D9Rat151 Marker Search Result - Rat Genome Database

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Marker: D9Rat151

Symbol: D9Rat151
Previously known as: oxsts11669; R0241-B01; 
RGD ID: 40282
Expected Size: 125 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2933,449,939 - 33,450,064 (+)MAPPERmRatBN7.2
Rnor_6.0937,492,138 - 37,492,262NCBIRnor6.0
Rnor_5.0936,296,544 - 36,296,668UniSTSRnor5.0
RGSC_v3.4929,873,588 - 29,873,709RGDRGSC3.4
RGSC_v3.4929,873,589 - 29,873,713UniSTSRGSC3.4
RGSC_v3.1929,875,002 - 29,875,123RGD
Celera931,267,966 - 31,268,090UniSTS
FHH x ACI Map922.5UniSTS
FHH x ACI Map922.5RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CAGTAACATCACACACACATGCT
Reverse Primer CGTTTTGCTCCTGAACTTCC
 
Template 
AGTCGACTCTAGAGGATCCCCCTTGGACAGGTAGATGTAAATTTGTTGTTAACTCTATTTCTTC
GTTTTGCTCCTGAACTTCCTGCTGTGAAGTGTGTGAGTGTGTGTGTGTGTGTGTGTAGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCATGTGTGTGTGATGTTACTGNTGA
GAGTNTACTGTGTTCCGGTNTTGCGGGAGAGACCAGAAATTGATTNCAGCAGCATGCATTGAGG
CACCCTTTGTGTGATAAGACCAGGGGTACCGAGACNCGAATTNCTAATCATGGTTCATAGNTGT
TTTCCTGTGTGAAATTGTTATCCGCNCACAATTCCACACAACATACGAGCGGAAGCATAAAGTG
TAAAGCCGGGGTGCCTAATGAGTGAGCAACTCACATTAATTGCGTTGCGCNCACTGC
Strain, Expected Size(s)

ACI/N 137 AVN/Orl 127 BBDP/Rhw 127
BBDR/Rhw 127 BC/CpbU 127 BDIX/Han 127
BDVII/Cub 135 BN-Lx/Cub 127 BN/SsNHsd 127
BP/Cub 127 BUF/Pit 127 COP/OlaHsd 133
DA/PitN 127 DON/Melb 127 F344/Pit 127
FHH/Eur 127 GH/Omr 127 GK/KyoSwe 127
LE/Mol 127 LEW/Pit 127 LH/Mav 127
LN/Mav 127 LOU/CHan 127 M520/N 127
MHS/Gib 127 MNR/N 127 MNS/Gib 127
MR/Pit 127 NEDH/K 133 NP9 127
ODU/N 127 OKA/Wsl 127 PVG/Pit 127
SD/Rij 127 SHR/OlaHsd 127 SHRSP/Riv 127
SR/Jr 127 SS/Jr 127 WAG/RijKyo 127
WF/Pit 127 WIST/Nhg 125 WKY/OlaHsd 127
WN/N 127 WTC/Kyo 127


GenBank Nucleotide CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat

1 to 10 of 30 rows