Prickle2 (prickle planar cell polarity protein 2) - Rat Genome Database
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Gene: Prickle2 (prickle planar cell polarity protein 2) Mus musculus
Analyze
Symbol: Prickle2
Name: prickle planar cell polarity protein 2
RGD ID: 1552513
MGI Page MGI
Description: Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; notochord; and primitive streak. Orthologous to human PRICKLE2 (prickle planar cell polarity protein 2); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; Wnt signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine; 3-methylcholanthrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 6230400G14Rik; 6720451F06Rik; mpk; mpk2; prickle homolog 2; prickle-like 2; prickle-like protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,347,873 - 92,683,464 (-)NCBIGRCm39mm39
GRCm39 Ensembl692,347,889 - 92,683,136 (-)Ensembl
GRCm38692,370,891 - 92,706,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,370,908 - 92,706,155 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,320,886 - 92,656,178 (-)NCBIGRCm37mm9NCBIm37
MGSCv36692,341,450 - 92,671,688 (-)NCBImm8
Celera694,262,178 - 94,597,798 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12525887   PMID:14610273   PMID:15489334   PMID:15618518   PMID:16141072   PMID:16141073   PMID:16452087  
PMID:16487141   PMID:17114649   PMID:17376975   PMID:17868671   PMID:17937400   PMID:18287559   PMID:18976727   PMID:19334288   PMID:19706528   PMID:19788910   PMID:20126399   PMID:21267068  
PMID:21276947   PMID:21316586   PMID:21324980   PMID:21386911   PMID:22008794   PMID:22218901   PMID:22333836   PMID:22363783   PMID:23122850   PMID:23177622   PMID:23711981   PMID:23986237  
PMID:24056908   PMID:24708399   PMID:24938409   PMID:26989192   PMID:27155041   PMID:27378169   PMID:27612405   PMID:28266911   PMID:28292423   PMID:28935705   PMID:29510119   PMID:30814664  
PMID:31068622   PMID:32325033   PMID:32581705   PMID:33141892  


Genomics

Comparative Map Data
Prickle2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39692,347,873 - 92,683,464 (-)NCBIGRCm39mm39
GRCm39 Ensembl692,347,889 - 92,683,136 (-)Ensembl
GRCm38692,370,891 - 92,706,334 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl692,370,908 - 92,706,155 (-)EnsemblGRCm38mm10GRCm38
MGSCv37692,320,886 - 92,656,178 (-)NCBIGRCm37mm9NCBIm37
MGSCv36692,341,450 - 92,671,688 (-)NCBImm8
Celera694,262,178 - 94,597,798 (-)NCBICelera
Cytogenetic Map6D1NCBI
PRICKLE2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl364,092,236 - 64,445,476 (-)EnsemblGRCh38hg38GRCh38
GRCh38364,092,236 - 64,445,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37364,077,912 - 64,253,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36364,054,587 - 64,186,171 (-)NCBINCBI36hg18NCBI36
Build 34364,054,590 - 64,186,171NCBI
Celera364,096,295 - 64,227,889 (-)NCBI
Cytogenetic Map3p14.1NCBI
HuRef364,176,650 - 64,308,225 (-)NCBIHuRef
CHM1_1364,030,867 - 64,162,475 (-)NCBICHM1_1
Prickle2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24124,869,552 - 125,214,862 (-)NCBI
Rnor_6.0 Ensembl4124,238,167 - 124,338,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04124,238,167 - 124,584,176 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04188,680,318 - 189,025,114 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,571,461 - 126,920,730 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14126,820,833 - 126,938,959 (-)NCBI
Celera4113,786,958 - 114,131,482 (-)NCBICelera
Cytogenetic Map4q34NCBI
Prickle2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555171,501,706 - 1,802,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555171,501,322 - 1,806,996 (+)NCBIChiLan1.0ChiLan1.0
PRICKLE2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1365,374,853 - 65,723,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl365,377,760 - 65,723,662 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0363,995,566 - 64,347,679 (-)NCBIMhudiblu_PPA_v0panPan3
PRICKLE2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2026,809,958 - 27,220,057 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12026,810,167 - 27,131,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Prickle2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366372,225,400 - 2,299,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1345,620,367 - 45,968,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11345,620,372 - 45,968,295 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21350,094,626 - 50,263,960 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12225,128,160 - 25,481,385 (-)NCBI
ChlSab1.1 Ensembl2225,133,352 - 25,303,131 (-)Ensembl
Prickle2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248881,537,080 - 1,825,955 (+)NCBI

Position Markers
D6Mit284  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,607,306 - 92,607,450UniSTSGRCm38
MGSCv37692,557,300 - 92,557,444UniSTSGRCm37
Celera694,498,949 - 94,499,085UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.5UniSTS
Whitehead Genetic630.6UniSTS
Whitehead/MRC_RH6948.23UniSTS
Whitehead_YAC6 UniSTS
AI385205  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,564,699 - 92,564,880UniSTSGRCm38
MGSCv37692,514,693 - 92,514,874UniSTSGRCm37
Celera694,456,411 - 94,456,592UniSTS
Cytogenetic Map6D1UniSTS
STS-R99346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38692,564,771 - 92,564,959UniSTSGRCm38
MGSCv37692,514,765 - 92,514,953UniSTSGRCm37
Celera694,456,483 - 94,456,671UniSTS
Cytogenetic Map6D1UniSTS
Prickle2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
cM Map641.05UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
1301534Idd20_minsulin dependent diabetes susceptibility 20 (mouse)Not determined69203995092716697Mouse
11532719Sluc45_msusceptibility to lung cancer 45 (mouse)69260730698258933Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5306
Count of miRNA genes:770
Interacting mature miRNAs:1037
Transcripts:ENSMUST00000032093, ENSMUST00000113445, ENSMUST00000113446, ENSMUST00000113447
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001134459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001134460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001134461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02069274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI850364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB857589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032093   ⟹   ENSMUSP00000032093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,370,908 - 92,706,155 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113445   ⟹   ENSMUSP00000109072
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,375,384 - 92,481,392 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113446   ⟹   ENSMUSP00000109073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,370,910 - 92,534,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113447   ⟹   ENSMUSP00000109074
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl692,370,908 - 92,567,366 (-)Ensembl
RefSeq Acc Id: NM_001081146   ⟹   NP_001074615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,873 - 92,683,165 (-)NCBI
GRCm38692,370,892 - 92,706,184 (-)NCBI
MGSCv37692,320,886 - 92,656,178 (-)RGD
Celera694,262,178 - 94,597,798 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001134459   ⟹   NP_001127931
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,873 - 92,511,842 (-)NCBI
GRCm38692,370,892 - 92,534,861 (-)NCBI
MGSCv37692,320,886 - 92,656,178 (-)RGD
Celera694,262,178 - 94,597,798 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001134460   ⟹   NP_001127932
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,873 - 92,458,373 (-)NCBI
GRCm38692,370,892 - 92,481,392 (-)NCBI
MGSCv37692,320,886 - 92,656,178 (-)RGD
Celera694,262,178 - 94,597,798 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001134461   ⟹   NP_001127933
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,873 - 92,544,347 (-)NCBI
GRCm38692,370,892 - 92,567,366 (-)NCBI
MGSCv37692,320,886 - 92,656,178 (-)RGD
Celera694,262,178 - 94,597,798 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506106   ⟹   XP_006506169
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,876 - 92,683,464 (-)NCBI
GRCm38692,370,891 - 92,706,334 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255385   ⟹   XP_030111245
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,889 - 92,602,660 (-)NCBI
GRCm38692,370,908 - 92,642,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166119   ⟹   XP_036022012
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39692,347,876 - 92,458,650 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001074615   ⟸   NM_001081146
- Peptide Label: isoform a
- UniProtKB: A7YQ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001127933   ⟸   NM_001134461
- Peptide Label: isoform b
- UniProtKB: Q80Y24 (UniProtKB/Swiss-Prot),   A7YQ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001127931   ⟸   NM_001134459
- Peptide Label: isoform b
- UniProtKB: Q80Y24 (UniProtKB/Swiss-Prot),   A7YQ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001127932   ⟸   NM_001134460
- Peptide Label: isoform b
- UniProtKB: Q80Y24 (UniProtKB/Swiss-Prot),   A7YQ68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506169   ⟸   XM_006506106
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030111245   ⟸   XM_030255385
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000032093   ⟸   ENSMUST00000032093
RefSeq Acc Id: ENSMUSP00000109072   ⟸   ENSMUST00000113445
RefSeq Acc Id: ENSMUSP00000109074   ⟸   ENSMUST00000113447
RefSeq Acc Id: ENSMUSP00000109073   ⟸   ENSMUST00000113446
RefSeq Acc Id: XP_036022012   ⟸   XM_036166119
- Peptide Label: isoform X3
Protein Domains
LIM zinc-binding   PET

Promoters
RGD ID:6839784
Promoter ID:MM_KWN:46953
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001134460
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36692,430,859 - 92,431,359 (-)MPROMDB
RGD ID:6890476
Promoter ID:EPDNEW_M8689
Type:initiation region
Name:Prickle2_2
Description:Mus musculus prickle planar cell polarity protein 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8690  EPDNEW_M8691  EPDNEW_M8692  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38692,481,377 - 92,481,437EPDNEW
RGD ID:6839782
Promoter ID:MM_KWN:46954
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B4,   MEF_B6
Transcripts:NM_001134459
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36692,484,654 - 92,485,154 (-)MPROMDB
RGD ID:6890478
Promoter ID:EPDNEW_M8690
Type:single initiation site
Name:Prickle2_4
Description:Mus musculus prickle planar cell polarity protein 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8689  EPDNEW_M8691  EPDNEW_M8692  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38692,530,110 - 92,530,170EPDNEW
RGD ID:6890480
Promoter ID:EPDNEW_M8691
Type:initiation region
Name:Prickle2_1
Description:Mus musculus prickle planar cell polarity protein 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8689  EPDNEW_M8690  EPDNEW_M8692  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38692,534,871 - 92,534,931EPDNEW
RGD ID:6890482
Promoter ID:EPDNEW_M8692
Type:single initiation site
Name:Prickle2_3
Description:Mus musculus prickle planar cell polarity protein 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8689  EPDNEW_M8690  EPDNEW_M8691  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38692,567,375 - 92,567,435EPDNEW
RGD ID:6839780
Promoter ID:MM_KWN:46957
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:NM_001081146
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36692,656,049 - 92,656,549 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925144 AgrOrtholog
Ensembl Genes ENSMUSG00000030020 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032093 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109072 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109073 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109074 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032093 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113445 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113446 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113447 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro LIM1_prickle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM2_prickle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM3_prickle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET_prickle UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:243548 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1925144 ENTREZGENE
NCBI Gene 243548 ENTREZGENE
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prickle2 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PET UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A7YQ68 ENTREZGENE, UniProtKB/TrEMBL
  PRIC2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6H652 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Prickle2  prickle planar cell polarity protein 2    prickle homolog 2  Symbol and/or name change 5135510 APPROVED
2016-02-02 Prickle2  prickle homolog 2    prickle homolog 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED