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lipopolysaccharide binding - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:lipopolysaccharide binding
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Accession:GO:0001530 term browser browse the term
Definition:Binding to a lipopolysaccharide.
Synonyms:exact_synonym: LPS binding
 broad_synonym: endotoxin binding

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lipopolysaccharide binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 enables IEA
ISO 		GO_REF:0000107
(PMID:21245295) 		Ensembl
RGD		 PMID:21245295 GO_REF:0000107 NCBI chr 7:106,404,827...106,476,902
Ensembl chr 7:106,404,958...106,476,902 		JBrowse link
G Bpi bactericidal/permeability-increasing protein enables IDA
ISO
IBA 		(PMID:8409400)
GO_REF:0000033 		RGD
GO_Central		 PMID:8409400 PMID:15009116 GO_REF:0000033, RGD:1303979 NCBI chr 3:146,909,626...146,936,487
Ensembl chr 3:146,909,629...146,936,221 		JBrowse link
G Bpifa2 BPI fold containing family A, member 2 enables ISO
IBA 		(PMID:21833535)
GO_REF:0000033 		RGD
GO_Central		 PMID:21833535 GO_REF:0000033 NCBI chr 3:142,493,379...142,501,343
Ensembl chr 3:142,493,379...142,501,337 		JBrowse link
G Bpifa2f BPI fold containing family A, member 2F enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:142,521,255...142,533,462
Ensembl chr 3:142,524,881...142,533,462 		JBrowse link
G Camp cathelicidin antimicrobial peptide enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:109,841,729...109,843,543
Ensembl chr 8:109,841,729...109,843,543 		JBrowse link
G Casp4 caspase 4 enables ISO (PMID:25119034), (PMID:37993712)
(PMID:25119034), (PMID:37001519) 		RGD PMID:25119034 PMID:37001519 PMID:37993712 NCBI chr 8:2,599,017...2,635,097
Ensembl chr 8:2,598,876...2,635,092 		JBrowse link
G Cd14 CD14 molecule enables ISO
IBA 		(PMID:12594207)
GO_REF:0000033 		RGD
GO_Central		 PMID:12594207 GO_REF:0000033 NCBI chr18:28,609,558...28,611,409
Ensembl chr18:28,335,340...28,337,261 		JBrowse link
G Cd6 Cd6 molecule enables ISO
IEA 		(PMID:17601777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17601777 GO_REF:0000107 NCBI chr 1:207,442,873...207,481,703
Ensembl chr 1:207,442,877...207,481,634 		JBrowse link
G Defb15 defensin beta 15 enables ISO (PMID:24189797) RGD PMID:24189797 NCBI chr16:70,141,193...70,143,891
Ensembl chr16:70,141,193...70,143,834 		JBrowse link
G Defb21 defensin beta 21 enables ISO (PMID:33181266) RGD PMID:33181266 NCBI chr 3:141,042,810...141,044,228
Ensembl chr 3:141,042,810...141,044,184 		JBrowse link
G Defb24 defensin beta 24 enables ISO (PMID:24449502) RGD PMID:24449502 NCBI chr 3:141,046,571...141,052,706
Ensembl chr 3:141,046,564...141,052,753 		JBrowse link
G Defb34 defensin beta 34 enables ISO (PMID:24189797) RGD PMID:24189797 NCBI chr16:70,720,200...70,723,134
Ensembl chr16:70,720,500...70,723,098 		JBrowse link
G Defb44 defensin beta 44 enables ISO (PMID:34481960) RGD PMID:34481960 NCBI chr15:37,311,888...37,313,579
Ensembl chr15:37,312,308...37,313,370 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 enables ISO (PMID:19189310) RGD PMID:19189310 NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478 		JBrowse link
G Drosha drosha ribonuclease III enables ISO
IEA 		(PMID:20180804)
GO_REF:0000107 		RGD
Ensembl		 PMID:20180804 GO_REF:0000107 NCBI chr 2:63,591,885...63,703,688
Ensembl chr 2:61,864,970...61,976,688 		JBrowse link
G F2 coagulation factor II, thrombin enables ISO
IEA 		(PMID:20421939)
GO_REF:0000107 		RGD
Ensembl		 PMID:20421939 GO_REF:0000107 NCBI chr 3:98,051,958...98,065,246
Ensembl chr 3:77,596,198...77,609,486 		JBrowse link
G Gbp1 guanylate binding protein 1 enables ISO (PMID:32510692), (PMID:32581219) RGD PMID:32510692 PMID:32581219 NCBI chr 2:231,398,136...231,432,773
Ensembl chr 2:231,398,163...231,432,131
Ensembl chr 2:231,398,163...231,432,131 		JBrowse link
G Hist2h2be histone cluster 2 H2B family member E enables ISO (PMID:11859126) RGD PMID:11859126 NCBI chr 2:183,780,583...183,783,030 JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:21660935) RGD PMID:21660935 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 enables ISO (PMID:17164250) RGD PMID:17164250 NCBI chr 9:64,073,610...64,084,332
Ensembl chr 9:56,579,201...56,589,662 		JBrowse link
G Lbp lipopolysaccharide binding protein enables IDA
ISO
IEA
IBA 		(PMID:12594207), (PMID:24120359)
GO_REF:0000104
GO_REF:0000033
(PMID:11079463)
GO_REF:0000107 		RGD
UniProt
GO_Central
Ensembl		 PMID:11079463 PMID:12594207 PMID:24120359 PMID:22580761 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107, RGD:9685189 NCBI chr 3:146,953,889...146,981,032
Ensembl chr 3:146,954,015...146,981,586 		JBrowse link
G Ltf lactotransferrin enables ISO (PMID:15155221)
(PMID:9596699) 		RGD PMID:9596699 PMID:15155221 NCBI chr 8:119,878,344...119,901,189
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
G Ly96 lymphocyte antigen 96 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:2,582,233...2,612,357
Ensembl chr 5:2,582,254...2,612,386 		JBrowse link
G Ninj1 ninjurin 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:26677008)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:26677008 GO_REF:0000024 GO_REF:0000107 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704 		JBrowse link
G Nlrp6 NLR family, pyrin domain containing 6 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:31932628)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:31932628 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:196,004,854...196,011,615
Ensembl chr 1:196,004,953...196,011,113 		JBrowse link
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 enables ISS
ISO
IEA 		GO_REF:0000024
(PMID:37001519)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:37001519 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:134,247,153...134,268,044
Ensembl chr 7:132,374,840...132,389,297 		JBrowse link
G P2rx7 purinergic receptor P2X 7 enables ISO (PMID:11489964) RGD PMID:11489964 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619 		JBrowse link
G Psma1 proteasome 20S subunit alpha 1 enables ISO
IEA 		(PMID:12874245)
GO_REF:0000107 		RGD
Ensembl		 PMID:12874245 GO_REF:0000107 NCBI chr 1:168,442,421...168,453,440
Ensembl chr 1:168,440,936...168,453,472 		JBrowse link
G Psmb4 proteasome 20S subunit beta 4 enables ISO (PMID:12874245) RGD PMID:12874245 NCBI chr 2:182,442,757...182,445,532
Ensembl chr 2:182,442,756...182,445,746 		JBrowse link
G Ptafr platelet-activating factor receptor enables ISO (PMID:9013981) RGD PMID:9013981 NCBI chr 5:150,049,322...150,079,060
Ensembl chr 5:144,765,976...144,795,251 		JBrowse link
G Rnase2 ribonuclease A family member 2 NOT|enables ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:24,449,618...24,450,427
Ensembl chr15:24,449,611...24,450,479 		JBrowse link
G Rnase3 ribonuclease A family member 3 enables ISO (PMID:23992292) RGD PMID:23992292 NCBI chr15:24,511,894...24,512,764
Ensembl chr15:24,511,891...24,512,790 		JBrowse link
G Scarb1 scavenger receptor class B, member 1 enables ISO
IEA 		(PMID:12651854)
GO_REF:0000107 		RGD
Ensembl		 PMID:12651854 GO_REF:0000107 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647 		JBrowse link
G Selp selectin P enables IEA
ISO 		GO_REF:0000107
(PMID:16514062) 		Ensembl
RGD		 PMID:16514062 GO_REF:0000107 NCBI chr13:79,009,379...79,044,994
Ensembl chr13:76,476,295...76,511,845 		JBrowse link
G Sftpd surfactant protein D IDA RGD PMID:18092821 RGD:4143524 NCBI chr16:17,046,491...17,058,968
Ensembl chr16:17,046,483...17,059,927 		JBrowse link
G Spon2 spondin 2 enables ISO
IEA 		(PMID:14691481)
GO_REF:0000107 		RGD
Ensembl		 PMID:14691481 GO_REF:0000107 NCBI chr14:77,505,695...77,518,001
Ensembl chr14:77,511,901...77,517,996 		JBrowse link
G Tlr2 toll-like receptor 2 enables ISO (PMID:11274165) RGD PMID:11274165 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tlr4 toll-like receptor 4 enables IDA
IEA
ISO
IBA 		E. coli K12 LPS
GO_REF:0000107
(PMID:16514062)
GO_REF:0000033 		Ensembl
RGD
GO_Central		 PMID:16514062 PMID:16973131 GO_REF:0000033 GO_REF:0000107, RGD:1643119 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 enables ISO (PMID:12847223), (PMID:19079182) RGD PMID:12847223 PMID:19079182 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
G Tril TLR4 interactor with leucine-rich repeats enables ISO
IBA
IEA 		(PMID:19710467)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:19710467 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:82,922,327...82,927,172
Ensembl chr 4:82,922,328...82,927,172 		JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:246,573,110...246,586,942
Ensembl chr 2:246,573,166...246,586,942 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      carbohydrate derivative binding 2377
        lipopolysaccharide binding 41
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