D9Rat60 Marker Search Result - Rat Genome Database

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Marker: D9Rat60

Symbol: D9Rat60
Previously known as: oxsts11715; R0077-C10; 
RGD ID: 38716
Expected Size: 147 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2948,035,934 - 48,036,057 (+)MAPPERmRatBN7.2
Rnor_6.0952,896,774 - 52,896,896NCBIRnor6.0
Rnor_6.0952,821,860 - 52,821,982NCBIRnor6.0
Rnor_5.0952,562,590 - 52,562,712UniSTSRnor5.0
Rnor_5.0952,487,676 - 52,487,798UniSTSRnor5.0
RGSC_v3.4944,979,838 - 44,979,961RGDRGSC3.4
RGSC_v3.4944,979,839 - 44,979,961UniSTSRGSC3.4
RGSC_v3.1944,981,242 - 44,981,612RGD
Celera945,703,284 - 45,703,406UniSTS
SHRSP x BN Map941.0698UniSTS
SHRSP x BN Map941.0698RGD
FHH x ACI Map932.43RGD
Cytogenetic Map9q22UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   F344/Pit   FHH/Eur   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   MNS/Gib   OM/Ztm   PVG/Pit   SD/Rij   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr  
Genes:   Slc40a1   LOC100911874  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer CAGGCATAAGATCCTGGGTT
Reverse Primer CTATGTTTGCATGTATATGTGTGTG
 
Template 
AGCCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACTAAATCCGTCCCCA
TAATCTCCGTCAGCCTGCTGTTTGCAGGAGTCATTGCTGCTAGAATCGGTAAGAACTCTCTTTC
TGCATACTAAAAAATTACAAACATCATTTTAAAACCTAATGTAGACAATTCAACAATACATTAT
CTGAAATACTTTACAGATATTTATTTAGGCAAAACCCACAGTTTATGTATAGAATTTACTCTCT
AAACATAAAATTTCATGTAATAGTTTAAACTATGTTTGCATGTATATGTGTGTGTATGTAAGTG
TTTAGTTTTTTTCTAAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGGTGTGGTGAGAGAGAACCCAGGATCTTATGCCTGTTAAGCCAGTGGTACC
GAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATT
CCACACAACATACGGCCGGGACATAGAGTGTANGCCTGGGGTGCCC
Strain, Expected Size(s)

ACI/N 150 AVN/Orl 150 BBDP/Rhw 150
BBDR/Rhw 150 BC/CpbU 138 BDIX/Han 138
BDVII/Cub 132 BN-Lx/Cub 126 BN/SsNHsd 126
BP/Cub 132 BUF/Pit 132 DA/PitN 150
F344/Pit 150 FHH/Eur 126 GH/Omr 150
GK/KyoSwe 150 LEW/Pit 150 LH/Mav 150
LN/Mav 150 LOU/CHan 132 M520/N 132
MHS/Gib 126 MNR/N 150 MNRA/N 132
MNS/Gib 150 MR/Pit 132 NEDH/K 142
ODU/N 150 OM/Ztm 126 PVG/Pit 132
SD/Rij 126 SHRSP/Riv 150 SS/Jr 150
WAG/RijKyo 150 WF/Pit 126 WIST/Nhg 150
WKY/OlaHsd 150 WN/N 150 WTC/Kyo 150


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
620180Slc40a1solute carrier family 40 member 194803352648053876Rat
GenBank Nucleotide JH616777.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 30 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat

1 to 10 of 30 rows


Database
Acc Id
Source(s)
NCBI Gene 100911874 UniSTS
  170840 UniSTS