ONTOLOGY REPORT - ANNOTATIONS |
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Term: | cellular pigmentation |
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Accession: | GO:0033059
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browse the term
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Definition: | The deposition or aggregation of coloring matter in a cell. |
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Pomc |
proopiomelanocortin |
involved_in |
ISO IEA |
(PMID:9620771) GO_REF:0000107 |
RGD Ensembl |
PMID:9620771 |
GO_REF:0000107 |
NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664
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Ankrd27 |
ankyrin repeat domain 27 |
involved_in |
ISO |
(MGI:5607516|PMID:21187829) |
RGD |
PMID:21187829 |
MGI:5607516 |
NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
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Ap1g1 |
adaptor related protein complex 1 subunit gamma 1 |
involved_in |
ISO |
(PMID:22511774) |
RGD |
PMID:22511774 |
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NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167
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Ap1m1 |
adaptor related protein complex 1 subunit mu 1 |
involved_in |
ISO IEA |
(PMID:19841138) GO_REF:0000107 |
RGD Ensembl |
PMID:19841138 |
GO_REF:0000107 |
NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
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Ap3d1 |
adaptor related protein complex 3 subunit delta 1 |
involved_in |
ISO |
(PMID:22511774) |
RGD |
PMID:22511774 |
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NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
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Bloc1s3 |
biogenesis of lysosomal organelles complex-1, subunit 3 |
involved_in |
ISO |
(PMID:17182842) |
RGD |
PMID:17182842 |
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NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
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Bloc1s5 |
biogenesis of lysosomal organelles complex 1 subunit 5 |
involved_in |
ISO |
(PMID:17182842) |
RGD |
PMID:17182842 |
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NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
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Bloc1s6 |
biogenesis of lysosomal organelles complex 1 subunit 6 |
involved_in |
ISS ISO |
GO_REF:0000024 (PMID:17182842) |
UniProt RGD |
PMID:17182842 |
GO_REF:0000024 |
NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
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Cd63 |
Cd63 molecule |
involved_in |
ISO IEA ISS |
(PMID:21962903) GO_REF:0000107 GO_REF:0000024 |
RGD Ensembl UniProt |
PMID:21962903 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
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Rab32 |
RAB32, member RAS oncogene family |
involved_in |
ISO |
(PMID:22511774) |
RGD |
PMID:22511774 |
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NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
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Rab38 |
RAB38, member RAS oncogene family |
involved_in |
ISO |
(PMID:22511774) |
RGD |
PMID:22511774 |
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NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
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Rab17 |
RAB17, member RAS oncogene family |
involved_in |
ISO |
(MGI:5487521|PMID:21291502) |
RGD |
PMID:21291502 |
MGI:5487521 |
NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
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Abcb6 |
ATP binding cassette subfamily B member 6 |
involved_in |
ISO ISS |
(PMID:29940187) GO_REF:0000024 |
RGD UniProt |
PMID:29940187 |
GO_REF:0000024 |
NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
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Hps1 |
HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 |
involved_in |
ISO IBA |
(PMID:23084991) GO_REF:0000033 |
RGD GO_Central |
PMID:23084991 |
GO_REF:0000033 |
NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
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Hps4 |
HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 |
involved_in |
ISO IBA |
(PMID:23084991) GO_REF:0000033 |
RGD GO_Central |
PMID:23084991 |
GO_REF:0000033 |
NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
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Rab32 |
RAB32, member RAS oncogene family |
involved_in |
ISO |
(PMID:22511774), (PMID:23084991) |
RGD |
PMID:22511774 PMID:23084991 |
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NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
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Rab38 |
RAB38, member RAS oncogene family |
involved_in |
ISO |
(PMID:22511774), (PMID:23084991) |
RGD |
PMID:22511774 PMID:23084991 |
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NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
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Gpr143 |
G protein-coupled receptor 143 |
involved_in |
ISO |
(PMID:19717472) |
RGD |
PMID:19717472 |
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NCBI chr X:22,002,914...22,027,720
Ensembl chr X:22,002,914...22,027,715
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Mlph |
melanophilin |
acts_upstream_of_or_within |
ISO |
MGI:1856674 (PMID:11886590), (PMID:11887186), (PMID:14730011) |
RGD |
PMID:11886590 PMID:11887186 PMID:14730011 |
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NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
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Mreg |
melanoregulin |
involved_in |
ISO |
(MGI:5447858|PMID:22940130) |
RGD |
PMID:22940130 |
MGI:5447858 |
NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
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Myo5a |
myosin VA |
acts_upstream_of_or_within |
ISO |
MGI:1856004 (PMID:11266470), (PMID:14730011), (PMID:8962090) |
RGD |
PMID:8962090 PMID:11266470 PMID:14730011 |
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NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
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Rab27a |
RAB27A, member RAS oncogene family |
involved_in |
ISO |
(PMID:15357836) |
RGD |
PMID:15357836 |
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NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
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Vps33a |
VPS33A core subunit of CORVET and HOPS complexes |
involved_in |
ISO IEA |
(PMID:15790593) GO_REF:0000107 |
RGD Ensembl |
PMID:15790593 |
GO_REF:0000107 |
NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
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Vps33b |
VPS33B, late endosome and lysosome associated |
involved_in |
ISO |
(PMID:15790593) |
RGD |
PMID:15790593 |
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NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
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Ap1m1 |
adaptor related protein complex 1 subunit mu 1 |
involved_in |
ISO IEA |
(PMID:19841138) GO_REF:0000107 |
RGD Ensembl |
PMID:19841138 |
GO_REF:0000107 |
NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
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Ap3b1 |
adaptor related protein complex 3 subunit beta 1 |
involved_in acts_upstream_of_or_within |
ISO |
(PMID:11452004), (PMID:19841138) (PMID:9931340) |
RGD |
PMID:9931340 PMID:11452004 PMID:19841138 |
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NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
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Apoe |
apolipoprotein E |
involved_in |
ISO IEA ISS |
(PMID:26387950) GO_REF:0000107 GO_REF:0000024 (MGI:6830356|PMID:26387950) |
RGD Ensembl UniProt |
PMID:26387950 |
GO_REF:0000024 GO_REF:0000107 MGI:6830356 |
NCBI chr 1:79,353,924...79,357,852
Ensembl chr 1:79,353,916...79,357,932
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Asip |
agouti signaling protein |
involved_in acts_upstream_of_or_within |
IEA IBA ISO |
GO_REF:0000107 GO_REF:0000033 MGI:1855937 (PMID:9548375) |
Ensembl GO_Central RGD |
PMID:9548375 |
GO_REF:0000033 GO_REF:0000107 |
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Bace2 |
beta-secretase 2 |
involved_in |
ISO |
(PMID:23754390) (MGI:5495053|PMID:23754390) |
RGD |
PMID:23754390 |
MGI:5495053 |
NCBI chr11:36,707,447...36,789,550
Ensembl chr11:36,707,458...36,789,546
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Bloc1s3 |
biogenesis of lysosomal organelles complex-1, subunit 3 |
acts_upstream_of_or_within |
ISO |
MGI:1857021 (PMID:15265785) |
RGD |
PMID:15265785 |
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NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
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Bloc1s4 |
biogenesis of lysosomal organelles complex 1 subunit 4 |
acts_upstream_of_or_within |
ISO |
MGI:2449643 (PMID:11110696) |
RGD |
PMID:11110696 |
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NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531
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Gpr143 |
G protein-coupled receptor 143 |
involved_in |
ISO IBA |
(PMID:19717472) GO_REF:0000033 |
RGD GO_Central |
PMID:19717472 |
GO_REF:0000033 |
NCBI chr X:22,002,914...22,027,720
Ensembl chr X:22,002,914...22,027,715
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Kif13a |
kinesin family member 13A |
involved_in |
ISO |
(PMID:19841138) |
RGD |
PMID:19841138 |
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NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
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Lyst |
lysosomal trafficking regulator |
acts_upstream_of_or_within |
ISO |
MGI:1855968|MGI:3620573 (PMID:16518687), (PMID:4634048) |
RGD |
PMID:4634048 PMID:16518687 |
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NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
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Pikfyve |
phosphoinositide kinase, FYVE-type zinc finger containing |
involved_in |
ISO IBA |
(PMID:29584722) GO_REF:0000033 (MGI:6152906|PMID:29584722) |
RGD GO_Central |
PMID:29584722 |
GO_REF:0000033 MGI:6152906 |
NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
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Pmel |
premelanosome protein |
involved_in |
ISO IBA |
(PMID:11694580) GO_REF:0000033 |
RGD GO_Central |
PMID:11694580 |
GO_REF:0000033 |
NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
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Rab29 |
RAB29, member RAS oncogene family |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417
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Rab38 |
RAB38, member RAS oncogene family |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
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Shroom2 |
shroom family member 2 |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:3710716|PMID:16987870) |
UniProt RGD |
PMID:16987870 |
GO_REF:0000024 MGI:3710716 |
NCBI chr X:21,812,469...21,983,724
Ensembl chr X:21,812,469...21,984,153
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Tyrp1 |
tyrosinase-related protein 1 |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 MGI:1855960 (PMID:9548375) |
GO_Central RGD |
PMID:9548375 |
GO_REF:0000033 |
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Asip |
agouti signaling protein |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:1855937 (PMID:9548375) |
Ensembl RGD |
PMID:9548375 |
GO_REF:0000107 |
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Bloc1s3 |
biogenesis of lysosomal organelles complex-1, subunit 3 |
involved_in |
ISO |
(PMID:17182842) |
RGD |
PMID:17182842 |
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NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
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Bloc1s5 |
biogenesis of lysosomal organelles complex 1 subunit 5 |
involved_in |
ISO |
(PMID:17182842) |
RGD |
PMID:17182842 |
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NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
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Bloc1s6 |
biogenesis of lysosomal organelles complex 1 subunit 6 |
involved_in |
ISO ISS |
(PMID:17182842) GO_REF:0000024 |
RGD UniProt |
PMID:17182842 |
GO_REF:0000024 |
NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
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Dctn1 |
dynactin subunit 1 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 (PMID:22275436) |
Ensembl RGD |
PMID:22275436 |
GO_REF:0000107 |
NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
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Dctn2 |
dynactin subunit 2 |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 (PMID:22275436) |
Ensembl RGD |
PMID:22275436 |
GO_REF:0000107 |
NCBI chr 7:63,092,061...63,107,560
Ensembl chr 7:63,092,057...63,108,543
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Gpr143 |
G protein-coupled receptor 143 |
involved_in |
ISO |
(PMID:19717472) |
RGD |
PMID:19717472 |
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NCBI chr X:22,002,914...22,027,720
Ensembl chr X:22,002,914...22,027,715
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Map2k1 |
mitogen activated protein kinase kinase 1 |
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IDA |
positive regulation of bidirectional melanosome transport along microtubules |
RGD |
PMID:15753041 |
RGD:2293208 |
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Mreg |
melanoregulin |
involved_in acts_upstream_of_or_within |
IBA ISO |
GO_REF:0000033 (PMID:22275436) |
GO_Central RGD |
PMID:22275436 |
GO_REF:0000033 |
NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
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Myo5a |
myosin VA |
acts_upstream_of_or_within |
ISO |
MGI:1856004|MGI:1858077 (PMID:11266473), (PMID:24721909), (PMID:9133672), (PMID:9548375) |
RGD |
PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 |
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NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
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Rab11a |
RAB11a, member RAS oncogene family |
involved_in |
ISS IBA IEA ISO |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 (MGI:5487521|PMID:21291502) |
UniProt GO_Central Ensembl RGD |
PMID:21291502 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:5487521 |
NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
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Rab11b |
RAB11B, member RAS oncogene family |
involved_in |
ISS ISO |
GO_REF:0000024 (MGI:5487521|PMID:21291502) |
UniProt RGD |
PMID:21291502 |
GO_REF:0000024 MGI:5487521 |
NCBI chr 7:14,521,448...14,534,589
Ensembl chr 7:14,521,368...14,534,593
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Rab17 |
RAB17, member RAS oncogene family |
involved_in |
ISO |
(MGI:5487521|PMID:21291502) |
RGD |
PMID:21291502 |
MGI:5487521 |
NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
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Rab1a |
RAB1A, member RAS oncogene family |
involved_in |
ISO |
(MGI:5526918|PMID:22854043) |
RGD |
PMID:22854043 |
MGI:5526918 |
NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
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Rab27a |
RAB27A, member RAS oncogene family |
acts_upstream_of_or_within |
ISO |
MGI:1856656 (PMID:11266473) |
RGD |
PMID:11266473 |
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NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
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Myo7a |
myosin VIIA |
acts_upstream_of_or_within |
ISO |
MGI:1856716|MGI:2155422 (PMID:14609561), (PMID:14978221), (PMID:15572405) |
RGD |
PMID:14609561 PMID:14978221 PMID:15572405 |
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NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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Rab27a |
RAB27A, member RAS oncogene family |
acts_upstream_of_or_within |
ISO |
MGI:1856656 (PMID:14978221), (PMID:15572405) |
RGD |
PMID:14978221 PMID:15572405 |
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NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
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Cd63 |
Cd63 molecule |
involved_in |
ISO ISS |
(PMID:21962903) GO_REF:0000024 |
RGD UniProt |
PMID:21962903 |
GO_REF:0000024 |
NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
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Bcl2 |
BCL2, apoptosis regulator |
involved_in acts_upstream_of_or_within |
IEA ISO |
GO_REF:0000107 MGI:2158305 (PMID:8758925) |
Ensembl RGD |
PMID:8758925 |
GO_REF:0000107 |
NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Lyst |
lysosomal trafficking regulator |
acts_upstream_of_or_within |
ISO |
MGI:1855968 (PMID:1278263) |
RGD |
PMID:1278263 |
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NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
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Myo7a |
myosin VIIA |
acts_upstream_of_or_within |
ISO |
MGI:1856716|MGI:2155422 (PMID:15572405), (PMID:9620764) |
RGD |
PMID:9620764 PMID:15572405 |
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NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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Rab27a |
RAB27A, member RAS oncogene family |
acts_upstream_of_or_within |
ISO |
MGI:1856656 (PMID:15572405) |
RGD |
PMID:15572405 |
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NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
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Cdh3 |
cadherin 3 |
involved_in |
ISO |
(PMID:23334344) |
RGD |
PMID:23334344 |
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NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
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Gpr143 |
G protein-coupled receptor 143 |
involved_in |
ISO |
(MGI:3813974|PMID:18697795) |
RGD |
PMID:18697795 |
MGI:3813974 |
NCBI chr X:22,002,914...22,027,720
Ensembl chr X:22,002,914...22,027,715
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Zeb2 |
zinc finger E-box binding homeobox 2 |
involved_in |
ISO |
(MGI:5574413|PMID:24769727) |
RGD |
PMID:24769727 |
MGI:5574413 |
NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157
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Gpr143 |
G protein-coupled receptor 143 |
involved_in |
ISO |
(MGI:3813974|PMID:18697795) |
RGD |
PMID:18697795 |
MGI:3813974 |
NCBI chr X:22,002,914...22,027,720
Ensembl chr X:22,002,914...22,027,715
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Term paths to the root
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