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ONTOLOGY REPORT - ANNOTATIONS


Term:pigmentation
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Accession:GO:0043473 term browser browse the term
Definition:The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
Synonyms:only_in_taxon: NCBITaxon:131567 ! cellular organisms



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pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (MGI:1330543|PMID:9931340) RGD PMID:9931340 MGI:1330543 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Arcn1 archain 1 acts_upstream_of_or_within ISO MGI:2671790 (MGI:4454933|PMID:20502676) RGD PMID:20502676 MGI:4454933 NCBI chr 8:45,057,617...45,082,224
Ensembl chr 8:45,057,619...45,082,247
JBrowse link
G Asip agouti signaling protein acts_upstream_of_or_within ISO MGI:1856798 (MGI:61184|PMID:17247639) RGD PMID:17247639 MGI:61184 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856096|MGI:1856097|MGI:1856098|MGI:1856099|MGI:1856100|MGI:1856101|MGI:1856322|MGI:1856323|MGI:1856324|MGI:1856466|MGI:1856479|MGI:2447843|MGI:3588774 (MGI:3616522|PMID:16338116), (MGI:50550|PMID:1752214), (MGI:53773|PMID:4561716), (MGI:53908|PMID:4670054), (MGI:53940|PMID:4858102), (MGI:71790|PMID:2473662) RGD PMID:1752214 PMID:2473662 PMID:4561716 PMID:4670054 PMID:4858102 More... MGI:3616522 MGI:50550 MGI:53773 MGI:53908 MGI:53940 MGI:61157 MGI:61250 MGI:61313 MGI:63033 MGI:63057 MGI:64387 MGI:71790 MGI:72704 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Atrn attractin involved_in
acts_upstream_of_or_within
IMP
ISO
PMID:11209055
MGI:1856081|MGI:1856082 (MGI:3771742|PMID:18064672)
RGD PMID:18064672 PMID:11209055 MGI:3771742 MGI:48643, RGD:67998 NCBI chr 3:118,110,320...118,244,326
Ensembl chr 3:118,110,229...118,244,322
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (MGI:63353|PMID:8402909) RGD PMID:8402909 MGI:63353 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in
acts_upstream_of_or_within
ISO (PMID:16385460)
MGI:1857021 (MGI:3522060|PMID:15265785), (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:77039|PMID:2513223)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:15265785 PMID:16385460 MGI:3522060 MGI:55273 MGI:56449 MGI:77039 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cd63 Cd63 molecule involved_in ISO (MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:5569478 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:8901575)
(MGI:4412464|PMID:11434569)
GO_REF:0000024
RGD
UniProt
PMID:8901575 PMID:11434569 GO_REF:0000024 MGI:4412464 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (MGI:50485|PMID:1537334) RGD PMID:1537334 MGI:50485 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
JBrowse link
G Dock7 dedicator of cytokinesis 7 acts_upstream_of_or_within ISO MGI:1856946 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 5:113,599,371...113,782,871
Ensembl chr 5:113,600,198...113,782,813
JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO MGI:3576789 (MGI:3576468|PMID:9140068) RGD PMID:9140068 MGI:3576468 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Eda ectodysplasin-A acts_upstream_of_or_within ISO MGI:1856197|MGI:1858152 (MGI:53773|PMID:4561716) RGD PMID:4561716 MGI:53773 MGI:65389 NCBI chr  X:65,078,454...65,480,172
Ensembl chr  X:65,078,673...65,480,172
JBrowse link
G Edar ectodysplasin-A receptor acts_upstream_of_or_within ISO MGI:1856017 (MGI:54784|PMID:544312) RGD PMID:544312 MGI:54784 NCBI chr20:26,587,836...26,666,543
Ensembl chr20:26,587,839...26,666,494
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP
ISO
homozygous sl mutation results in white coat color, occasionally with pigmented spots on head or hip
MGI:1856148 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:8570650 MGI:77000, RGD:628515 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO MGI:1857163 (MGI:1194987|PMID:9362463) RGD PMID:9362463 MGI:1194987 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
JBrowse link
G Fig4 FIG4 phosphoinositide 5-phosphatase acts_upstream_of_or_within ISO MGI:3716838 (MGI:3715385|PMID:17572665), (MGI:5296993|PMID:22028665) RGD PMID:17572665 PMID:22028665 MGI:3715385 MGI:5296993 NCBI chr20:44,600,603...44,724,047
Ensembl chr20:44,600,603...44,723,844
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:55273|PMID:7089489), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:7089489 MGI:55273 MGI:77000 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 acts_upstream_of_or_within ISO MGI:1856707 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 2:102,484,574...102,527,580
Ensembl chr 2:102,484,574...102,526,047
JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 acts_upstream_of_or_within ISO MGI:1856147 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 acts_upstream_of_or_within ISO MGI:1856147|MGI:1856544 (MGI:3522060|PMID:15265785), (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:15265785 PMID:17247639 MGI:3522060 MGI:61184 MGI:77000 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in
acts_upstream_of_or_within
ISO (MGI:3040777|PMID:15067126)
MGI:97306 (MGI:1351242|PMID:10620616)
RGD PMID:10620616 PMID:15067126 MGI:1351242 MGI:3040777 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Krt76 keratin 76 acts_upstream_of_or_within ISO MGI:4363117 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 7:133,016,990...133,025,414
Ensembl chr 7:133,016,992...133,025,496
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within
involved_in
IMP
ISO
MGI:1855968|MGI:2660913 (MGI:55273|PMID:7089489), (MGI:56449|PMID:4031470), (MGI:73117|PMID:13943454), (MGI:77039|PMID:2513223)
(PMID:10648412)
RGD PMID:2513223 PMID:4031470 PMID:7089489 PMID:10648412 PMID:13943454 More... MGI:55273 MGI:56449 MGI:73117 MGI:77039, RGD:1302441 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Mc1r melanocortin 1 receptor acts_upstream_of_or_within ISO MGI:1856029 RGD MGI:87265 NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
JBrowse link
G Mfsd12 major facilitator superfamily domain containing 12 acts_upstream_of_or_within ISO MGI:1856888 RGD MGI:60250 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:12086670 MGI:2180980 MGI:77000 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:17247639 MGI:61184 MGI:77000 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:3141922 PMID:7828830 MGI:68399 MGI:68866 MGI:77000 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (MGI:3712581|PMID:17523175) RGD PMID:17523175 MGI:3712581 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO
IMP
MGI:1856004|MGI:1856005|MGI:1856008|MGI:1856407|MGI:1856847|MGI:1858058|MGI:1858059|MGI:1858060|MGI:1858061|MGI:1858062|MGI:1858063|MGI:1858064|MGI:1858065|MGI:1858066|MGI:1860204|MGI:1891626|MGI:1891639|MGI:2658702|MGI:3583341|MGI:5641704 (MGI:1203759|PMID:9560408), (MGI:1203760|PMID:9560409), (MGI:55563|PMID:6305507), (MGI:5569175|PMID:24721909), (MGI:56220|PMID:6098826), (MGI:5779494|PMID:25340873), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:68399|PMID:3141922), (MGI:68866|PMID:7828830), (MGI:73393|PMID:7774591), (MGI:73808|PMID:3422417), (MGI:77000|PMID:2379821)
PMID:10920234
RGD PMID:2379821 PMID:3141922 PMID:3422417 PMID:6098826 PMID:6305507 More... MGI:1203759 MGI:1203760 MGI:55563 MGI:5569175 MGI:56220 MGI:5779494 MGI:60423 MGI:61184 MGI:61192 MGI:68399 MGI:68866 MGI:73393 MGI:73808 MGI:77000, RGD:61493 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 acts_upstream_of_or_within ISO MGI:4362924 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857444|MGI:96677 (MGI:1350817|PMID:10594763), (MGI:1351242|PMID:10620616), (MGI:1859711|PMID:10844550)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:10594763 PMID:10620616 PMID:10844550 GO_REF:0000024 GO_REF:0000107 MGI:1350817 MGI:1351242 MGI:1859711 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856114 (MGI:1202196|PMID:9548375), (MGI:61184|PMID:17247639), (MGI:73117|PMID:13943454), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:9548375 PMID:13943454 PMID:17247639 MGI:1202196 MGI:61184 MGI:73117 MGI:77000 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Rack1 receptor for activated C kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5660834 (MGI:5648195|PMID:23212600)
GO_REF:0000107
RGD
Ensembl
PMID:23212600 GO_REF:0000107 MGI:5648195 NCBI chr10:33,169,415...33,174,896
Ensembl chr10:33,169,169...33,174,975
JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:3045113 (MGI:3574257|PMID:15703196) RGD PMID:15703196 MGI:3574257 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in ISO (PMID:12444107)
(MGI:2446014|PMID:12444107)
RGD PMID:12444107 MGI:2446014 NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
JBrowse link
G Sparc secreted protein acidic and cysteine rich acts_upstream_of_or_within ISO MGI:4432869 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex acts_upstream_of_or_within ISO MGI:4353996 (MGI:3852572|PMID:19624305) RGD PMID:19624305 MGI:3852572 NCBI chr 5:131,897,250...131,943,953
Ensembl chr 5:131,897,275...131,943,904
JBrowse link
G Trappc6a trafficking protein particle complex subunit 6A acts_upstream_of_or_within ISO MGI:3688725 (MGI:3688835|PMID:16697553) RGD PMID:16697553 MGI:3688835 NCBI chr 1:79,158,587...79,165,502
Ensembl chr 1:79,158,529...79,165,493
JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
MGI:1855976|MGI:1855978 (MGI:1202196|PMID:9548375), (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639)
PMID:21873635
RGD PMID:9548375 PMID:13880466 PMID:17247639 PMID:15760344 PMID:21873635 MGI:1202196 MGI:60423 MGI:61184, RGD:1599687, RGD:13792537 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
G Tyrp1 tyrosinase-related protein 1 acts_upstream_of_or_within ISO MGI:1855960|MGI:1855962 (MGI:60423|PMID:13880466), (MGI:61184|PMID:17247639), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:13880466 PMID:17247639 MGI:60423 MGI:61184 MGI:77000 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
G Vangl1 VANGL planar cell polarity protein 1 acts_upstream_of_or_within ISO MGI:4365105 (MGI:5779494|PMID:25340873) RGD PMID:25340873 MGI:5779494 NCBI chr 2:189,586,681...189,637,609
Ensembl chr 2:189,589,229...189,637,619
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes acts_upstream_of_or_within ISO MGI:1856687 (MGI:53893|PMID:4777306) RGD PMID:4777306 MGI:53893 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
cellular pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pomc proopiomelanocortin involved_in ISO
IEA
(PMID:9620771)
GO_REF:0000107
RGD
Ensembl
PMID:9620771 GO_REF:0000107 NCBI chr 6:26,939,844...26,945,666
Ensembl chr 6:26,939,837...26,945,664
JBrowse link
developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (MGI:2154874|PMID:11709185), (MGI:2156164|PMID:8170972)
(MGI:1352325|PMID:10674380)
RGD PMID:8170972 PMID:10674380 PMID:11709185 MGI:1352325 MGI:2154874 MGI:2156164 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:2154874|PMID:11709185) RGD PMID:11709185 MGI:2154874 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3045416|PMID:15102850), (MGI:54946|PMID:7203014) RGD PMID:7203014 PMID:15102850 MGI:3045416 MGI:54946 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (MGI:2177902|PMID:11912185) RGD PMID:11912185 MGI:2177902 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Dct dopachrome tautomerase acts_upstream_of_or_within ISO MGI:1856379 (MGI:3041903|PMID:15060160) RGD PMID:15060160 MGI:3041903 NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
JBrowse link
G Ednra endothelin receptor type A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856149 (MGI:3055244|PMID:15322542)
PMID:21873635
RGD PMID:15322542 PMID:21873635 MGI:3055244, RGD:13792537 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151589 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:8,163,752...8,177,636
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2151661 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672
JBrowse link
G Hps5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,281,626...97,320,945
Ensembl chr 1:97,247,598...97,321,019
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:1856161|MGI:1856164|MGI:1856266|MGI:2449782|MGI:2660628 (MGI:3055244|PMID:15322542), (MGI:3778519|PMID:18454205) RGD PMID:15322542 PMID:18454205 MGI:3055244 MGI:3778519 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Mreg melanoregulin acts_upstream_of_or_within ISO MGI:1856847 (MGI:3513741|PMID:15550542) RGD PMID:15550542 MGI:3513741 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:3513741|PMID:15550542) RGD PMID:15550542 MGI:3513741 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within ISO MGI:1856123 (MGI:2157189|PMID:11756244) RGD PMID:11756244 MGI:2157189 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:1856173 (MGI:3055244|PMID:15322542) RGD PMID:15322542 MGI:3055244 NCBI chr 9:79,567,455...79,664,042
Ensembl chr 9:79,568,634...79,664,042
JBrowse link
G Saa4 serum amyloid A4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,247,580...97,251,882 JBrowse link
G Slc45a2 solute carrier family 45, member 2 acts_upstream_of_or_within ISO MGI:1856227|MGI:1856581|MGI:1857540 (MGI:2156131|PMID:11700328) RGD PMID:11700328 MGI:2156131 NCBI chr 2:59,963,599...59,996,408
Ensembl chr 2:59,963,706...59,996,317
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO MGI:1861983 (MGI:1861752|PMID:10932191) RGD PMID:10932191 MGI:1861752 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522
JBrowse link
endosome to melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd27 ankyrin repeat domain 27 involved_in ISO (MGI:5607516|PMID:21187829) RGD PMID:21187829 MGI:5607516 NCBI chr 1:88,251,216...88,303,615
Ensembl chr 1:88,251,226...88,303,615
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr19:37,744,666...37,831,131
Ensembl chr19:37,744,633...37,829,167
JBrowse link
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cd63 Cd63 molecule involved_in ISO
IEA
ISS
(PMID:21962903)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21962903 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774) RGD PMID:22511774 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
erythrophore differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sod2 superoxide dismutase 2 acts_upstream_of_or_within ISO MGI:1857344 (MGI:3505659|PMID:15205258) RGD PMID:15205258 MGI:3505659 NCBI chr 1:47,638,318...47,645,163
Ensembl chr 1:47,636,528...47,645,189
JBrowse link
establishment of melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
JBrowse link
G Shroom2 shroom family member 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of
involved_in
ISO
IEA
MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205)
GO_REF:0000107
RGD
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of
involved_in
ISO
IEA
MGI:2660628 (MGI:3778519|PMID:18454205)
GO_REF:0000107
RGD
Ensembl
PMID:18454205 GO_REF:0000107 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:104554|MGI:2156165|MGI:2158305 (MGI:2154874|PMID:11709185), (MGI:2180980|PMID:12086670), (MGI:81816|PMID:8758925)
MGI:2158305 (MGI:3618415|PMID:16427619)
RGD PMID:8758925 PMID:11709185 PMID:12086670 PMID:16427619 MGI:2154874 MGI:2180980 MGI:3618415 MGI:81816 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO MGI:1856982 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:77000 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 involved_in
acts_upstream_of_or_within
ISO
ISS
IBA
(PMID:8901575)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:8901575 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:67,350,376...67,355,072
Ensembl chr  X:67,350,373...67,355,162
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO (MGI:85072|PMID:9012511) RGD PMID:9012511 MGI:85072 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IDA
ISO
MGI:1856148 (MGI:77000|PMID:2379821), (MGI:85072|PMID:9012511) RGD PMID:2379821 PMID:9012511 PMID:11709437 MGI:77000 MGI:85072, RGD:628459 NCBI chr15:80,640,839...80,672,115
Ensembl chr15:80,643,043...80,672,115
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO
ISS
(PMID:28964717)
GO_REF:0000024
RGD
UniProt
PMID:28964717 GO_REF:0000024 NCBI chr 1:20,698,746...20,763,741
Ensembl chr 1:20,698,764...20,763,715
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:3720956 (MGI:3796727|PMID:18397875) RGD PMID:18397875 MGI:3796727 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO MGI:1856712 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 acts_upstream_of_or_within ISO MGI:1856931 (MGI:2175993|PMID:11836498) RGD PMID:11836498 MGI:2175993 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Hps6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856544 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:244,853,256...244,855,865
Ensembl chr 1:244,853,194...244,855,883
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in ISO (MGI:3612335|PMID:15768389) RGD PMID:15768389 MGI:3612335 NCBI chr14:32,547,459...32,624,694
Ensembl chr14:32,548,877...32,624,652
JBrowse link
G Lrmda leucine rich melanocyte differentiation associated involved_in ISO (PMID:23395477) RGD PMID:23395477 NCBI chr15:1,223,098...2,284,764
Ensembl chr15:1,225,710...2,284,749
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:5049797|PMID:21610032)
UniProt
RGD
PMID:21610032 GO_REF:0000024 MGI:5049797 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
MGI:1856088|MGI:1856095|MGI:88138 (MGI:2180980|PMID:12086670), (MGI:77000|PMID:2379821)
Ensembl
RGD
PMID:2379821 PMID:12086670 PMID:21873635 GO_REF:0000107 MGI:2180980 MGI:77000, RGD:13792537 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2149529|PMID:11504925), (MGI:77000|PMID:2379821) RGD PMID:2379821 PMID:11504925 MGI:2149529 MGI:77000 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1856847 (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:7828830 PMID:21873635 MGI:68866 MGI:77000, RGD:13792537 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:59447|PMID:1996138), (MGI:68866|PMID:7828830), (MGI:77000|PMID:2379821) RGD PMID:1996138 PMID:2379821 PMID:7828830 MGI:59447 MGI:68866 MGI:77000 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1856114 (MGI:77000|PMID:2379821)
PMID:21873635
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
JBrowse link
G Olr59 olfactory receptor 59 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27226631)
Ensembl
UniProt
RGD
PMID:27226631 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:157,193,051...157,227,707
Ensembl chr 1:157,193,080...157,211,179
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:77000|PMID:2379821) RGD PMID:2379821 MGI:52947 MGI:77000 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Slc24a5 solute carrier family 24 member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO MGI:3701358 (MGI:3701016|PMID:16790476) RGD PMID:16790476 MGI:3701016 NCBI chr 7:110,725,274...110,735,544
Ensembl chr 7:110,725,274...110,735,544
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855962 (MGI:77000|PMID:2379821)
RGD PMID:2379821 PMID:21873635 MGI:77000, RGD:13792537 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb6 ATP binding cassette subfamily B member 6 involved_in ISO
ISS
(PMID:29940187)
GO_REF:0000024
RGD
UniProt
PMID:29940187 GO_REF:0000024 NCBI chr 9:76,668,554...76,677,263
Ensembl chr 9:76,668,554...76,676,924
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IBA
ISO
PMID:21873635
(PMID:23084991)
RGD PMID:23084991 PMID:21873635 RGD:13792537 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 involved_in ISO
IBA
(PMID:23084991)
PMID:21873635
RGD PMID:23084991 PMID:21873635 RGD:13792537 NCBI chr12:44,264,037...44,294,791
Ensembl chr12:44,264,037...44,294,632
JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:22511774), (PMID:23084991) RGD PMID:22511774 PMID:23084991 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Trappc6a trafficking protein particle complex subunit 6A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3688725 (MGI:3688835|PMID:16697553)
RGD PMID:16697553 PMID:21873635 MGI:3688835, RGD:13792537 NCBI chr 1:79,158,587...79,165,502
Ensembl chr 1:79,158,529...79,165,493
JBrowse link
melanosome localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Mlph melanophilin acts_upstream_of_or_within ISO MGI:1856674 (MGI:2177987|PMID:11887186), (MGI:3028456|PMID:14730011), (MGI:3614727|PMID:11886590) RGD PMID:11886590 PMID:11887186 PMID:14730011 MGI:2177987 MGI:3028456 MGI:3614727 NCBI chr 9:91,507,410...91,542,984
Ensembl chr 9:91,507,591...91,542,983
JBrowse link
G Mreg melanoregulin involved_in ISO (MGI:5447858|PMID:22940130) RGD PMID:22940130 MGI:5447858 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004 (MGI:1930900|PMID:11266470), (MGI:3028456|PMID:14730011), (MGI:85369|PMID:8962090) RGD PMID:8962090 PMID:11266470 PMID:14730011 MGI:1930900 MGI:3028456 MGI:85369 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Rab27a RAB27A, member RAS oncogene family involved_in
acts_upstream_of_or_within
ISO (PMID:15357836)
MGI:1856656 (MGI:1930900|PMID:11266470)
RGD PMID:11266470 PMID:15357836 MGI:1930900 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in ISO
IEA
(PMID:15790593)
GO_REF:0000107
RGD
Ensembl
PMID:15790593 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:15790593) RGD PMID:15790593 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970
JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1m1 adaptor related protein complex 1 subunit mu 1 involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr16:17,586,886...17,602,410
Ensembl chr16:17,584,730...17,602,403
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within
ISO (PMID:11452004), (PMID:19841138)
(MGI:1330543|PMID:9931340)
RGD PMID:9931340 PMID:11452004 PMID:19841138 MGI:1330543 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935
JBrowse link
G Asip agouti signaling protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855937 (MGI:1202196|PMID:9548375)
RGD PMID:9548375 PMID:21873635 MGI:1202196, RGD:13792537 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 acts_upstream_of_or_within ISO MGI:1857021 (MGI:3522060|PMID:15265785) RGD PMID:15265785 MGI:3522060 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO MGI:2449643 (MGI:1354542|PMID:11110696) RGD PMID:11110696 MGI:1354542 NCBI chr14:74,043,025...74,044,325
Ensembl chr14:74,043,015...74,044,531
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in IBA
ISO
PMID:21873635
(PMID:19717472)
RGD PMID:19717472 PMID:21873635 RGD:13792537 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615
JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968|MGI:3620573 (MGI:3618562|PMID:16518687), (MGI:53824|PMID:4634048) RGD PMID:4634048 PMID:16518687 MGI:3618562 MGI:53824 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA
(PMID:29584722)
PMID:21873635
(MGI:6152906|PMID:29584722)
RGD PMID:29584722 PMID:21873635 MGI:6152906, RGD:13792537 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868
JBrowse link
G Pmel premelanosome protein involved_in IBA
ISO
PMID:21873635
(PMID:11694580)
RGD PMID:11694580 PMID:21873635 RGD:13792537 NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:43,307,757...43,313,420
Ensembl chr13:43,307,775...43,313,417
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Shroom2 shroom family member 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3710716|PMID:16987870)
UniProt
RGD
PMID:16987870 GO_REF:0000024 MGI:3710716 NCBI chr  X:21,812,469...21,983,724
Ensembl chr  X:21,812,469...21,984,153
JBrowse link
G Tyrp1 tyrosinase-related protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1855960 (MGI:1202196|PMID:9548375)
RGD PMID:9548375 PMID:21873635 MGI:1202196, RGD:13792537 NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
JBrowse link
melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1855937 (MGI:1202196|PMID:9548375)
GO_REF:0000107
RGD
Ensembl
PMID:9548375 GO_REF:0000107 MGI:1202196 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO
ISS
(PMID:17182842)
GO_REF:0000024
RGD
UniProt
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
G Dctn1 dynactin subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 4:115,671,024...115,703,824
Ensembl chr 4:115,661,638...115,703,815
JBrowse link
G Dctn2 dynactin subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5492030|PMID:22275436)
Ensembl
RGD
PMID:22275436 GO_REF:0000107 MGI:5492030 NCBI chr 7:63,092,061...63,107,560
Ensembl chr 7:63,092,057...63,108,543
JBrowse link
G Gpr143 G protein-coupled receptor 143 involved_in ISO (PMID:19717472) RGD PMID:19717472 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IDA positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Mreg melanoregulin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5492030|PMID:22275436)
RGD PMID:22275436 PMID:21873635 MGI:5492030, RGD:13792537 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within ISO MGI:1856004|MGI:1858077 (MGI:1202196|PMID:9548375), (MGI:3653524|PMID:11266473), (MGI:5569175|PMID:24721909), (MGI:87417|PMID:9133672) RGD PMID:9133672 PMID:9548375 PMID:11266473 PMID:24721909 MGI:1202196 MGI:3653524 MGI:5569175 MGI:87417 NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5487521|PMID:21291502)
PMID:21873635
UniProt
RGD
PMID:21291502 PMID:21873635 GO_REF:0000024 MGI:5487521, RGD:13792537 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525
JBrowse link
G Rab11b RAB11B, member RAS oncogene family involved_in ISS
ISO
GO_REF:0000024
(MGI:5487521|PMID:21291502)
UniProt
RGD
PMID:21291502 GO_REF:0000024 MGI:5487521 NCBI chr 7:14,521,448...14,534,589
Ensembl chr 7:14,521,368...14,534,593
JBrowse link
G Rab17 RAB17, member RAS oncogene family involved_in ISO (MGI:5487521|PMID:21291502) RGD PMID:21291502 MGI:5487521 NCBI chr 9:91,552,924...91,566,759
Ensembl chr 9:91,553,464...91,566,451
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (MGI:5526918|PMID:22854043) RGD PMID:22854043 MGI:5526918 NCBI chr14:94,422,219...94,448,799
Ensembl chr14:94,415,275...94,448,248
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3653524|PMID:11266473) RGD PMID:11266473 MGI:3653524 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807630|PMID:17464332) RGD PMID:17464332 MGI:3807630 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
pigment cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl4 ADAMTS-like 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5698751|PMID:26405179)
GO_REF:0000107
RGD
Ensembl
PMID:26405179 GO_REF:0000107 MGI:5698751 NCBI chr 2:183,235,634...183,247,091
Ensembl chr 2:183,235,646...183,246,848
JBrowse link
pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO (MGI:5569478|PMID:21962903) RGD PMID:21962903 MGI:5569478 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
pigment granule localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405), (MGI:3629265|PMID:14609561) RGD PMID:14609561 PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 MGI:3629265 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3047015|PMID:14978221), (MGI:3512820|PMID:15572405) RGD PMID:14978221 PMID:15572405 MGI:3047015 MGI:3512820 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
pigment granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd63 Cd63 molecule involved_in ISO
ISS
(PMID:21962903)
GO_REF:0000024
RGD
UniProt
PMID:21962903 GO_REF:0000024 NCBI chr 7:1,325,108...1,340,447
Ensembl chr 7:1,325,103...1,399,178
JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:2158305 (MGI:81816|PMID:8758925) RGD PMID:8758925 MGI:81816 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Lyst lysosomal trafficking regulator acts_upstream_of_or_within ISO MGI:1855968 (MGI:54133|PMID:1278263) RGD PMID:1278263 MGI:54133 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480
JBrowse link
pigment granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:2155422 (MGI:1267003|PMID:9620764), (MGI:3512820|PMID:15572405) RGD PMID:9620764 PMID:15572405 MGI:1267003 MGI:3512820 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Rab27a RAB27A, member RAS oncogene family acts_upstream_of_or_within ISO MGI:1856656 (MGI:3512820|PMID:15572405) RGD PMID:15572405 MGI:3512820 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
JBrowse link
pigment metabolic process involved in pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mfsd12 major facilitator superfamily domain containing 12 involved_in ISO (PMID:33208952)
(MGI:6492453|PMID:33208952)
(PMID:31117290)
RGD PMID:31117290 PMID:33208952 MGI:6492453 NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
JBrowse link
G Tbx2 T-box transcription factor 2 acts_upstream_of_negative_effect ISO (MGI:6814712|PMID:26971330) RGD PMID:26971330 MGI:6814712 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:99702 (MGI:894988|PMID:9241272) RGD PMID:9241272 MGI:894988 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (MGI:1352325|PMID:10674380), (MGI:894988|PMID:9241272)
MGI:88138 (MGI:894988|PMID:9241272)
RGD PMID:9241272 PMID:10674380 MGI:1352325 MGI:894988 NCBI chr13:22,689,783...22,853,920 JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:2158305 (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (MGI:3618415|PMID:16427619) RGD PMID:16427619 MGI:3618415 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
positive regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh3 cadherin 3 involved_in ISO (PMID:23334344) RGD PMID:23334344 NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO
GO_REF:0000024
(PMID:17182842)
UniProt
RGD
PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308
JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (MGI:3778519|PMID:18454205), (MGI:60945|PMID:14138974) RGD PMID:14138974 PMID:18454205 MGI:3778519 MGI:60945 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777
JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (MGI:3778519|PMID:18454205) RGD PMID:18454205 MGI:3778519 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (MGI:60945|PMID:14138974) RGD PMID:14138974 MGI:60945 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856687 (MGI:2450053|PMID:12538872)
Ensembl
RGD
PMID:12538872 GO_REF:0000107 MGI:2450053 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 sphingolipid transporter 2 acts_upstream_of_or_within ISO MGI:4460276 (MGI:5442641|PMID:22664872) RGD PMID:22664872 MGI:5442641 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link
regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682213 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 7:8,163,752...8,177,636
Ensembl chr 7:8,162,750...8,179,812
JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2681766 (MGI:3055244|PMID:15322542)
Ensembl
RGD
PMID:15322542 GO_REF:0000107 MGI:3055244 NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672
JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) RGD PMID:24769727 MGI:5574413 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
regulation of melanosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) RGD PMID:18697795 MGI:3813974 NCBI chr  X:22,002,914...22,027,720
Ensembl chr  X:22,002,914...22,027,715
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:43,624,778...43,735,375
Ensembl chr12:43,624,897...43,731,262
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    pigmentation 102
      cellular pigmentation + 43
      developmental pigmentation + 55
      ocellus pigmentation + 0
      pigment accumulation + 10
      pigment metabolic process involved in pigmentation + 3
      regulation of pigmentation + 13
paths to the root