Appl1 (adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1) - Rat Genome Database

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Gene: Appl1 (adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1) Rattus norvegicus
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Symbol: Appl1
Name: adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1
RGD ID: 1309388
Description: Predicted to enable several functions, including beta-tubulin binding activity; phospholipid binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; positive regulation of biosynthetic process; and regulation of endocytosis. Is active in postsynapse and presynapse. Human ortholog(s) of this gene implicated in maturity-onset diabetes of the young type 14. Orthologous to human APPL1 (adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1); PARTICIPATES IN colorectal cancer pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1; DCC-interacting protein 13-alpha; LOC290537; RGD1309388; similar to DIP13 alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,125,234 - 2,173,457 (-)NCBIGRCr8
mRatBN7.2162,118,503 - 2,166,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,121,255 - 2,166,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,125,142 - 2,173,305 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,270,829 - 3,318,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,131,417 - 2,179,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,560,103 - 2,602,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,563,520 - 2,602,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,534,851 - 2,581,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,180,613 - 2,227,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,179,191 - 2,228,173 (-)NCBI
Celera162,089,133 - 2,134,528 (-)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Appl1Ratmaturity-onset diabetes of the young type 14  ISOAPPL1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Appl1RatPyruvate Dehydrogenase E1-Beta Deficiency  ISOAPPL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pyruvate dehydrogenase E1-beta deficiencyClinVarPMID:28492532
Appl1Ratseptooptic dysplasia  ISOAPPL1 (Homo sapiens)8554872ClinVar Annotator: match by term: Septo-optic dysplasia sequenceClinVarPMID:28492532 and PMID:32796691
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
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Original Reference(s)
Appl1RatExperimental Liver Cirrhosis  ISOAPPL1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Object Symbol
Species
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Original Reference(s)
Appl1Ratmaturity-onset diabetes of the young type 14  ISOAPPL1 (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
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Original Reference(s)
Appl1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of APPL1 mRNA]CTDPMID:31150632
Appl1Rat(1->4)-beta-D-glucan multiple interactionsISOAppl1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of APPL1 mRNACTDPMID:36331819
Appl1Rat1,2-dimethylhydrazine decreases expressionISOAppl1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of APPL1 mRNACTDPMID:22206623
Appl1Rat1,2-dimethylhydrazine multiple interactionsISOAppl1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of APPL1 mRNACTDPMID:22206623
Appl1Rat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of APPL1 mRNACTDPMID:25380136
Appl1Rat17alpha-ethynylestradiol increases expressionISOAppl1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of APPL1 mRNACTDPMID:17555576
Appl1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of APPL1 mRNACTDPMID:29097150
Appl1Rat17beta-estradiol increases expressionISOAppl1 (Mus musculus)6480464Estradiol results in increased expression of APPL1 mRNACTDPMID:39298647
Appl1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:27291303
Appl1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOAPPL1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Appl1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOAppl1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of APPL1 mRNACTDPMID:19770486
Appl1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAppl1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of APPL1 mRNACTDPMID:21570461
Appl1Rat2,4,6-tribromophenol decreases expressionISOAPPL1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Appl1Rat2-butoxyethanol decreases expressionISOAppl1 (Mus musculus)6480464n-butoxyethanol results in decreased expression of APPL1 mRNACTDPMID:19812364
Appl1Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOAPPL1 (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of APPL1 proteinCTDPMID:31675489
Appl1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOAPPL1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of APPL1 mRNA and [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of APPL1 mRNACTDPMID:28628672
Appl1Rat4,4'-diaminodiphenylmethane increases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in increased expression of APPL1 mRNACTDPMID:25380136
Appl1Rat4,4'-sulfonyldiphenol multiple interactionsISOAPPL1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of APPL1 mRNACTDPMID:28628672
Appl1Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of APPL1 mRNACTDPMID:36041667
Appl1Rat4,4'-sulfonyldiphenol increases expressionISOAppl1 (Mus musculus)6480464bisphenol S results in increased expression of APPL1 mRNACTDPMID:39298647

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Biological Process
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Object Symbol
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Original Reference(s)
Appl1Ratadiponectin-activated signaling pathway involved_inISOAPPL1 (Homo sapiens)1624291 PMID:19661063RGDPMID:19661063
Appl1Ratcellular response to hepatocyte growth factor stimulus involved_inISOAppl1 (Mus musculus)1624291 PMID:26445298RGDPMID:26445298
Appl1Ratinsulin receptor signaling pathway involved_inISOAPPL1 (Homo sapiens)1624291 PMID:26073777RGDPMID:26073777
Appl1Ratinsulin receptor signaling pathway involved_inIBAPANTHER:PTN008708200 and UniProtKB:Q9UKG11600115GO_REF:0000033GO_CentralGO_REF:0000033
Appl1Ratmaintenance of synapse structure involved_inISOAPPL1 (Homo sapiens)1624291 PMID:21236345RGDPMID:21236345
Appl1Ratnegative regulation of Fc-gamma receptor signaling pathway involved in phagocytosis involved_inISOAppl1 (Mus musculus)1624291 PMID:25568335RGDPMID:25568335
Appl1Ratpositive regulation of cytokine production involved in inflammatory response involved_inISOAppl1 (Mus musculus)1624291 PMID:25328665RGDPMID:25328665
Appl1Ratpositive regulation of D-glucose import involved_inISOAPPL1 (Homo sapiens)1624291 PMID:24879834RGDPMID:24879834
Appl1Ratpositive regulation of macropinocytosis involved_inISOAppl1 (Mus musculus)1624291 PMID:27219021RGDPMID:27219021
Appl1Ratpositive regulation of melanin biosynthetic process involved_inISOAPPL1 (Homo sapiens)1624291 PMID:21291857RGDPMID:21291857
Appl1Ratprotein import into nucleus involved_inISOAPPL1 (Homo sapiens)1624291 PMID:26583432RGDPMID:26583432
Appl1Ratregulation of D-glucose import involved_inISOAPPL1 (Homo sapiens)1624291 PMID:17848569RGDPMID:17848569
Appl1Ratregulation of fibroblast migration involved_inISOAppl1 (Mus musculus)1624291 PMID:26445298RGDPMID:26445298
Appl1Ratregulation of G1/S transition of mitotic cell cycle involved_inISOAPPL1 (Homo sapiens)1624291 PMID:15016378RGDPMID:15016378
Appl1Ratregulation of innate immune response involved_inISOAppl1 (Mus musculus)1624291 PMID:27219021RGDPMID:27219021
Appl1Ratregulation of protein localization to plasma membrane involved_inISOAPPL1 (Homo sapiens)1624291 PMID:17848569RGDPMID:17848569
Appl1Ratregulation of toll-like receptor 4 signaling pathway involved_inISOAppl1 (Mus musculus)1624291 PMID:27219021RGDPMID:27219021
Appl1Ratsignaling involved_inIBAMGI:2384914 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Appl1Rattransforming growth factor beta receptor signaling pathway involved_inISOAPPL1 (Homo sapiens)1624291 PMID:26583432RGDPMID:26583432
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Cellular Component
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Object Symbol
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Qualifier
Evidence
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Reference
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Source
Original Reference(s)
Appl1Ratactin cytoskeleton located_inISOAPPL1 (Homo sapiens)1624291 RGDGO_REF:0000052
Appl1Ratcell projection located_inIEAUniProtKB-KW:KW-09661600115GO_REF:0000043UniProtGO_REF:0000043
Appl1Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Appl1Ratcytoplasm located_inIEAInterPro:IPR0041481600115GO_REF:0000002InterProGO_REF:0000002
Appl1Ratcytoplasm located_inISOAPPL1 (Homo sapiens)1624291 PMID:19433865 more ...RGDPMID:19433865 more ...
Appl1Ratcytoplasmic vesicle located_inISOAPPL1 (Homo sapiens)1624291 PMID:18034774RGDPMID:18034774
Appl1Ratcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
Appl1Ratcytosol located_inISOAPPL1 (Homo sapiens)1624291 PMID:17848569RGDGO_REF:0000052 and PMID:17848569
Appl1Ratearly endosome located_inISOAPPL1 (Homo sapiens)1624291 PMID:21645192RGDPMID:21645192
Appl1Ratearly endosome located_inISOAppl1 (Mus musculus)1624291 PMID:21849472RGDPMID:21849472
Appl1Ratearly endosome membrane located_inIEAUniProtKB-SubCell:SL-00931600115GO_REF:0000044UniProtGO_REF:0000044
Appl1Ratearly phagosome located_inISOAppl1 (Mus musculus)1624291 PMID:25568335RGDPMID:25568335
Appl1Ratendosome located_inISOAPPL1 (Homo sapiens)1624291 PMID:26583432RGDPMID:26583432
Appl1Ratendosome located_inISOAppl1 (Mus musculus)1624291 PMID:25568335 and PMID:27219021RGDPMID:25568335 and PMID:27219021
Appl1Ratendosome located_inIEAUniProtKB-KW:KW-09671600115GO_REF:0000043UniProtGO_REF:0000043
Appl1Ratendosome membrane located_inISOAPPL1 (Homo sapiens)1624291 PMID:15016378RGDPMID:15016378
Appl1Ratendosome membrane is_active_inIBAPANTHER:PTN000572460 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Appl1Ratglutamatergic synapse is_active_inISOAPPL1 (Homo sapiens)1624291 PMID:21236345RGDPMID:21236345
Appl1Ratintracellular membrane-bounded organelle located_inISOAPPL1 (Homo sapiens)1624291 RGDGO_REF:0000052
Appl1Ratintracellular vesicle located_inISOAPPL1 (Homo sapiens)1624291 PMID:21291857RGDPMID:21291857
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Molecular Function
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Imported Annotations - KEGG (archival)

Object Symbol
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Evidence
With
Reference
Notes
Source
Original Reference(s)
Appl1Ratcolorectal cancer pathway   IEA 6907045 KEGGrno:05210

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. An APPL1/Akt signaling complex regulates dendritic spine and synapse formation in hippocampal neurons. Majumdar D, etal., Mol Cell Neurosci. 2011 Mar;46(3):633-44. doi: 10.1016/j.mcn.2011.01.003. Epub 2011 Jan 12.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The interaction of Akt with APPL1 is required for insulin-stimulated Glut4 translocation. Saito T, etal., J Biol Chem. 2007 Nov 2;282(44):32280-7. Epub 2007 Sep 11.
PMID:15016378   PMID:17502098   PMID:17581628   PMID:18034774   PMID:18570454   PMID:19056867   PMID:19416712   PMID:19433865   PMID:19661063   PMID:21291857   PMID:21543456   PMID:21552570  
PMID:21645192   PMID:21849472   PMID:23478100   PMID:23497197   PMID:24255018   PMID:24879834   PMID:25099270   PMID:25108566   PMID:25328665   PMID:25416956   PMID:25568335   PMID:26073777  
PMID:26445298   PMID:26583432   PMID:27219021   PMID:27257087   PMID:29406784   PMID:31515488   PMID:34304702   PMID:34919285   PMID:37795615  



Appl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,125,234 - 2,173,457 (-)NCBIGRCr8
mRatBN7.2162,118,503 - 2,166,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,121,255 - 2,166,692 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,125,142 - 2,173,305 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,270,829 - 3,318,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,131,417 - 2,179,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,560,103 - 2,602,035 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,563,520 - 2,602,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,534,851 - 2,581,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,180,613 - 2,227,905 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,179,191 - 2,228,173 (-)NCBI
Celera162,089,133 - 2,134,528 (-)NCBICelera
Cytogenetic Map16p16NCBI
APPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38357,227,729 - 57,273,471 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl357,227,726 - 57,278,105 (+)EnsemblGRCh38hg38GRCh38
GRCh37357,261,757 - 57,307,499 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36357,236,805 - 57,282,539 (+)NCBINCBI36Build 36hg18NCBI36
Celera357,227,340 - 57,273,073 (+)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef357,310,967 - 57,356,664 (+)NCBIHuRef
CHM1_1357,211,913 - 57,257,646 (+)NCBICHM1_1
T2T-CHM13v2.0357,267,997 - 57,313,740 (+)NCBIT2T-CHM13v2.0
Appl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,640,943 - 26,692,567 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1426,640,945 - 26,693,189 (-)EnsemblGRCm39 Ensembl
GRCm381426,918,986 - 26,970,611 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,918,988 - 26,971,232 (-)EnsemblGRCm38mm10GRCm38
MGSCv371427,732,174 - 27,783,737 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361425,745,872 - 25,797,435 (-)NCBIMGSCv36mm8
Celera1423,158,676 - 23,210,368 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.09NCBI
Appl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,986,759 - 7,018,938 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,986,977 - 7,018,938 (+)NCBIChiLan1.0ChiLan1.0
APPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2257,196,344 - 57,241,732 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1357,201,137 - 57,246,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0357,161,299 - 57,206,672 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1358,370,424 - 58,415,258 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl358,370,430 - 58,415,258 (+)Ensemblpanpan1.1panPan2
APPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,123,577 - 33,166,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,130,723 - 33,166,792 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,051,161 - 33,094,218 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,395,990 - 33,439,031 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,402,695 - 33,439,040 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12032,845,010 - 32,887,864 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,203,498 - 33,246,471 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,374,797 - 33,418,067 (-)NCBIUU_Cfam_GSD_1.0
Appl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118174,441,878 - 174,476,919 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364737,579,780 - 7,611,923 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364737,580,495 - 7,647,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1339,089,077 - 39,129,781 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11339,089,157 - 39,124,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
APPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,546,694 - 18,591,239 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2218,546,751 - 18,589,552 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041148,278,109 - 148,324,433 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Appl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462482233,880 - 74,308 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462482231,175 - 74,252 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Appl1
151 total Variants

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:83
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000018413
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat

1 to 10 of 29 rows
RH129512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,118,669 - 2,118,856 (+)MAPPERmRatBN7.2
Rnor_6.0162,560,270 - 2,560,456NCBIRnor6.0
Rnor_5.0162,535,018 - 2,535,204UniSTSRnor5.0
RGSC_v3.4162,179,359 - 2,179,545UniSTSRGSC3.4
Celera162,086,549 - 2,086,735UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH139821  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2162,121,529 - 2,121,738 (+)MAPPERmRatBN7.2
Rnor_6.0162,563,130 - 2,563,338NCBIRnor6.0
Rnor_5.0162,537,878 - 2,538,086UniSTSRnor5.0
RGSC_v3.4162,182,219 - 2,182,427UniSTSRGSC3.4
Celera162,089,409 - 2,089,617UniSTS
RH 3.4 Map161.6UniSTS
Cytogenetic Map16p16UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000018413   ⟹   ENSRNOP00000018413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,121,255 - 2,166,692 (-)Ensembl
Rnor_6.0 Ensembl162,563,520 - 2,602,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094750   ⟹   ENSRNOP00000084269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl162,121,255 - 2,155,942 (-)Ensembl
RefSeq Acc Id: NM_001399084   ⟹   NP_001386013
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,125,234 - 2,173,396 (-)NCBI
mRatBN7.2162,118,503 - 2,166,667 (-)NCBI
RefSeq Acc Id: XM_039095136   ⟹   XP_038951064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8162,125,234 - 2,173,457 (-)NCBI
mRatBN7.2162,118,503 - 2,166,741 (-)NCBI
Protein RefSeqs NP_001386013 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951064 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018413.7
  ENSRNOP00000084269
  ENSRNOP00000084269.1
  ENSRNOP00000112063
Ensembl Acc Id: ENSRNOP00000018413   ⟸   ENSRNOT00000018413
RefSeq Acc Id: XP_038951064   ⟸   XM_039095136
- Peptide Label: isoform X1
- UniProtKB: A6KMK1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084269   ⟸   ENSRNOT00000094750
RefSeq Acc Id: NP_001386013   ⟸   NM_001399084
- UniProtKB: D3ZWA8 (UniProtKB/TrEMBL),   A6KMK1 (UniProtKB/TrEMBL)
PH   PID

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWA8-F1-model_v2 AlphaFold D3ZWA8 1-671 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 34 of 34 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-12247 BioCyc
Ensembl Genes ENSRNOG00000013574 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018413.7 UniProtKB/TrEMBL
  ENSRNOT00000094750 ENTREZGENE
  ENSRNOT00000094750.1 UniProtKB/TrEMBL
  ENSRNOT00000147099 ENTREZGENE
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro AH/BAR-dom UniProtKB/TrEMBL
  APPL1_BAR UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  DP13A/B UniProtKB/TrEMBL
  PH_DP13A/B UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  PTB_APPL UniProtKB/TrEMBL
  PTyr_interaction_dom UniProtKB/TrEMBL
NCBI Gene 290537 ENTREZGENE
PANTHER ADAPTOR PROTEIN, PHOSPHOTYROSINE INTERACTION, PH DOMAIN AND LEUCINE ZIPPER-CONTAINING 2 UniProtKB/TrEMBL
  DCC-INTERACTING PROTEIN 13-ALPHA UniProtKB/TrEMBL
Pfam BAR_3 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
PhenoGen Appl1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  PID UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013574 RatGTEx
SMART PTB UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
UniProt A0A8I5ZXF9_RAT UniProtKB/TrEMBL
  A6KMK1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWA8 ENTREZGENE, UniProtKB/TrEMBL
1 to 34 of 34 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Appl1  adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1  Appl1  adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1309388  similar to DIP13 alpha   RGD1309388_predicted  similar to DIP13 alpha (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1309388_predicted  similar to DIP13 alpha (predicted)  LOC290537_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290537_predicted  similar to DIP13 alpha (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL