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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms


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pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028902.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr17:90,370,882...90,522,091 JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (MGI:1330543|PMID:9931340) RGD PMID:9931340 MGI:1330543 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Arcn1 archain 1 acts_upstream_of_or_within ISO MGI:2671790 (MGI:4454933|PMID:20502676) RGD PMID:20502676 MGI:4454933 NCBI chr 8:49,051,257...49,075,861
Ensembl chr 8:49,051,246...49,075,892
JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1856798 (MGI:61184|PMID:17247639) RGD PMID:17247639 MGI:61184 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856096|MGI:1856097|MGI:1856098|MGI:1856099|MGI:1856100|MGI:1856101|MGI:1856322|MGI:1856323|MGI:1856324|MGI:1856466|MGI:1856479|MGI:2447843|MGI:3588774 (MGI:3616522|PMID:16338116), (MGI:50550|PMID:1752214), (MGI:53773|PMID:4561716), (MGI:53908|PMID:4670054), (MGI:53940|PMID:4858102), (MGI:71790|PMID:2473662) RGD PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 PMID:16338116 MGI:3616522 MGI:50550 MGI:53773 MGI:53908 MGI:53940 MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:71790 MGI:72704 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Atrn attractin involved_in
acts_upstream_of_or_within
IMP
ISO
PMID:11209055
MGI:1856081|MGI:1856082 (MGI:3771742|PMID:18064672)
RGD PMID:18064672, PMID:11209055 MGI:3771742 MGI:48643, RGD:67998 NCBI chr 3:123,434,409...123,567,922
Ensembl chr 3:123,434,409...123,567,918
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (MGI:63353|PMID:8402909) RGD PMID:8402909 MGI:63353 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in
acts_upstream_of_or_within
ISO (PMID:16385460)
MGI:1857021 (MGI:3522060|PMID:15265785), (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 PMID:16385460 MGI:3522060 MGI:55273 MGI:56449 MGI:77039 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cd63 Cd63 molecule involved_in ISO (MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:5569478 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:8901575)
(MGI:4412464|PMID:11434569)
GO_REF:0000024
RGD
UniProt
PMID:8901575 PMID:11434569 GO_REF:0000024 MGI:4412464 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (MGI:50485|PMID:1537334) RGD PMID:1537334 MGI:50485 NCBI chr15:103,208,174...103,245,033
Ensembl chr15:103,208,258...103,244,494
JBrowse link
G Dock7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO MGI:1856946 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 5:117,595,194...117,780,844
Ensembl chr 5:117,596,136...117,780,777
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:3576789 (MGI:3576468|PMID:9140068) RGD PMID:9140068 MGI:3576468 NCBI chr 8:53,678,777...53,743,643
Ensembl chr 8:53,678,777...53,743,642
JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO MGI:1856197|MGI:1858152 (MGI:53773|PMID:4561716) RGD PMID:4561716 MGI:53773 MGI:65389 NCBI chr  X:69,730,123...70,222,693
Ensembl chr  X:69,730,242...70,220,329
JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO MGI:1856017 (MGI:54784|PMID:544312) RGD PMID:544312 MGI:54784 NCBI chr20:28,179,132...28,263,092
Ensembl chr20:28,179,140...28,263,037
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP
ISO
homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
MGI:1856148 (MGI:77000|PMID:2379821)
RGD PMID:2379821, PMID:8570650 MGI:77000, RGD:628515 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (MGI:1194987|PMID:9362463) RGD PMID:9362463 MGI:1194987 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within ISO MGI:3716838 (MGI:3715385|PMID:17572665), (MGI:5296993|PMID:22028665) RGD PMID:17572665 PMID:22028665 MGI:3715385 MGI:5296993 NCBI chr20:45,922,806...46,044,754
Ensembl chr20:45,922,806...46,044,738
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 acts_upstream_of_or_within ISO MGI:1856707 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 2:104,789,423...104,832,964
Ensembl chr 2:104,789,423...104,830,898
JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within ISO MGI:1856147 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 1:102,810,114...102,849,430
Ensembl chr 1:102,776,082...102,849,430
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 acts_upstream_of_or_within ISO MGI:1856147|MGI:1856544 (MGI:3522060|PMID:15265785), (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:15265785 PMID:17247639 MGI:3522060 MGI:61184 MGI:77000 NCBI chr 1:265,761,818...265,764,427
Ensembl chr 1:265,761,738...265,764,437
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in
acts_upstream_of_or_within
ISO (MGI:3040777|PMID:15067126)
MGI:97306 (MGI:1351242|PMID:10620616)
RGD PMID:10620616 PMID:15067126 MGI:1351242 MGI:3040777 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Krt76 keratin 76 acts_upstream_of_or_within ISO MGI:4363117 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 7:143,488,668...143,497,108
Ensembl chr 7:143,488,684...143,497,108
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within
involved_in
IMP
ISO
MGI:1855968|MGI:2660913 (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:73117|PMID:13943454), (MGI:77039|PMID:2513223)
(PMID:10648412)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:10648412 PMID:13943454, PMID:12638234 MGI:55273 MGI:56449 MGI:73117 MGI:77039, RGD:1302441 NCBI chr17:90,323,055...90,522,091 JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO MGI:1856029 (MGI:87265|PMID:9183385) RGD PMID:9183385 MGI:87265 NCBI chr19:56,215,420...56,219,987 JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI:1856888 RGD MGI:60250 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:12086670 MGI:2180980 MGI:77000 NCBI chr 4:130,172,484...130,425,496
Ensembl chr 4:130,172,727...130,425,532
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:17247639 MGI:61184 MGI:77000 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:3141922 PMID:7828830 MGI:68399 MGI:68866 MGI:77000 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (MGI:3712581|PMID:17523175) RGD PMID:17523175 MGI:3712581 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1856005|MGI:1856008|MGI:1856407|MGI:1856847|MGI:1858058|MGI:1858059|MGI:1858060|MGI:1858061|MGI:1858062|MGI:1858063|MGI:1858064|MGI:1858065|MGI:1858066|MGI:1860204|MGI:1891626|MGI:1891639|MGI:2658702|MGI:3583341|MGI:5641704 (MGI:1203759|PMID:9560408), (MGI:1203760|PMID:9560409), (MGI:55563|PMID:6305507), (MGI:5569175|PMID:24721909), (MGI:56220|PMID:6098826), (MGI:5779494|PMID:25340873), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:73393|PMID:7774591), (MGI:73808|PMID:3422417), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 PMID:7774591 PMID:7828830 PMID:9560408 PMID:9560409 PMID:13880466 PMID:17247639 PMID:24721909 PMID:25340873 MGI:1203759 MGI:1203760 MGI:55563 MGI:5569175 MGI:56220 MGI:5779494 MGI:60423 MGI:61184 MGI:61192 MGI:68399 MGI:68866 MGI:73393 MGI:73808 MGI:77000 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO MGI:4362924 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 5:113,902,115...113,939,083
Ensembl chr 5:113,906,803...113,939,127
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857444|MGI:96677 (MGI:1350817|PMID:10594763), (MGI:1351242|PMID:10620616), (MGI:1859711|PMID:10844550)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000024 GO_REF:0000107 MGI:1350817 MGI:1351242 MGI:1859711 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856114 (MGI:1202196|PMID:9548375), (MGI:61184|PMID:17247639), (MGI:73117|PMID:13943454), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 MGI:1202196 MGI:61184 MGI:73117 MGI:77000 NCBI chr 1:114,661,970...114,987,433
Ensembl chr 1:114,679,537...114,987,433
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rack1 receptor for activated C kinase 1 acts_upstream_of_or_within ISO MGI:5660834 (MGI:5648195|PMID:23212600) RGD PMID:23212600 MGI:5648195 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:3045113 (MGI:3574257|PMID:15703196) RGD PMID:15703196 MGI:3574257 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107)
(MGI:2446014|PMID:12444107)
RGD PMID:12444107 MGI:2446014 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO MGI:4432869 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr10:40,742,390...40,764,232
Ensembl chr10:40,742,400...40,764,185
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within ISO MGI:4353996 (MGI:3852572|PMID:19624305) RGD PMID:19624305 MGI:3852572 NCBI chr 5:137,192,120...137,238,384
Ensembl chr 5:137,190,875...137,238,354
JBrowse link
G Trappc6a trafficking protein particle complex subunit 6A acts_upstream_of_or_within ISO MGI:3688725 (MGI:3688835|PMID:16697553) RGD PMID:16697553 MGI:3688835 NCBI chr 1:80,417,514...80,424,429
Ensembl chr 1:80,417,310...80,424,445
JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
MGI:1855976|MGI:1855978 (MGI:1202196|PMID:9548375), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639)
PMID:21873635
RGD PMID:9548375 PMID:13880466 PMID:17247639, PMID:15760344, PMID:21873635 MGI:1202196 MGI:60423 MGI:61184, RGD:1599687, RGD:13792537 NCBI chr 1:151,012,598...151,106,802
Ensembl chr 1:151,012,598...151,106,802
JBrowse link
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960|MGI:1855962 (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:13880466 PMID:17247639 MGI:60423 MGI:61184 MGI:77000 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO MGI:4365105 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 2:204,575,592...204,625,835
Ensembl chr 2:204,575,466...204,625,743
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856687 (MGI:53893|PMID:4777306)
Ensembl
RGD
PMID:4777306 GO_REF:0000107 MGI:53893 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in ISO
IEA
(PMID:9620771)
GO_REF:0000107
RGD
Ensembl
PMID:9620771 GO_REF:0000107 NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (MGI:2154874|PMID:11709185), (MGI:2156164|PMID:8170972) RGD PMID:8170972 PMID:11709185 MGI:2154874 MGI:2156164 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:2154874|PMID:11709185) RGD PMID:11709185 MGI:2154874 NCBI chr 3:120,726,906...120,764,192
Ensembl chr 3:120,726,906...120,764,192
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3045416|PMID:15102850), (MGI:54946|PMID:7203014) RGD PMID:7203014 PMID:15102850 MGI:3045416 MGI:54946 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (MGI:2177902|PMID:11912185) RGD PMID:11912185 MGI:2177902 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (MGI:3041903|PMID:15060160) RGD PMID:15060160 MGI:3041903 NCBI chr15:103,208,174...103,245,033
Ensembl chr15:103,208,258...103,244,494
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO MGI:1856149 (MGI:3055244|PMID:15322542) RGD PMID:15322542 MGI:3055244 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151589 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:11,033,400...11,047,284
Ensembl chr 7:11,033,317...11,047,437
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151661 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1856161|MGI:1856164|MGI:1856266|MGI:2449782|MGI:2660628 (MGI:3055244|PMID:15322542), (MGI:3778519|PMID:18454205) RGD PMID:15322542 PMID:18454205 MGI:3055244 MGI:3778519 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (MGI:3513741|PMID:15550542) RGD PMID:15550542 MGI:3513741 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:3513741|PMID:15550542) RGD PMID:15550542 MGI:3513741 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856123 (MGI:2157189|PMID:11756244) RGD PMID:11756244 MGI:2157189 NCBI chr 1:114,661,970...114,987,433
Ensembl chr 1:114,679,537...114,987,433
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1856173 (MGI:3055244|PMID:15322542) RGD PMID:15322542 MGI:3055244 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Slc45a2 solute carrier family 45, member 2 acts_upstream_of_or_within ISO MGI:1856227|MGI:1856581|MGI:1857540 (MGI:2156131|PMID:11700328) RGD PMID:11700328 MGI:2156131 NCBI chr 2:60,966,671...60,999,398
Ensembl chr 2:60,966,789...60,999,398
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1861983 (MGI:1861752|PMID:10932191) RGD PMID:10932191 MGI:1861752 NCBI chr15:108,908,366...108,913,812
Ensembl chr15:108,908,607...108,912,737
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:5607516 NCBI chr 1:91,857,048...91,958,763
Ensembl chr 1:91,857,057...91,958,763
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:41,805,252...41,860,076 JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:19,288,354...19,303,818
Ensembl chr16:19,288,355...19,303,824
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cd63 Cd63 molecule involved_in ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:1857344 (MGI:3505659|PMID:15205258) RGD PMID:15205258 MGI:3505659 NCBI chr 1:47,914,757...47,921,587
Ensembl chr 1:47,914,759...47,921,587
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Shroom2 shroom family member 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:23,478,869...23,649,424
Ensembl chr  X:23,478,871...23,649,466
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:104554|MGI:2156165|MGI:2158305 (MGI:2154874|PMID:11709185), (MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
Ensembl
RGD
PMID:8758925 PMID:11709185 PMID:12086670 GO_REF:0000107 MGI:2154874 MGI:2180980 MGI:81816 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
IBA
(PMID:8901575)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8901575, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:72,128,996...72,133,692
Ensembl chr  X:72,128,994...72,133,692
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (MGI:85072|PMID:9012511) RGD PMID:9012511 MGI:85072 NCBI chr 3:172,856,730...172,879,276
Ensembl chr 3:172,856,733...172,880,450
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO
MGI:1856148 (MGI:77000|PMID:2379821), (MGI:85072|PMID:9012511) RGD PMID:2379821 PMID:9012511, PMID:11709437 MGI:77000 MGI:85072, RGD:628459 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS
IEA
(PMID:28964717)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:28964717 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (MGI:3796727|PMID:18397875) RGD PMID:18397875 MGI:3796727 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr12:50,285,239...50,315,893
Ensembl chr12:50,285,278...50,314,406
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856544 (MGI:77000|PMID:2379821)
RGD PMID:2379821, PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:265,761,818...265,764,427
Ensembl chr 1:265,761,738...265,764,437
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:3612335 NCBI chr14:35,072,131...35,149,638
Ensembl chr14:35,072,108...35,149,610
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,269,869...2,346,246 JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5049797|PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:12086670, PMID:21873635 MGI:2180980 MGI:77000, RGD:13792537 NCBI chr 4:130,172,484...130,425,496
Ensembl chr 4:130,172,727...130,425,532
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856847 (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:7828830, PMID:21873635 MGI:68866 MGI:77000, RGD:13792537 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856114 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 1:114,661,970...114,987,433
Ensembl chr 1:114,679,537...114,987,433
JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:27226631)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:167,906,030...167,940,688
Ensembl chr 1:167,906,061...167,911,961
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:52947 MGI:77000 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:117,335,212...117,354,480
Ensembl chr 3:117,335,212...117,354,480
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (MGI:3701016|PMID:16790476) RGD PMID:16790476 MGI:3701016 NCBI chr 7:120,393,238...120,403,523
Ensembl chr 7:120,393,254...120,403,523
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855962 (MGI:77000|PMID:2379821)
RGD PMID:2379821, PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:29940187)
GO_REF:0000024
RGD
UniProt
PMID:29940187 GO_REF:0000024 NCBI chr 9:82,373,950...82,382,228
Ensembl chr 9:82,373,946...82,382,272
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IBA
ISO
PMID:21873635
(PMID:23084991)
RGD PMID:23084991, PMID:21873635 RGD:13792537 NCBI chr 1:261,989,178...262,015,282
Ensembl chr 1:261,989,178...262,015,153
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
PMID:21873635
RGD PMID:23084991, PMID:21873635 RGD:13792537 NCBI chr12:50,285,239...50,315,893
Ensembl chr12:50,285,278...50,314,406
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
G Trappc6a trafficking protein particle complex subunit 6A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3688725 (MGI:3688835|PMID:16697553)
RGD PMID:16697553, PMID:21873635 MGI:3688835, RGD:13792537 NCBI chr 1:80,417,514...80,424,429
Ensembl chr 1:80,417,310...80,424,445
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2177987|PMID:11887186), (MGI:3028456|PMID:14730011), (MGI:3614727|PMID:11886590) RGD PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chr 9:98,072,965...98,108,429
Ensembl chr 9:98,073,038...98,108,433
JBrowse link
G Mreg melanoregulin involved_in ISO (MGI:5447858|PMID:22940130) RGD PMID:22940130 MGI:5447858 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:1930900|PMID:11266470), (MGI:3028456|PMID:14730011), (MGI:85369|PMID:8962090) RGD PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISO (PMID:15357836)
MGI:1856656 (MGI:1930900|PMID:11266470)
RGD PMID:11266470 PMID:15357836 MGI:1930900 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:19,288,354...19,303,818
Ensembl chr16:19,288,355...19,303,824
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11452004), (PMID:19841138)
(MGI:1330543|PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 MGI:1330543 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855937 (MGI:1202196|PMID:9548375)
RGD PMID:9548375, PMID:21873635 MGI:1202196, RGD:13792537 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3522060|PMID:15265785) RGD PMID:15265785 MGI:3522060 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (MGI:1354542|PMID:11110696) RGD PMID:11110696 MGI:1354542 NCBI chr14:79,013,808...79,015,108
Ensembl chr14:79,013,807...79,015,112
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in IBA
ISO
PMID:21873635
(PMID:19717472)
RGD PMID:19717472, PMID:21873635 RGD:13792537 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:18,151,582...18,335,027
Ensembl chr17:18,151,982...18,335,019
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (MGI:3618562|PMID:16518687), (MGI:53824|PMID:4634048) RGD PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chr17:90,323,055...90,522,091 JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:29584722)
(MGI:6152906|PMID:29584722)
RGD PMID:29584722 MGI:6152906 NCBI chr 9:71,911,744...72,005,816
Ensembl chr 9:71,915,421...72,005,838
JBrowse link
G Pmel premelanosome protein involved_in IBA
ISO
PMID:21873635
(PMID:11694580)
RGD PMID:11694580, PMID:21873635 RGD:13792537 NCBI chr 7:3,133,347...3,143,827
Ensembl chr 7:3,133,506...3,143,911
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:48,644,575...48,650,229
Ensembl chr13:48,644,604...48,650,220
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:4,638,663...4,653,220
Ensembl chr 1:4,637,491...4,653,210
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3710716|PMID:16987870)
UniProt
RGD
PMID:16987870 GO_REF:0000024 MGI:3710716 NCBI chr  X:23,478,869...23,649,424
Ensembl chr  X:23,478,871...23,649,466
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855960 (MGI:1202196|PMID:9548375)
RGD PMID:9548375, PMID:21873635 MGI:1202196, RGD:13792537 NCBI chr 5:98,387,291...98,406,083
Ensembl chr 5:98,387,291...98,406,083
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1855937 (MGI:1202196|PMID:9548375) RGD PMID:9548375 MGI:1202196 NCBI chr 3:150,492,010...150,579,870
Ensembl chr 3:150,574,473...150,579,870
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:80,414,766...80,417,385
Ensembl chr 1:80,415,686...80,416,273
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
G Dctn1 dynactin subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 4:114,876,770...114,896,567
Ensembl chr 4:114,876,770...114,896,573
JBrowse link
G Dctn2 dynactin subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 7:70,555,953...70,571,433
Ensembl chr 7:70,556,019...70,572,614
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5492030|PMID:22275436)
RGD PMID:22275436, PMID:21873635 MGI:5492030, RGD:13792537 NCBI chr 9:79,490,058...79,559,768
Ensembl chr 9:79,490,050...79,545,024
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1858077 (MGI:1202196|PMID:9548375), (MGI:3653524|PMID:11266473), (MGI:5569175|PMID:24721909), (MGI:87417|PMID:9133672) RGD PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chr 8:82,038,966...82,156,507
Ensembl chr 8:82,037,977...82,156,617
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5487521|PMID:21291502)
PMID:21873635
UniProt
RGD
PMID:21291502, PMID:21873635 GO_REF:0000024 MGI:5487521, RGD:13792537 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:5487521|PMID:21291502)
UniProt
RGD
PMID:21291502 GO_REF:0000024 MGI:5487521 NCBI chr 7:18,598,991...18,612,132
Ensembl chr 7:18,598,880...18,612,147
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:98,118,907...98,131,883
Ensembl chr 9:98,118,908...98,131,883
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) RGD PMID:22854043 MGI:5526918 NCBI chr14:104,475,082...104,500,176
Ensembl chr14:104,475,082...104,501,020
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856656 (MGI:3653524|PMID:11266473)
RGD PMID:11266473, PMID:21873635 MGI:3653524, RGD:13792537 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
G Rab27b RAB27B, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:68,486,006...68,644,595
Ensembl chr18:68,488,942...68,551,558
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807630|PMID:17464332) RGD PMID:17464332 MGI:3807630 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
IEA
(MGI:5569478|PMID:21962903)
GO_REF:0000107
RGD
Ensembl
PMID:21962903 GO_REF:0000107 MGI:5569478 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561) RGD PMID:14609561 PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) RGD PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:3,320,250...3,335,583
Ensembl chr 7:3,320,103...3,335,582
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (MGI:81816|PMID:8758925)
Ensembl
RGD
PMID:8758925 GO_REF:0000107 MGI:81816 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (MGI:54133|PMID:1278263) RGD PMID:1278263 MGI:54133 NCBI chr17:90,323,055...90,522,091 JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:1267003|PMID:9620764), (MGI:3512820|PMID:15572405) RGD PMID:9620764 PMID:15572405 MGI:1267003 MGI:3512820 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3512820|PMID:15572405) RGD PMID:15572405 MGI:3512820 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in IEA
ISO
GO_REF:0000107
(MGI:6492453|PMID:33208952)
(PMID:31117290)
(PMID:33208952)
Ensembl
RGD
PMID:31117290 PMID:33208952 GO_REF:0000107 MGI:6492453 NCBI chr 7:11,214,832...11,223,713
Ensembl chr 7:11,216,975...11,223,649
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99702 (MGI:894988|PMID:9241272)
Ensembl
RGD
PMID:9241272 GO_REF:0000107 MGI:894988 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (MGI:1352325|PMID:10674380), (MGI:894988|PMID:9241272) RGD PMID:9241272 PMID:10674380 MGI:1352325 MGI:894988 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 7:135,465,021...135,630,941
Ensembl chr 7:135,466,884...135,630,654
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:124,660,254...124,860,997
Ensembl chr 4:124,660,262...124,858,250
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158305 (MGI:3618415|PMID:16427619)
Ensembl
RGD
PMID:16427619 GO_REF:0000107 MGI:3618415 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr 7:42,269,784...42,351,054
Ensembl chr 7:42,269,784...42,351,054
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:38,668,957...38,719,801
Ensembl chr19:38,669,230...38,719,677
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:114,869,478...114,880,218
Ensembl chr 3:114,869,459...114,881,590
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (MGI:3778519|PMID:18454205), (MGI:60945|PMID:14138974) RGD PMID:14138974 PMID:18454205 MGI:3778519 MGI:60945 NCBI chr 7:135,465,021...135,630,941
Ensembl chr 7:135,466,884...135,630,654
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:124,660,254...124,860,997
Ensembl chr 4:124,660,262...124,858,250
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr 3:120,726,906...120,764,192
Ensembl chr 3:120,726,906...120,764,192
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (MGI:60945|PMID:14138974) RGD PMID:14138974 MGI:60945 NCBI chr 3:172,856,730...172,879,276
Ensembl chr 3:172,856,733...172,880,450
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856687 (MGI:2450053|PMID:12538872)
Ensembl
RGD
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 sphingolipid transporter 2 acts_upstream_of_or_within ISO MGI:4460276 (MGI:5442641|PMID:22664872) RGD PMID:22664872 MGI:5442641 NCBI chr10:59,010,428...59,049,482
Ensembl chr10:59,010,428...59,049,482
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682213 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:11,033,400...11,047,284
Ensembl chr 7:11,033,317...11,047,437
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2681766 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,857,289...29,985,932
Ensembl chr 3:29,862,473...29,996,865
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:23,668,363...23,693,162
Ensembl chr  X:23,668,363...23,693,162
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:49,626,871...49,750,389
Ensembl chr12:49,626,871...49,746,272
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    pigmentation 100
      cellular pigmentation + 44
      developmental pigmentation + 51
      ocellus pigmentation + 0
      pigment accumulation + 10
      pigment metabolic process involved in pigmentation + 2
      regulation of pigmentation + 13
paths to the root