Ntrk3 (neurotrophic tyrosine kinase, receptor, type 3) - Rat Genome Database

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Gene: Ntrk3 (neurotrophic tyrosine kinase, receptor, type 3) Mus musculus
Analyze
Symbol: Ntrk3
Name: neurotrophic tyrosine kinase, receptor, type 3
RGD ID: 737043
MGI Page MGI
Description: Predicted to enable several functions, including GPI-linked ephrin receptor activity; neurotrophin binding activity; and p53 binding activity. Involved in circadian rhythm. Acts upstream of or within several processes, including neurogenesis; neuronal action potential propagation; and positive regulation of nervous system development. Located in cytoplasm. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; genitourinary system; and peripheral nervous system. Human ortholog(s) of this gene implicated in adenoid cystic carcinoma; colorectal cancer; and stomach cancer. Orthologous to human NTRK3 (neurotrophic receptor tyrosine kinase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW125844; GP145-TrkC; neurotrophic tyrosine kinase receptor type 3; neurotrophin-3; NT-3 growth factor receptor; Ntrk3_tv3; Trk; trk-C; TrkC; trkC tyrosine kinase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39777,825,711 - 78,228,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl777,825,707 - 78,387,760 (-)EnsemblGRCm39 Ensembl
GRCm38778,179,986 - 78,581,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl778,175,959 - 78,738,012 (-)EnsemblGRCm38mm10GRCm38
MGSCv37785,337,000 - 85,722,724 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36778,066,072 - 78,451,488 (-)NCBIMGSCv36mm8
Celera775,610,791 - 75,991,488 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
androgen antagonist  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
Butylparaben  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
calcium silicate  (EXP)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (EXP)
corticosterone  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dieldrin  (ISO)
doxorubicin  (ISO)
enzacamene  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
L-methionine  (EXP)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (EXP,ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nitrofen  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentobarbital  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
ponatinib  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sarin  (ISO)
scopolamine  (ISO)
silicon dioxide  (ISO)
terbufos  (ISO)
thimerosal  (EXP)
titanium dioxide  (EXP,ISO)
triclosan  (ISO)
trimethyltin  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
venlafaxine hydrochloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
axon extension involved in regeneration  (IGI)
cell differentiation  (IEA)
cell surface receptor protein tyrosine kinase signaling pathway  (IBA,ISO)
cellular response to nerve growth factor stimulus  (IBA)
cellular response to retinoic acid  (ISO)
circadian rhythm  (IEP)
cochlea development  (ISO)
heart development  (ISO)
lens fiber cell differentiation  (IGI)
mechanoreceptor differentiation  (IMP)
myelination in peripheral nervous system  (IGI)
negative regulation of astrocyte differentiation  (ISO)
negative regulation of protein phosphorylation  (ISO)
nervous system development  (IEA)
neuron fate specification  (ISO)
neuron migration  (ISO)
neuronal action potential propagation  (IGI)
positive regulation of apoptotic process  (IDA)
positive regulation of axon extension involved in regeneration  (IGI)
positive regulation of cell migration  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of ERK1 and ERK2 cascade  (IBA)
positive regulation of gene expression  (ISO)
positive regulation of neuron projection development  (IBA,ISO)
positive regulation of peptidyl-serine phosphorylation  (ISO)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction  (IBA)
positive regulation of positive chemotaxis  (ISO)
positive regulation of synapse assembly  (IDA)
postsynaptic density assembly  (ISO)
regulation of neural precursor cell proliferation  (ISO)
regulation of presynapse assembly  (ISO)
response to axon injury  (ISO)
response to corticosterone  (ISO)
response to ethanol  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aortic valve morphology  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cochlear IHC afferent innervation pattern  (IAGP)
abnormal cochlear nerve morphology  (IAGP)
abnormal cochlear sensory epithelium morphology  (IAGP)
abnormal cranial ganglia morphology  (IAGP)
abnormal eye morphology  (IAGP)
abnormal heart septum morphology  (IAGP)
abnormal heart valve morphology  (IAGP)
abnormal lumbar dorsal root ganglion morphology  (IAGP)
abnormal mitral valve morphology  (IAGP)
abnormal proprioceptive neuron morphology  (IAGP)
abnormal pulmonary vein morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal tricuspid valve morphology  (IAGP)
abnormal truncus arteriosus septation  (IAGP)
absent proprioceptive neurons  (IAGP)
athetotic walking movements  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased litter size  (IAGP)
decreased sensory neuron number  (IAGP)
dilated heart right ventricle  (IAGP)
enlarged heart  (IAGP)
globular heart  (IAGP)
impaired coordination  (IAGP)
impaired limb coordination  (IAGP)
limb grasping  (IAGP)
lung hemorrhage  (IAGP)
microphthalmia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
ostium secundum atrial septal defect  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
pulmonary valve hyperplasia  (IAGP)
pulmonary valve hypertrophy  (IAGP)
pulmonary valve stenosis  (IAGP)
retina ganglion cell degeneration  (IAGP)
small cochlear ganglion  (IAGP)
small L5 dorsal root ganglion  (IAGP)
small nodose ganglion  (IAGP)
small petrosal ganglion  (IAGP)
small trigeminal ganglion  (IAGP)
small vestibular ganglion  (IAGP)
thin retina outer nuclear layer  (IAGP)
ventricular septal defect  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Detection of aberrant methylated SEPT9 and NTRK3 genes in sporadic colorectal cancer patients as a potential diagnostic biomarker. Behrouz Sharif S, etal., Oncol Lett. 2016 Dec;12(6):5335-5343. doi: 10.3892/ol.2016.5327. Epub 2016 Oct 31.
2. Long non-coding RNA LINC00978 promotes cell proliferation and tumorigenesis via regulating microRNA-497/NTRK3 axis in gastric cancer. Bu JY, etal., Int J Biol Macromol. 2019 Feb 15;123:1106-1114. doi: 10.1016/j.ijbiomac.2018.11.162. Epub 2018 Nov 17.
3. Genome-wide analysis identifies critical DNA methylations within NTRKs genes in colorectal cancer. Chen Z, etal., J Transl Med. 2021 Feb 16;19(1):73. doi: 10.1186/s12967-021-02740-6.
4. Target tissue production and axonal transport of neurotrophin-3 are reduced in streptozotocin-diabetic rats. Fernyhough P, etal., Diabetologia. 1998 Mar;41(3):300-6.
5. Gene expression alterations of neurotrophins, their receptors and prohormone convertases in a rat model of spinal cord contusion. Hajebrahimi Z, etal., Neurosci Lett. 2008 Aug 29;441(3):261-6. Epub 2008 Jun 21.
6. TrkC signaling is activated in adenoid cystic carcinoma and requires NT-3 to stimulate invasive behavior. Ivanov SV, etal., Oncogene. 2013 Aug 8;32(32):3698-710. doi: 10.1038/onc.2012.377. Epub 2012 Oct 1.
7. TrkC plays an essential role in breast tumor growth and metastasis. Jin W, etal., Carcinogenesis. 2010 Nov;31(11):1939-47. doi: 10.1093/carcin/bgq180. Epub 2010 Aug 28.
8. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. Neurotrophins and Trk receptors in human pancreatic ductal adenocarcinoma: expression patterns and effects on in vitro invasive behavior. Miknyoczki SJ, etal., Int J Cancer. 1999 May 5;81(3):417-27.
12. Ethanol exposure alters neurotrophin receptor expression in the rat central nervous system: Effects of prenatal exposure. Moore DB, etal., J Neurobiol. 2004 Jul;60(1):101-13. doi: 10.1002/neu.20009.
13. Ethanol exposure alters neurotrophin receptor expression in the rat central nervous system: Effects of neonatal exposure. Moore DB, etal., J Neurobiol. 2004 Jul;60(1):114-26. doi: 10.1002/neu.20010.
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Expression of Trk tyrosine kinase receptor is a biologic marker for cell proliferation and perineural invasion of human pancreatic ductal adenocarcinoma. Sakamoto Y, etal., Oncol Rep. 2001 May-Jun;8(3):477-84.
19. Somatic mutations of GUCY2F, EPHA3, and NTRK3 in human cancers. Wood LD, etal., Hum Mutat. 2006 Oct;27(10):1060-1.
20. Alterations in neurotrophin and neurotrophin receptor gene expression patterns in the rat central nervous system following perinatal Borna disease virus infection. Zocher M, etal., J Neurovirol. 2000 Dec;6(6):462-77.
Additional References at PubMed
PMID:1327010   PMID:1751544   PMID:7588071   PMID:7605908   PMID:7712171   PMID:7991545   PMID:8114702   PMID:8145824   PMID:8223273   PMID:8283230   PMID:8306895   PMID:8530078  
PMID:8575307   PMID:8764654   PMID:8815902   PMID:8841198   PMID:8889548   PMID:8898237   PMID:8918886   PMID:8955272   PMID:9214629   PMID:9217002   PMID:9232598   PMID:9331334  
PMID:9354331   PMID:9364058   PMID:9405689   PMID:9421165   PMID:9472042   PMID:9579688   PMID:9640332   PMID:9699730   PMID:9728914   PMID:9731539   PMID:9736654   PMID:9802700  
PMID:9880597   PMID:9881298   PMID:10207144   PMID:10349636   PMID:10357931   PMID:10383116   PMID:10384880   PMID:10398684   PMID:10414984   PMID:10469347   PMID:10491653   PMID:10588868  
PMID:10619477   PMID:10674466   PMID:10842362   PMID:10850491   PMID:10854035   PMID:11042159   PMID:11076861   PMID:11114734   PMID:11152640   PMID:11160433   PMID:11217851   PMID:11295244  
PMID:11322334   PMID:11356021   PMID:11395003   PMID:11466433   PMID:11487640   PMID:11493560   PMID:11498051   PMID:11684666   PMID:11877382   PMID:11988169   PMID:12021070   PMID:12062038  
PMID:12093746   PMID:12117822   PMID:12122447   PMID:12352981   PMID:12388556   PMID:12466851   PMID:12477932   PMID:12495620   PMID:12532410   PMID:12732177   PMID:12774239   PMID:12787506  
PMID:12810600   PMID:12941481   PMID:14507777   PMID:14550777   PMID:14568546   PMID:14614136   PMID:14614961   PMID:14622193   PMID:14648839   PMID:14668342   PMID:14681479   PMID:14706643  
PMID:15140017   PMID:15247919   PMID:15322547   PMID:15376326   PMID:15497153   PMID:15530548   PMID:15550985   PMID:15558783   PMID:15561438   PMID:15726425   PMID:15820690   PMID:15836427  
PMID:16037097   PMID:16141072   PMID:16141073   PMID:16142215   PMID:16183241   PMID:16183868   PMID:16368089   PMID:16446142   PMID:16510500   PMID:16602821   PMID:16673387   PMID:16963267  
PMID:17007838   PMID:17101216   PMID:17116257   PMID:17190606   PMID:17254333   PMID:17396120   PMID:17442456   PMID:17543035   PMID:17584746   PMID:17967808   PMID:17991742   PMID:18203754  
PMID:18287559   PMID:18385258   PMID:18438927   PMID:18498732   PMID:18498735   PMID:18719589   PMID:18752272   PMID:18839409   PMID:18848646   PMID:19029029   PMID:19291307   PMID:19322198  
PMID:19361496   PMID:19421194   PMID:19610111   PMID:19631204   PMID:19698958   PMID:19838179   PMID:19936227   PMID:20034568   PMID:20064391   PMID:20064392   PMID:20096094   PMID:20133677  
PMID:20213756   PMID:20436479   PMID:20457670   PMID:20534675   PMID:20553714   PMID:20565848   PMID:20574020   PMID:20626560   PMID:20692345   PMID:20811452   PMID:20844136   PMID:21117150  
PMID:21262467   PMID:21267068   PMID:21300867   PMID:21364975   PMID:21510873   PMID:21529369   PMID:21543603   PMID:21562748   PMID:21681751   PMID:21734270   PMID:21791286   PMID:21795538  
PMID:21804605   PMID:21873635   PMID:21945863   PMID:21957238   PMID:22048155   PMID:22103411   PMID:22235033   PMID:22253804   PMID:22318233   PMID:22326227   PMID:22345400   PMID:22514301  
PMID:22586713   PMID:22837474   PMID:22903063   PMID:22906231   PMID:22980123   PMID:23029089   PMID:23136392   PMID:23382219   PMID:23393595   PMID:23418536   PMID:23426664   PMID:23516305  
PMID:23522042   PMID:23591430   PMID:23648511   PMID:23652629   PMID:23701859   PMID:23785138   PMID:23790753   PMID:23792428   PMID:23798677   PMID:23954828   PMID:24027274   PMID:24034695  
PMID:24048855   PMID:24173031   PMID:24198358   PMID:24210822   PMID:24357327   PMID:24453327   PMID:24516396   PMID:24613359   PMID:24637732   PMID:24733831   PMID:24885223   PMID:24952961  
PMID:25131634   PMID:25359972   PMID:25417164   PMID:25433207   PMID:25661788   PMID:25885041   PMID:25942625   PMID:26061886   PMID:26212662   PMID:26356988   PMID:26476841   PMID:26687362  
PMID:26758845   PMID:26857994   PMID:26988119   PMID:27076431   PMID:27086544   PMID:27695040   PMID:28007784   PMID:28041852   PMID:28167615   PMID:28360836   PMID:28434802   PMID:28476948  
PMID:28558017   PMID:28706196   PMID:28829946   PMID:29031500   PMID:29162704   PMID:29242588   PMID:29445148   PMID:29472841   PMID:29569362   PMID:29864146   PMID:29874580   PMID:30071216  
PMID:30126905   PMID:30252950   PMID:30408082   PMID:30415995   PMID:30661738   PMID:30794158   PMID:30917305   PMID:30917309   PMID:31152445   PMID:31248728   PMID:31311957   PMID:31515492  
PMID:31526806   PMID:31663646   PMID:31801063   PMID:32826903   PMID:32880858   PMID:33649316   PMID:33723434   PMID:33789102   PMID:34321999   PMID:34402594   PMID:34508100   PMID:34580157  
PMID:34727520   PMID:34789880   PMID:35364055   PMID:35462405   PMID:35713404   PMID:35790771   PMID:36074819   PMID:36171207   PMID:36303068   PMID:36334588   PMID:36418415   PMID:36763499  
PMID:36765071   PMID:36882590   PMID:37269288   PMID:37725982   PMID:38025786   PMID:38167468   PMID:38187761   PMID:38346162   PMID:38351062   PMID:38451068  


Genomics

Comparative Map Data
Ntrk3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39777,825,711 - 78,228,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl777,825,707 - 78,387,760 (-)EnsemblGRCm39 Ensembl
GRCm38778,179,986 - 78,581,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl778,175,959 - 78,738,012 (-)EnsemblGRCm38mm10GRCm38
MGSCv37785,337,000 - 85,722,724 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36778,066,072 - 78,451,488 (-)NCBIMGSCv36mm8
Celera775,610,791 - 75,991,488 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map744.01NCBI
NTRK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381587,859,751 - 88,256,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1587,859,751 - 88,256,791 (-)EnsemblGRCh38hg38GRCh38
GRCh371588,402,982 - 88,799,970 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361586,220,992 - 86,600,665 (-)NCBINCBI36Build 36hg18NCBI36
Build 341586,220,991 - 86,600,665NCBI
Celera1564,821,267 - 65,200,916 (-)NCBICelera
Cytogenetic Map15q25.3NCBI
HuRef1564,532,241 - 64,911,404 (-)NCBIHuRef
CHM1_11588,261,800 - 88,641,816 (-)NCBICHM1_1
T2T-CHM13v2.01585,614,323 - 86,011,407 (-)NCBIT2T-CHM13v2.0
Ntrk3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,526,192 - 141,913,575 (-)NCBIGRCr8
mRatBN7.21132,116,472 - 132,503,849 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1132,132,849 - 132,503,286 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1140,038,778 - 140,410,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01147,208,513 - 147,579,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01140,126,320 - 140,497,270 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01139,890,537 - 140,262,503 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1139,890,560 - 140,262,503 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01140,868,261 - 141,239,954 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41133,925,530 - 134,302,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,003,872 - 134,380,482 (-)NCBI
Celera1124,206,109 - 124,576,015 (-)NCBICelera
Cytogenetic Map1q31NCBI
Ntrk3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541616,652,791 - 17,018,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541616,652,931 - 17,018,188 (+)NCBIChiLan1.0ChiLan1.0
NTRK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21677,421,258 - 77,808,559 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11581,101,703 - 81,513,473 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01566,566,219 - 66,953,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11585,776,819 - 86,157,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1585,776,832 - 86,157,204 (-)Ensemblpanpan1.1panPan2
NTRK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1351,131,470 - 51,491,112 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl351,138,751 - 51,513,024 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha353,770,192 - 54,150,627 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0351,548,386 - 51,933,727 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl351,554,220 - 51,933,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1351,071,744 - 51,456,495 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0351,281,270 - 51,665,830 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0351,620,674 - 52,005,592 (-)NCBIUU_Cfam_GSD_1.0
Ntrk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640132,042,602 - 132,426,830 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648313,909,109 - 14,291,887 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648313,912,904 - 14,291,881 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTRK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1191,535,301 - 191,925,327 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11191,535,262 - 191,941,675 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,938,371 - 213,258,768 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NTRK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1296,441,824 - 6,831,029 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl296,447,256 - 6,830,526 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605940,018,915 - 40,410,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntrk3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476815,252,354 - 15,619,601 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476815,239,111 - 15,619,979 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ntrk3
14227 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:561
Count of miRNA genes:372
Interacting mature miRNAs:423
Transcripts:ENSMUST00000039431, ENSMUST00000039438, ENSMUST00000151885, ENSMUST00000155795
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
13513914Heal52_mwound healing/ regeneration 52 (mouse)77355037278591455Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse

Markers in Region
AW125844  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38778,300,980 - 78,301,127UniSTSGRCm38
MGSCv37785,445,866 - 85,446,013UniSTSGRCm37
Celera775,713,425 - 75,713,572UniSTS
Cytogenetic Map7D3UniSTS
cM Map739.0UniSTS
Whitehead/MRC_RH7784.07UniSTS
D7Mit214  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38778,556,370 - 78,556,505UniSTSGRCm38
MGSCv37785,701,256 - 85,701,391UniSTSGRCm37
Celera775,970,004 - 75,970,141UniSTS
Cytogenetic Map7D3UniSTS
cM Map737.0UniSTS
Whitehead Genetic728.4UniSTS
Whitehead_YAC7 UniSTS
Ntrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37785,606,505 - 85,606,609UniSTSGRCm37
Celera775,875,478 - 75,875,582UniSTS
Cytogenetic Map7D3UniSTS
cM Map739.0UniSTS
cM Map739.0UniSTS
D1UIA12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38778,282,611 - 78,282,709UniSTSGRCm38
MGSCv37785,427,497 - 85,427,595UniSTSGRCm37
Celera775,695,153 - 75,695,257UniSTS
Cytogenetic Map7D3UniSTS
cM Map739.0UniSTS
BE106688  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38778,192,409 - 78,192,575UniSTSGRCm38
MGSCv37785,337,295 - 85,337,461UniSTSGRCm37
Cytogenetic Map7D3UniSTS
cM Map739.0UniSTS
Ntrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7D3UniSTS
Ntrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7D3UniSTS
Ntrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7D3UniSTS
Ntrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38778,461,619 - 78,461,723UniSTSGRCm38
MGSCv37785,606,505 - 85,606,609UniSTSGRCm37
Celera775,875,478 - 75,875,582UniSTS
Cytogenetic Map7D3UniSTS
cM Map739.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_182809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006540692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC110225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC115868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC121082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY336094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE950984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ323598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ323599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF410102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF417977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000039431   ⟹   ENSMUSP00000037909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,825,707 - 78,228,156 (-)Ensembl
GRCm38.p6 Ensembl778,175,959 - 78,578,408 (-)Ensembl
RefSeq Acc Id: ENSMUST00000039438   ⟹   ENSMUSP00000038324
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,950,438 - 78,227,730 (-)Ensembl
GRCm38.p6 Ensembl778,300,690 - 78,577,982 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,952,071 - 78,027,570 (-)Ensembl
GRCm38.p6 Ensembl778,302,323 - 78,377,822 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,099,373 - 78,227,723 (-)Ensembl
GRCm38.p6 Ensembl778,449,625 - 78,577,975 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193002   ⟹   ENSMUSP00000141534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,842,155 - 78,227,537 (-)Ensembl
GRCm38.p6 Ensembl778,192,407 - 78,577,789 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195262   ⟹   ENSMUSP00000141599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,842,128 - 78,227,531 (-)Ensembl
GRCm38.p6 Ensembl778,192,380 - 78,577,783 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,005,843 - 78,101,871 (-)Ensembl
GRCm38.p6 Ensembl778,356,095 - 78,452,123 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205354   ⟹   ENSMUSP00000145681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,830,631 - 77,842,491 (-)Ensembl
GRCm38.p6 Ensembl778,180,883 - 78,192,743 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,380,228 - 78,387,760 (-)Ensembl
GRCm38.p6 Ensembl778,730,480 - 78,738,012 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,166,498 - 78,273,090 (-)Ensembl
GRCm38.p6 Ensembl778,516,750 - 78,623,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205868   ⟹   ENSMUSP00000145689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,897,136 - 77,911,635 (-)Ensembl
GRCm38.p6 Ensembl778,247,388 - 78,261,887 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206091   ⟹   ENSMUSP00000145958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,227,284 - 78,307,472 (-)Ensembl
GRCm38.p6 Ensembl778,577,536 - 78,657,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,127,659 - 78,221,639 (-)Ensembl
GRCm38.p6 Ensembl778,477,911 - 78,571,891 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206268   ⟹   ENSMUSP00000146188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,167,232 - 78,228,151 (-)Ensembl
GRCm38.p6 Ensembl778,517,484 - 78,578,403 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,376,452 - 78,387,760 (-)Ensembl
GRCm38.p6 Ensembl778,726,704 - 78,738,012 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206599   ⟹   ENSMUSP00000145774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl777,952,379 - 78,005,881 (-)Ensembl
GRCm38.p6 Ensembl778,302,631 - 78,356,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,244,171 - 78,307,857 (-)Ensembl
GRCm38.p6 Ensembl778,594,423 - 78,658,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,230,814 - 78,367,968 (-)Ensembl
GRCm38.p6 Ensembl778,581,066 - 78,718,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,237,124 - 78,387,758 (-)Ensembl
GRCm38.p6 Ensembl778,587,376 - 78,738,010 (-)Ensembl
RefSeq Acc Id: ENSMUST00000206949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl778,227,554 - 78,228,446 (-)Ensembl
GRCm38.p6 Ensembl778,577,806 - 78,578,698 (-)Ensembl
RefSeq Acc Id: NM_008746   ⟹   NP_032772
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,841,862 - 78,227,586 (-)NCBI
GRCm38778,192,114 - 78,577,838 (-)NCBI
MGSCv37785,337,000 - 85,722,724 (-)RGD
Celera775,610,791 - 75,991,488 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_182809   ⟹   NP_877961
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,950,438 - 78,227,586 (-)NCBI
GRCm38778,300,690 - 78,577,838 (-)NCBI
MGSCv37785,337,000 - 85,722,724 (-)RGD
Celera775,610,791 - 75,991,488 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006540692   ⟹   XP_006540755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,950,438 - 78,228,187 (-)NCBI
GRCm38778,300,690 - 78,578,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250817   ⟹   XP_011249119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
GRCm38778,180,879 - 78,578,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152766   ⟹   XP_036008659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,865 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036152767   ⟹   XP_036008660
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934034
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934035
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934036
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934037
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934038
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934039
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934040
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39777,825,711 - 78,228,187 (-)NCBI
Sequence:
RefSeq Acc Id: NP_032772   ⟸   NM_008746
- Peptide Label: isoform a precursor
- UniProtKB: Q9Z2P9 (UniProtKB/Swiss-Prot),   A4QPD0 (UniProtKB/Swiss-Prot),   Q9Z2Q0 (UniProtKB/Swiss-Prot),   Q6VNS1 (UniProtKB/Swiss-Prot),   A0A0A6YWL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_877961   ⟸   NM_182809
- Peptide Label: isoform b precursor
- UniProtKB: Q6VNS1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006540755   ⟸   XM_006540692
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011249119   ⟸   XM_011250817
- Peptide Label: isoform X2
- UniProtKB: A0A0A6YWF9 (UniProtKB/TrEMBL),   A0A0A6YWL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000145958   ⟸   ENSMUST00000206091
RefSeq Acc Id: ENSMUSP00000146188   ⟸   ENSMUST00000206268
RefSeq Acc Id: ENSMUSP00000145774   ⟸   ENSMUST00000206599
RefSeq Acc Id: ENSMUSP00000145689   ⟸   ENSMUST00000205868
RefSeq Acc Id: ENSMUSP00000145681   ⟸   ENSMUST00000205354
RefSeq Acc Id: ENSMUSP00000141534   ⟸   ENSMUST00000193002
RefSeq Acc Id: ENSMUSP00000038324   ⟸   ENSMUST00000039438
RefSeq Acc Id: ENSMUSP00000037909   ⟸   ENSMUST00000039431
RefSeq Acc Id: ENSMUSP00000141599   ⟸   ENSMUST00000195262
RefSeq Acc Id: XP_036008659   ⟸   XM_036152766
- Peptide Label: isoform X1
- UniProtKB: A0A0A6YWL7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036008660   ⟸   XM_036152767
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VNS1-F1-model_v2 AlphaFold Q6VNS1 1-825 view protein structure

Promoters
RGD ID:8664469
Promoter ID:EPDNEW_M10265
Type:multiple initiation site
Name:Ntrk3_1
Description:Mus musculus neurotrophic tyrosine kinase, receptor, type 3 ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38778,577,809 - 78,577,869EPDNEW
RGD ID:6842282
Promoter ID:MM_KWN:51201
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000050045,   UC009HXG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36785,523,361 - 85,523,861 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97385 AgrOrtholog
Ensembl Genes ENSMUSG00000059146 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039431 ENTREZGENE
  ENSMUST00000039431.14 UniProtKB/Swiss-Prot
  ENSMUST00000039438 ENTREZGENE
  ENSMUST00000039438.9 UniProtKB/Swiss-Prot
  ENSMUST00000193002 ENTREZGENE
  ENSMUST00000193002.6 UniProtKB/TrEMBL
  ENSMUST00000195262.6 UniProtKB/TrEMBL
  ENSMUST00000205354.2 UniProtKB/TrEMBL
  ENSMUST00000205868.2 UniProtKB/TrEMBL
  ENSMUST00000206091.2 UniProtKB/TrEMBL
  ENSMUST00000206268.2 UniProtKB/TrEMBL
  ENSMUST00000206599.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTRK_C2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kin_neurotrophic_rcpt_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_NGF_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_kinase_rcpt_2_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18213 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97385 ENTREZGENE
NCBI Gene 18213 ENTREZGENE
PANTHER NT-3 GROWTH FACTOR RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYROSINE-PROTEIN KINASE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase_Tyr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPKR_C2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ntrk3 PhenoGen
PRINTS NTKRECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NTKRECEPTOR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RECEPTOR_TYR_KIN_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LRRCT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRRNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TyrKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YWF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YWL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RNS2_MOUSE UniProtKB/TrEMBL
  A0A0U1RNS9_MOUSE UniProtKB/TrEMBL
  A0A0U1RP04_MOUSE UniProtKB/TrEMBL
  A0A0U1RPF1_MOUSE UniProtKB/TrEMBL
  A0A0U1RPZ9_MOUSE UniProtKB/TrEMBL
  A4QPD0 ENTREZGENE
  A9X3Y4_MOUSE UniProtKB/TrEMBL
  A9X3Y5_MOUSE UniProtKB/TrEMBL
  F5BYH5_MOUSE UniProtKB/TrEMBL
  NTRK3_MOUSE UniProtKB/Swiss-Prot
  Q3TNY3_MOUSE UniProtKB/TrEMBL
  Q3TP58_MOUSE UniProtKB/TrEMBL
  Q3TRX1_MOUSE UniProtKB/TrEMBL
  Q6VNS1 ENTREZGENE
  Q9Z2P9 ENTREZGENE
  Q9Z2Q0 ENTREZGENE
UniProt Secondary A4QPD0 UniProtKB/Swiss-Prot
  Q9Z2P9 UniProtKB/Swiss-Prot
  Q9Z2Q0 UniProtKB/Swiss-Prot