Slc24a5 (solute carrier family 24 member 5) - Rat Genome Database

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Gene: Slc24a5 (solute carrier family 24 member 5) Rattus norvegicus
Analyze
Symbol: Slc24a5
Name: solute carrier family 24 member 5
RGD ID: 1310565
Description: Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion import; calcium ion transmembrane transport; and intracellular calcium ion homeostasis. Predicted to act upstream of or within monoatomic ion transmembrane transport and negative regulation of melanin biosynthetic process. Predicted to be located in membrane. Predicted to be active in trans-Golgi network. Human ortholog(s) of this gene implicated in oculocutaneous albinism type VI. Orthologous to human SLC24A5 (solute carrier family 24 member 5); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC311387; sodium/potassium/calcium exchanger 5; solute carrier family 24 (sodium/potassium/calcium exchanger), member 5; solute carrier family 24, member 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,772,804 - 132,792,342 (+)NCBIGRCr8
mRatBN7.23112,319,349 - 112,338,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,319,308 - 112,339,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,180,534 - 116,199,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,776,063 - 124,795,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,436,426 - 122,455,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03117,335,212 - 117,354,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,859,070 - 123,878,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,368,177 - 112,387,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13112,228,292 - 112,292,568 (+)NCBI
Celera3111,178,214 - 111,197,484 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5RatBloom syndrome  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Slc24a5Ratcolorectal cancer  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
Slc24a5Ratgenetic disease  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:23985994 more ...
Slc24a5RatMarfan syndrome  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Marfan syndromeClinVarPMID:16571647 more ...
Slc24a5Ratoculocutaneous albinism  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Oculocutaneous albinismClinVarPMID:16199547 more ...
Slc24a5Ratoculocutaneous albinism type VI  ISOSLC24A5 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Slc24a5RatSkin/Hair/Eye Pigmentation, Variation In, 4  ISOSLC24A5 (Homo sapiens)8554872ClinVar Annotator: match by term: Skin/hair/eye pigmentation more ...ClinVarPMID:16357253 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5RatSkin/Hair/Eye Pigmentation, Variation In, 4  ISOSLC24A5 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5Ratocular albinism 1  ISSSlc24a5 (Mus musculus)13592920OMIM:300500MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5Ratoculocutaneous albinism type VI  ISOSLC24A5 (Homo sapiens)7240710 OMIM 

1 to 20 of 32 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOSLC24A5 (Homo sapiens)64804642 more ...CTDPMID:19095052
Slc24a5Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc24a5 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC24A5 mRNACTDPMID:21354282
Slc24a5Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SLC24A5 mRNACTDPMID:33387578
Slc24a5Rat4,4'-diaminodiphenylmethane affects expressionISOSlc24a5 (Mus musculus)64804644 and 4'-diaminodiphenylmethane affects the expression of SLC24A5 mRNACTDPMID:18648102
Slc24a5Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SLC24A5 mRNACTDPMID:36041667
Slc24a5Ratamphetamine increases expressionEXP 6480464Amphetamine results in increased expression of SLC24A5 mRNACTDPMID:30779732
Slc24a5Ratarsane affects methylationISOSLC24A5 (Homo sapiens)6480464Arsenic affects the methylation of SLC24A5 geneCTDPMID:25304211
Slc24a5Ratarsenic atom affects methylationISOSLC24A5 (Homo sapiens)6480464Arsenic affects the methylation of SLC24A5 geneCTDPMID:25304211
Slc24a5Ratbenzo[a]pyrene increases expressionISOSlc24a5 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of SLC24A5 mRNACTDPMID:27195522
Slc24a5Ratbenzo[a]pyrene increases methylationISOSLC24A5 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of SLC24A5 promoterCTDPMID:27901495
Slc24a5Ratbis(2-ethylhexyl) phthalate increases expressionISOSlc24a5 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of SLC24A5 mRNACTDPMID:33754040
Slc24a5Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of SLC24A5 mRNACTDPMID:25181051
Slc24a5Ratbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SLC24A5 mRNACTDPMID:36041667
Slc24a5Ratbisphenol A decreases methylationISOSlc24a5 (Mus musculus)6480464bisphenol A results in decreased methylation of SLC24A5 promoterCTDPMID:27312807
Slc24a5Ratbisphenol F decreases expressionISOSlc24a5 (Mus musculus)6480464bisphenol F results in decreased expression of SLC24A5 mRNACTDPMID:38685157
Slc24a5Ratbisphenol F multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of SLC24A5 mRNACTDPMID:36041667
Slc24a5Ratcadmium atom multiple interactionsISOSLC24A5 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SLC24A5 mRNACTDPMID:35301059
Slc24a5Ratcadmium dichloride multiple interactionsISOSLC24A5 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of SLC24A5 mRNACTDPMID:35301059
Slc24a5RatCGP 52608 multiple interactionsISOSLC24A5 (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to SLC24A5 gene]CTDPMID:28238834
Slc24a5Ratcopper atom increases expressionEXP 6480464Copper results in increased expression of SLC24A5 mRNACTDPMID:30556269

1 to 20 of 32 rows

Biological Process
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5Ratcalcium ion import involved_inISOSLC24A5 (Homo sapiens)1624291 PMID:27093457RGDPMID:27093457
Slc24a5Ratcalcium ion import involved_inIEAUniProtKB:Q71RS6 and ensembl:ENSP000003415501600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Ratcalcium ion import involved_inIEAUniProtKB:Q8C261 and ensembl:ENSMUSP000000638871600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Ratcalcium ion import involved_inISOSlc24a5 (Mus musculus)1624291 PMID:27093457RGDPMID:27093457
Slc24a5Ratcalcium ion transmembrane transport involved_inIBAFB:FBgn0028704 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc24a5Ratcalcium ion transmembrane transport involved_inIEAARBA:ARBA000283591600115GO_REF:0000117UniProtGO_REF:0000117
Slc24a5Ratcalcium ion transport involved_inIEAUniProtKB-KW:KW-01091600115GO_REF:0000043UniProtGO_REF:0000043
Slc24a5Ratintracellular calcium ion homeostasis involved_inIBAMGI:1923626 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc24a5Ratmelanin biosynthetic process acts_upstream_ofISOSlc24a5 (Mus musculus)1624291 PMID:18166528RGDPMID:18166528
Slc24a5Ratmelanin biosynthetic process acts_upstream_ofIEAUniProtKB:Q8C261 and ensembl:ENSMUSP000000638871600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Ratmonoatomic ion transmembrane transport acts_upstream_of_or_withinISOSLC24A5 (Homo sapiens)1624291 PMID:18166528RGDPMID:18166528
Slc24a5Ratmonoatomic ion transmembrane transport acts_upstream_of_or_withinIEAUniProtKB:Q71RS6 and ensembl:ENSP000003415501600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Slc24a5Ratnegative regulation of melanin biosynthetic process acts_upstream_of_or_withinISOSlc24a5 (Mus musculus)1624291 PMID:18166528RGDPMID:18166528
Slc24a5Ratnegative regulation of melanin biosynthetic process acts_upstream_of_or_withinIEAUniProtKB:Q8C261 and ensembl:ENSMUSP000000638871600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Ratpotassium ion transmembrane transport involved_inIEAGO:00082731600115GO_REF:0000108GOCGO_REF:0000108
Slc24a5Ratsodium ion transmembrane transport involved_inIEAGO:00082731600115GO_REF:0000108GOCGO_REF:0000108
Slc24a5Rattransmembrane transport involved_inIEAInterPro:IPR0048371600115GO_REF:0000002InterProGO_REF:0000002
1 to 18 of 18 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Slc24a5Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc24a5Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Slc24a5Ratmembrane located_inIEAInterPro:IPR0048371600115GO_REF:0000002InterProGO_REF:0000002
Slc24a5Rattrans-Golgi network located_inISOSLC24A5 (Homo sapiens)1624291 PMID:18166528RGDPMID:18166528
Slc24a5Rattrans-Golgi network located_inIEAUniProtKB:Q71RS6 and ensembl:ENSP000003415501600115GO_REF:0000107EnsemblGO_REF:0000107
Slc24a5Rattrans-Golgi network is_active_inIBAPANTHER:PTN002586309 and UniProtKB:Q71RS61600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 9 of 9 rows

  
1 to 9 of 9 rows

RGD Manual Annotations


  

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:18166528  



Slc24a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,772,804 - 132,792,342 (+)NCBIGRCr8
mRatBN7.23112,319,349 - 112,338,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,319,308 - 112,339,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,180,534 - 116,199,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,776,063 - 124,795,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,436,426 - 122,455,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03117,335,212 - 117,354,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,859,070 - 123,878,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,368,177 - 112,387,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13112,228,292 - 112,292,568 (+)NCBI
Celera3111,178,214 - 111,197,484 (+)NCBICelera
Cytogenetic Map3q36NCBI
SLC24A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381548,120,990 - 48,142,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1548,120,990 - 48,142,672 (+)EnsemblGRCh38hg38GRCh38
GRCh371548,413,187 - 48,434,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,200,461 - 46,221,881 (+)NCBINCBI36Build 36hg18NCBI36
Build 341546,200,460 - 46,221,881NCBI
Celera1525,305,700 - 25,327,109 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1525,246,372 - 25,267,781 (+)NCBIHuRef
CHM1_11548,531,372 - 48,552,781 (+)NCBICHM1_1
T2T-CHM13v2.01545,929,094 - 45,950,765 (+)NCBIT2T-CHM13v2.0
Slc24a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392124,910,076 - 124,930,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2124,910,044 - 124,930,597 (+)EnsemblGRCm39 Ensembl
GRCm382125,068,127 - 125,088,677 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,068,124 - 125,088,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,893,863 - 124,914,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362124,759,568 - 124,780,118 (+)NCBIMGSCv36mm8
Celera2126,319,377 - 126,339,281 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.14NCBI
Slc24a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBIChiLan1.0ChiLan1.0
SLC24A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21637,375,304 - 37,382,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11541,556,643 - 41,564,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01527,069,937 - 27,091,619 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11545,394,090 - 45,415,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,394,090 - 45,415,823 (+)Ensemblpanpan1.1panPan2
SLC24A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,372,019 - 14,400,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3014,505,892 - 14,537,914 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBIUU_Cfam_GSD_1.0
Slc24a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,621,921 - 92,644,271 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647110,470,046 - 10,493,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647110,470,078 - 10,492,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC24A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,635,043 - 123,656,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,663,480 - 137,685,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC24A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,143,004 - 35,164,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2635,143,097 - 35,163,718 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048105,948,002 - 105,968,929 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc24a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473111,552,969 - 11,574,044 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473111,552,865 - 11,573,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc24a5
63 total Variants

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:41
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000043611
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 40 rows
BF388382  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83132,788,662 - 132,788,764 (+)Marker Load Pipeline
mRatBN7.23112,335,209 - 112,335,311 (+)MAPPERmRatBN7.2
Rnor_6.03117,350,461 - 117,350,562NCBIRnor6.0
Rnor_5.03123,874,319 - 123,874,420UniSTSRnor5.0
RGSC_v3.43112,383,426 - 112,383,527UniSTSRGSC3.4
Celera3111,193,463 - 111,193,564UniSTS
RH 3.4 Map3975.0UniSTS
Cytogenetic Map3q36UniSTS
AA893023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23112,338,802 - 112,338,967 (+)MAPPERmRatBN7.2
Rnor_6.03117,354,052 - 117,354,216NCBIRnor6.0
Rnor_5.03123,877,910 - 123,878,074UniSTSRnor5.0
RGSC_v3.43112,387,016 - 112,387,180UniSTSRGSC3.4
Celera3111,197,056 - 111,197,220UniSTS
RH 3.4 Map3981.5UniSTS
Cytogenetic Map3q36UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 45 95 91 90 59 25 59 6 213 93 75 44 57 31


RefSeq Transcripts NM_001415920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000043611   ⟹   ENSRNOP00000048644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3112,319,959 - 112,339,231 (+)Ensembl
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104396   ⟹   ENSRNOP00000083787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3112,319,329 - 112,338,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119825   ⟹   ENSRNOP00000090977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3112,319,308 - 112,334,437 (+)Ensembl
RefSeq Acc Id: NM_001415920   ⟹   NP_001402849
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83132,772,804 - 132,792,342 (+)NCBI
mRatBN7.23112,319,349 - 112,338,889 (+)NCBI
Protein RefSeqs NP_001402849 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL80055 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048644.3
  ENSRNOP00000083787
  ENSRNOP00000083787.1
  ENSRNOP00000090977.1
Ensembl Acc Id: ENSRNOP00000048644   ⟸   ENSRNOT00000043611
Ensembl Acc Id: ENSRNOP00000083787   ⟸   ENSRNOT00000104396
Ensembl Acc Id: ENSRNOP00000090977   ⟸   ENSRNOT00000119825
RefSeq Acc Id: NP_001402849   ⟸   NM_001415920
- UniProtKB: A0A8I6GB53 (UniProtKB/TrEMBL)
Sodium/calcium exchanger membrane region

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFG9-F1-model_v2 AlphaFold D3ZFG9 1-354 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48052 BioCyc
Ensembl Genes ENSRNOG00000005158 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043611.4 UniProtKB/TrEMBL
  ENSRNOT00000104396 ENTREZGENE
  ENSRNOT00000104396.1 UniProtKB/TrEMBL
  ENSRNOT00000119825.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1420.30 UniProtKB/TrEMBL
InterPro K-dep_Na/Ca-exchanger-like UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene 311387 ENTREZGENE
PANTHER PTHR10846 UniProtKB/TrEMBL
  PTHR10846:SF61 UniProtKB/TrEMBL
Pfam Na_Ca_ex UniProtKB/TrEMBL
PhenoGen Slc24a5 PhenoGen
RatGTEx ENSRNOG00000005158 RatGTEx
UniProt A0A8I6AB82_RAT UniProtKB/TrEMBL
  A0A8I6GB53 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFG9_RAT UniProtKB/TrEMBL
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Slc24a5  solute carrier family 24 member 5  Slc24a5  solute carrier family 24 (sodium/potassium/calcium exchanger), member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc24a5  solute carrier family 24 (sodium/potassium/calcium exchanger), member 5  Slc24a5  solute carrier family 24, member 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Slc24a5  solute carrier family 24, member 5   Slc24a5_predicted  solute carrier family 24, member 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Slc24a5_predicted  solute carrier family 24, member 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED