ONTOLOGY REPORT - ANNOTATIONS
Term: melanin biosynthetic process
Accession: GO:0042438
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Definition: The chemical reactions and pathways resulting in the formation of melanins, pigments largely of animal origin. High molecular weight polymers of indole quinone, they are irregular polymeric structures and are divided into three groups: allomelanins in the plant kingdom and eumelanins and phaeomelanins in the animal kingdom.
Synonyms: exact_synonym: melanin anabolism; melanin biosynthesis; melanin formation; melanin synthesis
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Asip
agouti signaling protein
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1855937 (MGI:76308|PMID:7665913) GO_REF:0000107
RGD Ensembl
PMID:7665913
GO_REF:0000107 MGI:76308
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Cited1
Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:4412464|PMID:11434569)
UniProt RGD
PMID:11434569
GO_REF:0000024 MGI:4412464
NCBI chr X:67,350,376...67,355,072
Ensembl chr X:67,350,373...67,355,162
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Dct
dopachrome tautomerase
acts_upstream_of_or_within
ISO
MGI:1856379 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
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Ddt
D-dopachrome tautomerase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr20:12,884,216...12,886,687
Ensembl chr20:12,884,243...12,888,482
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Mc1r
melanocortin 1 receptor
acts_upstream_of_or_within
ISO
MGI:1856028 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr19:51,452,448...51,455,375
Ensembl chr19:51,453,239...51,454,192
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Myo5a
myosin VA
acts_upstream_of_or_within
ISO
MGI:1856004 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
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Oca2
OCA2 melanosomal transmembrane protein
acts_upstream_of_or_within involved_in
ISO IBA
MGI:1856114 (MGI:1202196|PMID:9548375), (MGI:76308|PMID:7665913) PMID:21873635
RGD
PMID:7665913 PMID:9548375 PMID:21873635
MGI:1202196 MGI:76308 , RGD:13792537
NCBI chr 1:107,116,278...107,446,093
Ensembl chr 1:107,116,278...107,446,074
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Pmel
premelanosome protein
acts_upstream_of_or_within
ISO
MGI:1857040 (MGI:76308|PMID:7665913)
RGD
PMID:7665913
MGI:76308
NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
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Slc24a5
solute carrier family 24 member 5
acts_upstream_of
ISO
(MGI:3775882|PMID:18166528)
RGD
PMID:18166528
MGI:3775882
NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231
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Trpc1
transient receptor potential cation channel, subfamily C, member 1
involved_in
IEA ISO
GO_REF:0000107 (PMID:8126111)
Ensembl RGD
PMID:8126111
GO_REF:0000107
NCBI chr 8:96,263,322...96,314,197
Ensembl chr 8:96,263,329...96,314,276
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Tyr
tyrosinase
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:1855976|MGI:1855978 (MGI:1202196|PMID:9548375), (MGI:76308|PMID:7665913) (PMID:8126111)
RGD
PMID:7665913 PMID:8126111 PMID:9548375 PMID:21873635
MGI:1202196 MGI:76308 , RGD:13792537
NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
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Tyrp1
tyrosinase-related protein 1
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Dct
dopachrome tautomerase
involved_in
ISO
(MGI:3690794|PMID:2169885), (MGI:6827472|PMID:33100333)
RGD
PMID:2169885 PMID:33100333
MGI:3690794 MGI:6827472
NCBI chr15:95,062,006...95,100,863
Ensembl chr15:95,062,003...95,100,836
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Mfsd12
major facilitator superfamily domain containing 12
involved_in
ISO
(MGI:5912387|PMID:29025994)
RGD
PMID:29025994
MGI:5912387
NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
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Opn3
opsin 3
involved_in
ISO
(PMID:31097585)
RGD
PMID:31097585
NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
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Rapgef2
Rap guanine nucleotide exchange factor 2
involved_in
ISS ISO
GO_REF:0000024 (MGI:5499726|PMID:16272156)
UniProt RGD
PMID:16272156
GO_REF:0000024 MGI:5499726
NCBI chr 2:164,207,513...164,322,157
Ensembl chr 2:164,207,513...164,244,247
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Slc24a5
solute carrier family 24 member 5
acts_upstream_of_or_within
ISO
(MGI:3775882|PMID:18166528)
RGD
PMID:18166528
MGI:3775882
NCBI chr 3:112,319,305...112,339,231
Ensembl chr 3:112,319,308...112,339,231
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Wnt5a
Wnt family member 5A
involved_in
ISO
(MGI:5619434|PMID:23569434)
RGD
PMID:23569434
MGI:5619434
NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
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Appl1
adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1
involved_in
ISO
(PMID:21291857)
RGD
PMID:21291857
NCBI chr16:2,118,503...2,166,741
Ensembl chr16:2,121,255...2,166,692
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Asip
agouti signaling protein
involved_in
IBA ISO
PMID:21873635 UniProtKB:P07147|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)
RGD
PMID:21949658 PMID:21873635
MGI:5294257 , RGD:13792537
NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
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Atp7a
ATPase copper transporting alpha
involved_in
ISS ISO
GO_REF:0000024 (PMID:11092760)
UniProt RGD
PMID:11092760
GO_REF:0000024
NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354
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Cdh3
cadherin 3
involved_in
ISO
(PMID:23334344)
RGD
PMID:23334344
NCBI chr19:34,393,596...34,444,084
Ensembl chr19:34,393,727...34,444,084
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Gipc1
GIPC PDZ domain containing family, member 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:21291857)
UniProt RGD
PMID:21291857
GO_REF:0000024
NCBI chr19:24,474,291...24,487,083
Ensembl chr19:24,453,123...24,486,997
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Opn3
opsin 3
involved_in
ISO
(PMID:28842328)
RGD
PMID:28842328
NCBI chr13:87,589,330...87,619,847
Ensembl chr13:87,589,333...87,619,847
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Pmel
premelanosome protein
involved_in
ISO
(MGI:5294257|PMID:21949658)
RGD
PMID:21949658
MGI:5294257
NCBI chr 7:1,138,202...1,148,735
Ensembl chr 7:1,138,586...1,148,746
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Rab38
RAB38, member RAS oncogene family
IMP
RGD
PMID:17043139
RGD:152025192
NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
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Tyrp1
tyrosinase-related protein 1
involved_in
ISO
(PMID:21996312) UniProtKB:Q03288|UniProtKB:Q60696 (MGI:5294257|PMID:21949658)
RGD
PMID:21949658 PMID:21996312
MGI:5294257
NCBI chr 5:95,280,982...95,299,516
Ensembl chr 5:95,280,982...95,299,516
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Ctns
cystinosin, lysosomal cystine transporter
involved_in
ISO
(PMID:22649030)
RGD
PMID:22649030
NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120
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Mfsd12
major facilitator superfamily domain containing 12
involved_in
ISO
(PMID:33208952) (MGI:6492453|PMID:33208952) (PMID:31117290)
RGD
PMID:31117290 PMID:33208952
MGI:6492453
NCBI chr 7:8,345,171...8,354,050
Ensembl chr 7:8,347,314...8,353,988
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Slc7a11
solute carrier family 7 member 11
acts_upstream_of_or_within
ISO
MGI:1857061 (MGI:3588610|PMID:16037214)
RGD
PMID:16037214
MGI:3588610
NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
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