter ID:MM_KWN:21020
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000039045
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361642,340,421 - 42,340,921 (-)MPROMDB
RGD ID:8686218
Promoter ID:EPDNEW_M21139
Type:initiation region
Name:Gap43_1
Description:Mus musculus growth associated protein 43 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381642,340,623 - 42,340,683EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95639 AgrOrtholog
Ensembl Genes ENSMUSG00000047261 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000102817 ENTREZGENE
  ENSMUST00000102817.5 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.190 UniProtKB/Swiss-Prot
InterPro IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot
  Neuromodulin UniProtKB/Swiss-Prot
  Neuromodulin_C UniProtKB/Swiss-Prot
  Neuromodulin_gap-junction_N UniProtKB/Swiss-Prot
  Neuromodulin_P_site UniProtKB/Swiss-Prot
  Neuromodulin_palmitoyl_site UniProtKB/Swiss-Prot
KEGG Report mmu:14432 UniProtKB/Swiss-Prot
MGD MGI:95639 ENTREZGENE
NCBI Gene 14432 ENTREZGENE
PANTHER NEUROMODULIN UniProtKB/Swiss-Prot
  NEUROMODULIN UniProtKB/Swiss-Prot
Pfam Neuromodulin UniProtKB/Swiss-Prot
  Neuromodulin_N UniProtKB/Swiss-Prot
  PF00612 UniProtKB/Swiss-Prot
PhenoGen Gap43 PhenoGen
PRINTS NEUROMODULIN UniProtKB/Swiss-Prot
PROSITE NEUROMODULIN_1 UniProtKB/Swiss-Prot
  NEUROMODULIN_2 UniProtKB/Swiss-Prot
  PS50096 UniProtKB/Swiss-Prot
SMART SM00015 UniProtKB/Swiss-Prot
UniProt NEUM_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE