D10Rat5 Marker Search Result - Rat Genome Database

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Marker: D10Rat5

Symbol: D10Rat5
Previously known as: oxsts5981; R036-D01; R0036-D01; 
RGD ID: 36494
Expected Size: 172 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210103,349,037 - 103,349,209 (+)MAPPERmRatBN7.2
Rnor_6.010107,144,792 - 107,144,963NCBIRnor6.0
Rnor_5.010106,780,409 - 106,780,580UniSTSRnor5.0
RGSC_v3.410108,116,569 - 108,116,741RGDRGSC3.4
RGSC_v3.410108,116,570 - 108,116,741UniSTSRGSC3.4
RGSC_v3.110108,131,073 - 108,131,245RGD
Celera10101,910,877 - 101,911,048UniSTS
RH 2.0 Map101359.2RGD
SHRSP x BN Map1089.9RGD
Cytogenetic Map10q32.3UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Dnah17  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer ACAACATCTGCCTCACCACA
Reverse Primer TGGGATTGCTTGTTCCAGAC
 
Strain, Expected Size(s)

ACI/N 171 AVN/Orl 171 BBDP/Rhw 165
BBDR/Rhw 165 BC/CpbU 171 BDIX/Han 165
BDVII/Cub 171 BN-Lx/Cub 171 BN/SsNHsd 171
BP/Cub 165 BUF/Pit 165 COP/OlaHsd 165
DA/PitN 165 DON/Melb 171 F344/Pit 171
FHH/Eur 171 GH/Omr 165 GK/KyoSwe 173
LE/Mol 169 LEW/Pit 171 LH/Mav 153
LN/Mav 171 LOU/CHan 171 MHS/Gib 171
MNR/N 171 MNRA/N 171 MNS/Gib 171
MR/Pit 171 NEDH/K 171 NP9 171
ODU/N 171 OKA/Wsl 169 OM/Ztm 171
P5C 171 PVG/Pit 171 SD/Rij 171
SHR/OlaHsd 169 SHRSP/Riv 169 SR/Jr 171
SS/Jr 171 WAG/RijKyo 171 WF/Pit 173
WIST/Nhg 171 WKY/OlaHsd 171 WN/N 171
WTC/Kyo 171


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1563805Dnah17dynein, axonemal, heavy chain 1710103244144103364953Rat
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat

1 to 10 of 54 rows


Database
Acc Id
Source(s)
NCBI Gene 287845 UniSTS