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ethanol - Ontology Report - Rat Genome Database

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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:ethanol
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Accession:XCO:0000325 term browser browse the term
Definition:Any condition in which the main influencing factor is ethanol, a primary alcohol with chemical formula CH3-CH2-OH, that is ethane in which one of the hydrogens is substituted by a hydroxy group.
Synonyms:exact_synonym: ethyl alcohol
 related_synonym: EtOH
 xref: CHEBI:16236

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ethanol term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alcrsp1 Alcohol response QTL 1 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 1:100,979,852...145,979,852 JBrowse link
Q Alcrsp15 Alcohol response QTL 16 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439
Q Alcrsp16 Alcohol response QTL 16 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439
Q Alcrsp17 Alcohol response QTL 17 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 2:149,559,561...249,053,267 JBrowse link
Q Alcrsp18 Alcohol response QTL 18 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 5:35,189,153...141,643,988 JBrowse link
Q Alcrsp19 Alcohol response QTL 19 IDA 0.001 12.4 RGD PMID:19500156 RGD:2317807 NCBI chr 1:100,979,852...145,979,852 JBrowse link
Q Alcrsp2 Alcohol response QTL 2 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 2:149,559,561...221,167,075 JBrowse link
Q Alcrsp20 Alcohol response QTL 20 IDA 0.63 2.4000000953674316 RGD PMID:19500156 RGD:2317807
Q Alcrsp21 Alcohol response QTL 21 IDA 0.05 1.899999976158142 RGD PMID:19500156 RGD:2317807 NCBI chr19:3,204,777...48,204,777 JBrowse link
Q Alcrsp22 Alcohol response QTL 22 IDA 0.05 3.2 RGD PMID:19500156 RGD:2317807 NCBI chr20:1...27,339,237 JBrowse link
Q Alcrsp23 Alcohol response QTL 23 IDA 0.63 2.4 RGD PMID:19500156 RGD:2317807
Q Alcrsp24 Alcohol response QTL 24 IDA 0.05 3.2 RGD PMID:19500156 RGD:2317807 NCBI chr 8:1...25,902,202 JBrowse link
Q Alcrsp25 Alcohol response QTL 25 IDA 2.3 RGD PMID:19500156 RGD:2317807 NCBI chr20:17,697,550...54,435,887 JBrowse link
Q Alcrsp26 Alcohol response QTL 26 IDA 0.63 1.8 RGD PMID:19500156 RGD:2317807 NCBI chr 3:145,526,770...169,034,231 JBrowse link
Q Alcrsp27 Alcohol response QTL 27 IDA 0.63 3.3 RGD PMID:19500156 RGD:2317807 NCBI chr14:56,631,369...101,631,369 JBrowse link
Q Alcrsp28 Alcohol response QTL 28 IDA 0.63 2.1 RGD PMID:19500156 RGD:2317807 NCBI chr 2:212,828,222...249,053,267 JBrowse link
Q Alcrsp3 Alcohol response QTL 3 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 5:12,689,285...57,689,285 JBrowse link
Q Alcrsp4 Alcohol response QTL 4 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 6:67,262,953...112,262,953 JBrowse link
Q Alcrsp5 Alcohol response QTL 5 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr12:12,812,385...46,669,029 JBrowse link
Q Alcrsp6 Alcohol response QTL 6 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr13:52,362,171...97,362,171 JBrowse link
Q Alcrsp7 Alcohol response QTL 7 IDA 3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr20:1...27,339,237 JBrowse link
Q Alcrsp8 Alcohol response QTL 8 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 5:35,189,153...68,564,008 JBrowse link
controlled ethanol content drinking water term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alc10 Alcohol consumption QTL 10 IDA 2.2 RGD PMID:14634485 RGD:731212 NCBI chr12:19,610,870...40,218,516 JBrowse link
Q Alc11 Alcohol consumption QTL 11 IDA 3.2 RGD PMID:14634485 RGD:731212 NCBI chr16:4,227,609...60,252,231 JBrowse link
Q Alc12 Alcohol consumption QTL 12 IDA 4.5 RGD PMID:14634485 RGD:731212 NCBI chr10:17,245,513...19,388,279 JBrowse link
Q Alc13 Alcohol consumption QTL 13 IDA 4.5 RGD PMID:14634485 RGD:731212 NCBI chr16:4,227,609...16,039,848 JBrowse link
Q Alc14 Alcohol consumption QTL 14 IDA 3.0E-5 7.6 RGD PMID:12972953 RGD:731213 NCBI chr 4:59,948,935...154,902,892 JBrowse link
Q Alc15 Alcohol consumption QTL 15 IDA 2.2E-4 4.1 RGD PMID:12972953 RGD:731213 NCBI chr 2:184,165,752...229,165,752 JBrowse link
Q Alc16 Alcohol consumption QTL 16 IDA 1.5E-4 3.6 RGD PMID:12972953 RGD:731213 NCBI chr 4:59,948,935...154,902,892 JBrowse link
Q Alc17 Alcohol consumption QTL 17 IDA 0.003 3.1 RGD PMID:12972953 RGD:731213 NCBI chr 6:1...27,574,569 JBrowse link
Q Alc23 Alcohol consumption QTL 23 IDA 0.00509 RGD PMID:21516450 RGD:6218999
Q Alc4 Alcohol consumption QTL 4 IDA 3.5 RGD PMID:10979603 RGD:631230 NCBI chr 5:8,187,501...18,616,199 JBrowse link
Q Alc5 Alcohol consumption QTL 5 IDA 2.4 RGD PMID:10979603 RGD:631230 NCBI chr10:5,144,027...17,245,662 JBrowse link
Q Alc6 Alcohol consumption QTL 6 IDA 4.7 RGD PMID:10979603 RGD:631230 NCBI chr12:28,607,526...37,691,617 JBrowse link
Q Alc7 Alcohol consumption QTL 7 IDA 2.9 RGD PMID:12960747 RGD:724636 NCBI chr16:1...26,727,669 JBrowse link
Q Alc8 Alcohol consumption QTL 8 IDA 2.7 RGD PMID:11958543 RGD:631229 NCBI chr 3:1...33,230,976 JBrowse link
Q Alc9 Alcohol consumption QTL 9 IDA 2.2 RGD PMID:14634485 RGD:731212 NCBI chr10:5,144,027...19,233,348 JBrowse link
controlled ethanol content drinking water with water as an optional drink source term browser
Symbol Object Name Evidence rsID P Value LOD Score Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alc18 Alcohol consumption QTL 18 IDA 9.2 10% ethanol in water RGD PMID:9880658 RGD:69704 NCBI chr 4:56,647,873...149,491,524 JBrowse link
Q Alc19 Alcohol consumption QTL 19 IDA 2.5 10% ethanol in water RGD PMID:9880658 RGD:69704 NCBI chr 3:1...27,494,778 JBrowse link
Q Alc20 Alcohol consumption QTL 20 IDA 2.0 10% ethanol in water RGD PMID:9880658 RGD:69704 NCBI chr 8:30,848,154...40,713,225 JBrowse link
Q Alc21 Alcohol consumption QTL 21 IDA 1.0E-4 8.6 10% ethanol in water RGD PMID:9660316 RGD:61483 NCBI chr 4:56,698,790...126,192,555 JBrowse link
Q Alc22 Alcohol consumption QTL 22 IDA 5.0E-4 RGD PMID:16470346 RGD:1578304 NCBI chr 4:81,192,555...126,192,555 JBrowse link
Q Alc24 Alcohol consumption QTL 24 IDA 0.74 2.3 RGD PMID:24961585 RGD:8663441 NCBI chr 1:150,452,391...168,228,760 JBrowse link
Q Alc25 Alcohol consumption QTL 25 IDA 0.28 3.0 RGD PMID:24961585 RGD:8663441 NCBI chr 1:207,987,464...228,627,600 JBrowse link
Q Alc26 Alcohol consumption QTL 26 IDA 0.667 2.4 RGD PMID:24961585 RGD:8663441 NCBI chr 2:221,136,523...241,305,619 JBrowse link
Q Alc27 Alcohol consumption QTL 27 IDA 0.791 2.2 RGD PMID:24961585 RGD:8663441 NCBI chr 6:34,323,357...51,121,479 JBrowse link
Q Alc28 Alcohol consumption QTL 28 IDA 0.439 2.7 RGD PMID:24961585 RGD:8663441 NCBI chr12:23,081,340...44,726,024 JBrowse link
Q Alc29 Alcohol consumption QTL 29 IDA 0.258 2.7 RGD PMID:24961585 RGD:8663441 NCBI chr 1:207,987,464...234,238,494 JBrowse link
Q Alc30 Alcohol consumption QTL 30 IDA 0.739 2.0 RGD PMID:24961585 RGD:8663441 NCBI chr 3:10,434,306...24,512,004 JBrowse link
Q Alc31 Alcohol consumption QTL 31 IDA 0.038 3.7 RGD PMID:24961585 RGD:8663441 NCBI chr 6:17,532,521...24,011,952 JBrowse link
Q Alc32 Alcohol consumption QTL 32 IDA 0.755 2.0 RGD PMID:24961585 RGD:8663441 NCBI chr 8:88,612,425...107,550,209 JBrowse link
Q Alc33 Alcohol consumption QTL 33 IDA 0.68 2.1 RGD PMID:24961585 RGD:8663441 NCBI chr12:23,081,340...43,551,788 JBrowse link
Q Alc34 Alcohol consumption QTL 34 IDA 0.611 2.2 RGD PMID:24961585 RGD:8663441 NCBI chr 1:207,987,464...228,627,600 JBrowse link
Q Alc35 Alcohol consumption QTL 35 IDA 0.606 2.2 RGD PMID:24961585 RGD:8663441 NCBI chr 6:7,964,167...21,301,982 JBrowse link
Q Alc36 Alcohol consumption QTL 36 IDA 0.592 2.0 RGD PMID:24961585 RGD:8663441 NCBI chr 2:217,139,753...236,660,713 JBrowse link
Q Alc37 Alcohol consumption QTL 37 IDA 0.224 2.6 RGD PMID:24961585 RGD:8663441 NCBI chr 6:7,964,167...21,301,982 JBrowse link

Related Phenotype Data for Term "ethanol" (XCO:0000325)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
Term paths to the root
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Term Annotations click to browse term
  experimental condition 2376
    chemical 1266
      chemical with specified structure 1131
        alcohol 56
          primary alcohol 56
            ethanol 56
              Lieber-DeCarli ethanol liquid diet 0
              controlled ethanol content deionized water used as vehicle 0
              controlled ethanol content drinking water + 34
              controlled ethanol content saline 0
paths to the root