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WARFARIN DRUG PATHWAY (PW:0000722)
Description
Warfarin, trade name Coumadin, is a widely-used oral anticoagulant drug for the prevention of thrombosis and venous and arterial thromboembolism. It is a synthetic derivative of coumarin-derived dicoumarol. Warfarin is present as a racemic mixture of R and S enantiomers, both active, though not equally, and both metabolized via different routes. Warfarin is metabolized by several cytochrome P450 phase I biotransformation enzymes, depending on the enantiomeric form and producing a number of metabolites. Metabolism by phase II enzymes is less well understood although glucuronidation of most metabolites, carried out by several (UDP)-glucuronosyltransferases (UGTs) with various specificities, is reported. The target of warfarin is vitamin K epoxide reductase (VKORC1), the enzyme that reduces the oxidized vitamin K and therefore regenerates the reduced form of the vitamin and essential cofactor for the carboxylation reaction of glutamate (Glu) to gamma-carboxyglutamate (Gla). The posttranslational modification of proteins known as 'vitamin K-dependent proteins' (VKDs) is an important modification that allows for the reversible, calcium-dependent, binding to negatively charged phospholipids (phosphatidylserine or phosphatidic acid) of membranes. This is particularly important for coagulation/clotting factors and natural anticoagulants, classic examples and better-characterized systems of gamma-carboxylated VKD proteins. The reaction is carried out by gamma-glutamyl carboxylase (Ggcx) and in the reaction the reduced K hydroxyquinone (KH 2) is oxidized to vitamin K 2,3-epoxide (KO). KO is converted back to KH 2 by VKORC1. The shuttling between the oxidized and reduced forms is known as the vitamin K cycle metabolic pathway. By inhibiting the cycle, warfarin precludes the modification of VKD proteins and therefore affects their function. As many of the important enzymes of the coagulation cascade are VKDs, warfarin inhibits blood clotting and is antithrombotic. However, two of the key proteins in the important anticoagulation pathway of activated protein C and the anticoagulant protein Z, are also VKDs, and inhibition of clotting can experience some delay or there may even be pro-coagulation effects, particularly at the beginning of drug treatment. Bleeding and thromboembolic effects are observed and can be rather severe. Relative dose of the drug, inter-individual variability, diet can all contribute. Warfarin can interact with drugs and foods and overall, dosing of warfarin is challenging. Foods, such as green leafy vegetables in particular but others too, are high in vitamin K. Variants in the enzymes of warfarin or vitamin K metabolism can affect the dosing of the drug and impact on its response. Polymorphisms in CYP2C9, the main enzyme of S-warfarin, and in VKORC1, the warfarin target, account for a good proportion of inter-individual variability. Side effects include necrosis, particularly of the skin, osteoporosis and vascular calcification, warfarin-related nephropathy, some likely due to VKD proteins beyond coagulation such as osteocalcin, matrix Gla protein or Gas6. More novel anticoagulant drugs are directly targeting important components of the coagulation cascade such as the activated factor X (F10a) or thrombin (F2a). There are both advantages and disadvantages in the use of these drugs, compared to the vitamin K antagonist, warfarin. ...(less)
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Pathway Diagram:
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Genes in Pathway:
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Col1a1
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collagen type I alpha 1 chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460
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| G
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F10
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coagulation factor X
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr16:83,170,973...83,190,280
Ensembl chr16:83,170,977...83,190,280
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| G
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F11
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coagulation factor XI
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr16:53,720,502...53,741,547
Ensembl chr16:53,718,621...53,740,941
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| G
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F12
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coagulation factor XII
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr17:9,212,819...9,220,664
Ensembl chr17:9,212,819...9,220,664
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| G
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F13a1
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coagulation factor XIII A1 chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr17:28,021,197...28,197,960
Ensembl chr17:28,020,845...28,197,948
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| G
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F13b
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coagulation factor XIII B chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr13:53,681,639...53,707,114
Ensembl chr13:53,681,622...53,707,300
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| G
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F2
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coagulation factor II, thrombin
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 3:98,051,958...98,065,246
Ensembl chr 3:98,051,960...98,065,246
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| G
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F3
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coagulation factor III, tissue factor
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 2:212,511,675...212,523,375
Ensembl chr 2:212,511,680...212,523,369
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| G
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F5
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coagulation factor V
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr13:79,046,657...79,116,247
Ensembl chr13:79,046,448...79,116,247
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| G
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F7
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coagulation factor VII
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr16:83,191,896...83,202,775
Ensembl chr16:83,191,914...83,202,738
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| G
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F8
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coagulation factor VIII
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr18:155,237...187,186
Ensembl chr18:155,309...186,683
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| G
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F9
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coagulation factor IX
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr X:143,388,642...143,433,143
Ensembl chr X:143,388,621...143,433,146
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| G
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Fga
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fibrinogen alpha chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 2:170,672,169...170,679,572
Ensembl chr 2:170,672,012...170,679,577
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| G
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Fgb
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fibrinogen beta chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 2:170,693,966...170,700,875
Ensembl chr 2:170,692,965...170,705,434
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| G
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Fgg
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fibrinogen gamma chain
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 2:170,652,929...170,660,372
Ensembl chr 2:170,652,234...170,661,170
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| G
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Ggcx
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gamma-glutamyl carboxylase
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 4:106,027,918...106,043,653
Ensembl chr 4:106,027,912...106,043,923
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| G
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Klkb1
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kallikrein B1
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr16:53,690,180...53,714,570
Ensembl chr16:53,691,220...53,716,339
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| G
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Plat
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plasminogen activator, tissue type
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr16:75,943,061...76,022,037
Ensembl chr16:75,943,064...75,967,696
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| G
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Plg
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plasminogen
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ISO
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SMPDB |
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SMP:00268 |
NCBI chr 1:50,872,927...50,915,406
Ensembl chr 1:50,872,926...50,917,320
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| G
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Vkorc1
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vitamin K epoxide reductase complex, subunit 1
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ISO
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SMPDB RGD |
PMID:26287237 |
SMP:00268, RGD:11354881 |
NCBI chr 1:191,932,969...191,935,490
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Cyp1a1
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cytochrome P450, family 1, subfamily a, polypeptide 1
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:66,991,970...66,998,012
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| G
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Cyp1a2
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cytochrome P450, family 1, subfamily a, polypeptide 2
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
NCBI chr 8:66,971,261...66,978,149
Ensembl chr 8:66,971,261...66,978,149
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| G
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Cyp2c11
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cytochrome P450, subfamily 2, polypeptide 11
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
NCBI chr 1:246,175,216...246,211,445
Ensembl chr 1:246,174,711...246,211,853
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| G
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Cyp2c6
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cytochrome P450, family 2, subfamily C, polypeptide 6
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
NCBI chr 1:247,879,058...247,916,804
Ensembl chr 1:247,879,078...247,916,798
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| G
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Cyp2c79
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cytochrome P450, family 2, subfamily c, polypeptide 79
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
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| G
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Cyp3a2
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cytochrome P450, family 3, subfamily a, polypeptide 2
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ISO
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RGD |
PMID:26655108 |
RGD:11354883 |
NCBI chr12:14,321,771...14,343,886
Ensembl chr12:14,321,771...14,343,857
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| G
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Ugt1a1
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UDP glucuronosyltransferase family 1 member A1
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ISO
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RGD |
PMID:17921187 |
RGD:11354886 |
NCBI chr 9:96,249,143...96,256,264
Ensembl chr 9:96,144,786...96,256,264
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| G
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Ugt1a9
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UDP glucuronosyltransferase family 1 member A9
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ISO
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RGD |
PMID:17921187 |
RGD:11354886 |
NCBI chr 9:96,144,786...96,256,264
Ensembl chr 9:96,144,786...96,256,264
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Pathway Gene Annotations |
References Associated with the warfarin drug pathway:
- Lane S, etal., Br J Clin Pharmacol. 2012 Jan;73(1):66-76. doi: 10.1111/j.1365-2125.2011.04051.x.
- Baker WL and Johnson SG, Curr Opin Pharmacol. 2016 Apr;27:38-42. doi: 10.1016/j.coph.2016.01.008. Epub 2016 Feb 15.
- Czogalla KJ, etal., Nutrients. 2015 Aug 14;7(8):6837-51. doi: 10.3390/nu7085313.
- Kamali F and Wynne H, Annu Rev Med. 2010;61:63-75. doi: 10.1146/annurev.med.070808.170037.
- Shaik AN, etal., J Chromatogr B Analyt Technol Biomed Life Sci. 2016 Jan 1;1008:164-73. doi: 10.1016/j.jchromb.2015.11.036. Epub 2015 Nov 23.
- Porter WR J Comput Aided Mol Des. 2010 Jun;24(6-7):553-73. doi: 10.1007/s10822-010-9335-7. Epub 2010 Mar 30.
- Pugh CP, etal., Arch Biochem Biophys. 2014 Dec 15;564:244-53. doi: 10.1016/j.abb.2014.10.006. Epub 2014 Oct 19.
- Zielinska A, etal., J Pharmacol Exp Ther. 2008 Jan;324(1):139-48. Epub 2007 Oct 5.
- Mookadam M, etal., J Am Board Fam Med. 2015 Jul-Aug;28(4):510-22. doi: 10.3122/jabfm.2015.04.140297.
- Harter K, etal., West J Emerg Med. 2015 Jan;16(1):11-7. doi: 10.5811/westjem.2014.12.22933. Epub 2015 Jan 12.
- Mekaj YH, etal., Ther Clin Risk Manag. 2015 Jun 24;11:967-77. doi: 10.2147/TCRM.S84210. eCollection 2015.
- Tufano A, etal., Semin Thromb Hemost. 2015 Jun;41(4):382-8. doi: 10.1055/s-0034-1543999. Epub 2015 Feb 19.
- da Silva IR and Provencio JJ, J Intensive Care Med. 2015 Feb;30(2):63-78. doi: 10.1177/0885066613488732. Epub 2013 May 20.
- Ejzenberg D, etal., Einstein (Sao Paulo). 2015 Jul-Sep;13(3):417-9. doi: 10.1590/S1679-45082015RC2829. Epub 2015 May 19.
- Yang Y, etal., Int J Cardiol. 2014 Oct 20;176(3):1297-8. doi: 10.1016/j.ijcard.2014.07.166. Epub 2014 Aug 11.
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Ontology Path Diagram:
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Import into Pathway Studio:
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