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spectrometry - Ontology Report - Rat Genome Database

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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (https://rgd.mcw.edu/rgdweb/contact/contactus.html).
Term:spectrometry
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Accession:MMO:0000172 term browser browse the term
Definition:A method in which an emission (as of particles or radiation) is dispersed according to some property (as mass or energy) of the emission and the amount of dispersion is measured.

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atomic absorption spectrometry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IDA RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IDA RGD PMID:11741328 RGD:619607 NCBI chr16:1...39,533,949 JBrowse link
bromocresol green-based urine albumin analysis with spectrophotometric readout term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf3 Renal disease susceptibility QTL 3 IDA RGD PMID:11053483 RGD:70856 NCBI chr 3:107,693,393...152,693,393 JBrowse link
colorimetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Stl32 Serum triglyceride level QTL 32 IDA RGD PMID:20159938 RGD:7365117 NCBI chr 2:22,384,627...67,384,627 JBrowse link
Q Sual1 Serum uric acid level QTL 1 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 3:96,127,817...102,200,699 JBrowse link
flame atomic absorption spectrometry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc3 Hepatic copper content QTL 3 IDA RGD PMID:12094018 RGD:629572 NCBI chr 2:229,059,610...249,053,267 JBrowse link
Q Hcuc4 Hepatic copper content QTL 4 IDA RGD PMID:12094018 RGD:629572 NCBI chr10:66,941,813...73,452,992 JBrowse link
fluorometry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf59 Renal function QTL 59 IDA RGD PMID:21127141 RGD:5684423 NCBI chr 3:140,069,424...146,976,080 JBrowse link
Fura-2 intracellular calcium assay term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Calcic1 Intracellular calcium level QTL 1 IDA RGD PMID:15882549 RGD:1547855 NCBI chr12:28,064,433...40,130,419 JBrowse link
Q Calcic2 Intracellular calcium level QTL 2 IDA RGD PMID:17261463 RGD:1599588 NCBI chr12:28,064,433...46,669,029 JBrowse link
liquid phase colorimetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gluco65 Glucose level QTL 65 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 9:1...37,999,212 JBrowse link
Q Gluco66 Glucose level QTL 66 IDA RGD PMID:25003539 RGD:8694157 NCBI chr13:15,158,722...60,158,722 JBrowse link
Q Gluco67 Glucose level QTL 67 IDA RGD PMID:25003539 RGD:8694157
Q Gluco68 Glucose level QTL 68 IDA RGD PMID:25003539 RGD:8694157 NCBI chr18:29,792,965...74,792,965 JBrowse link
Q Insul19 Insulin level QTL 19 IDA RGD PMID:22947656 RGD:6893578 NCBI chr 1:203,300,512...213,659,238 JBrowse link
Q Rf51 Renal function QTL 51 IDA RGD PMID:10545438 RGD:619628 NCBI chr 1:218,753,816...256,448,513 JBrowse link
Q Scl45 Serum cholesterol level QTL 45 IDA RGD PMID:16061941 RGD:1547851 NCBI chr14:50,023,211...95,023,211 JBrowse link
Q Scl59 Serum cholesterol level QTL 59 IDA RGD PMID:18753676 RGD:2300117 NCBI chr14:55,147,478...100,147,478 JBrowse link
Q Sffal1 Serum free fatty acids level QTL 1 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 7:116,677,010...124,049,952 JBrowse link
Q Sffal2 Serum free fatty acids level QTL 2 IDA RGD PMID:15728334 RGD:1580752 NCBI chr14:92,553,886...95,876,975 JBrowse link
Q Sffal3 Serum free fatty acids level QTL 3 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 2:27,157,160...72,157,160 JBrowse link
Q Sffal4 Serum free fatty acids level QTL 4 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 4:1...31,934,116 JBrowse link
Q Sffal5 Serum free fatty acids level QTL 5 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 7:5,329,019...50,329,019 JBrowse link
Q Sffal6 Serum free fatty acids level QTL 6 IDA RGD PMID:25003539 RGD:8694157
Q Sffal7 Serum free fatty acids level QTL 7 IDA RGD PMID:25003539 RGD:8694157 NCBI chr17:28,409,147...73,409,147 JBrowse link
Q Sffal8 Serum free fatty acids level QTL 8 IDA RGD PMID:25003539 RGD:8694157 NCBI chr20:1...29,191,651 JBrowse link
Q Stl10 Serum triglyceride level QTL 10 IDA RGD PMID:14724732 RGD:737686 NCBI chr 4:21,333,343...44,463,908 JBrowse link
Q Stl11 Serum triglyceride level QTL 11 IDA RGD PMID:14724732 RGD:737686 NCBI chr 7:119,513,385...135,012,528 JBrowse link
Q Stl12 Serum triglyceride level QTL 12 IDA RGD PMID:14724732 RGD:737686 NCBI chr11:66,422,148...86,241,447 JBrowse link
Q Stl20 Serum triglyceride level QTL 20 IDA RGD PMID:15728334 RGD:1580752 NCBI chr 8:48,630,131...49,147,989 JBrowse link
Q Stl21 Serum triglyceride level QTL 21 IDA RGD PMID:15728334 RGD:1580752 NCBI chr15:28,030,665...82,262,678 JBrowse link
Q Uminl1 Urine mineral level QTL 1 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 3:28,249,687...73,249,687 JBrowse link
Q Uminl2 Urine mineral level QTL 2 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 6:38,783,989...83,783,989 JBrowse link
Q Uminl3 Urine mineral level QTL 3 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 8:71,888,757...116,888,757 JBrowse link
Q Uminl4 Urine mineral level QTL 4 IDA RGD PMID:25003539 RGD:8694157 NCBI chr14:55,624,247...100,624,247 JBrowse link
Q Uminl5 Urine mineral level QTL 5 IDA RGD PMID:25003539 RGD:8694157 NCBI chr19:1...36,824,771 JBrowse link
Lowry protein assay term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Aocep1 Aortic cell protein QTL 1 IDA RGD PMID:15668357 RGD:1334448 NCBI chr17:40,990,005...85,990,005 JBrowse link
manually read urine glucose test strip term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Iddm15 Insulin dependent diabetes mellitus QTL 15 IDA RGD PMID:11327715 RGD:619685 NCBI chr18:60,622,311...77,209,844 JBrowse link
Q Iddm18 Insulin dependent diabetes mellitus QTL 18 IDA RGD PMID:11327715 RGD:619685 NCBI chr 6:116,506,292...130,245,370 JBrowse link
peptide/protein analysis by liquid phase colorimetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Rf2 Renal disease susceptibility QTL 2 IDA RGD PMID:8528250 RGD:61060 NCBI chr 1:99,267,916...144,267,916 JBrowse link
protein analysis by liquid phase colorimetry with spectrophotometric readout term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pur1 Proteinuria QTL 1 IDA RGD PMID:9799838 RGD:619599 NCBI chr13:34,535,218...37,415,726 JBrowse link
Q Pur12 Proteinuria QTL 12 IDA RGD PMID:16390874 RGD:1578625 NCBI chr 2:112,103,657...148,076,632 JBrowse link
Q Pur13 Proteinuria QTL 13 IDA RGD PMID:16390874 RGD:1578625 NCBI chr 3:78,196,190...146,592,722 JBrowse link
Q Pur14 Proteinuria QTL 14 IDA RGD PMID:16390874 RGD:1578625 NCBI chr17:7,979,968...16,317,111 JBrowse link
Q Pur15 Proteinuria QTL 15 IDA RGD PMID:16390874 RGD:1578625 NCBI chr20:8,042,410...17,617,956 JBrowse link
Q Pur16 Proteinuria QTL 16 IDA RGD PMID:18064521 RGD:2292230 NCBI chr13:36,155,723...41,961,389 JBrowse link
Q Pur3 Proteinuria QTL 3 IDA RGD PMID:14638907 RGD:730279 NCBI chr15:1...41,686,771 JBrowse link
spectrophotometry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alcrsp10 Alcohol response QTL 10 IDA RGD PMID:15608595 RGD:1334439 NCBI chr11:8,436,674...53,436,674 JBrowse link
Q Alcrsp11 Alcohol response QTL 11 IDA RGD PMID:15608595 RGD:1334439 NCBI chr14:70,053,989...104,886,043 JBrowse link
Q Alcrsp15 Alcohol response QTL 16 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439
Q Alcrsp16 Alcohol response QTL 16 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439
Q Alcrsp8 Alcohol response QTL 8 IDA (3.5 g/kg, intraperitoneally RGD PMID:15608595 RGD:1334439 NCBI chr 5:35,189,153...68,564,008 JBrowse link
Q Alcrsp9 Alcohol response QTL 9 IDA RGD PMID:15608595 RGD:1334439 NCBI chr 7:24,099,606...69,099,606 JBrowse link
Q Hc6 Hypercalciuria QTL 6 IDA RGD PMID:16611718 RGD:1582396 NCBI chr 1:203,995,416...244,113,296 JBrowse link
Q Pur21 Proteinuria QTL 21 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 5:59,793,528...113,558,156 JBrowse link
Q Pur22 Proteinuria QTL 22 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 7:68,938,720...113,886,318 JBrowse link

Related Phenotype Data for Term "spectrometry" (MMO:0000172)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
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Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      spectrometry 56
        atomic spectrometry + 4
        mass spectrometry + 0
        photometry + 40
        spectrophotometry + 21
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