SLC24A5 (solute carrier family 24 member 5) - Rat Genome Database

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Gene: SLC24A5 (solute carrier family 24 member 5) Sus scrofa
Analyze
Symbol: SLC24A5
Name: solute carrier family 24 member 5
RGD ID: 14105864
Description: ENCODES a protein that exhibits antiporter activity (inferred); calcium channel activity (inferred); calcium ion transmembrane transporter activity (inferred); INVOLVED IN melanin biosynthetic process (ortholog); monoatomic ion transmembrane transport (ortholog); negative regulation of melanin biosynthetic process (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); trans-Golgi network (inferred); INTERACTS WITH deoxynivalenol; resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/potassium/calcium exchanger 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,635,043 - 123,656,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,663,480 - 137,685,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC24A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,635,043 - 123,656,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,663,480 - 137,685,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC24A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381548,120,990 - 48,142,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1548,120,990 - 48,142,672 (+)EnsemblGRCh38hg38GRCh38
GRCh371548,413,187 - 48,434,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,200,461 - 46,221,881 (+)NCBINCBI36Build 36hg18NCBI36
Build 341546,200,460 - 46,221,881NCBI
Celera1525,305,700 - 25,327,109 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1525,246,372 - 25,267,781 (+)NCBIHuRef
CHM1_11548,531,372 - 48,552,781 (+)NCBICHM1_1
T2T-CHM13v2.01545,929,094 - 45,950,765 (+)NCBIT2T-CHM13v2.0
Slc24a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392124,910,076 - 124,930,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2124,910,044 - 124,930,597 (+)EnsemblGRCm39 Ensembl
GRCm382125,068,127 - 125,088,677 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,068,124 - 125,088,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,893,863 - 124,914,413 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362124,759,568 - 124,780,118 (+)NCBIMGSCv36mm8
Celera2126,319,377 - 126,339,281 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.14NCBI
Slc24a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83132,772,804 - 132,792,342 (+)NCBIGRCr8
mRatBN7.23112,319,349 - 112,338,889 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3112,319,308 - 112,339,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,180,534 - 116,199,802 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03124,776,063 - 124,795,331 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03122,436,426 - 122,455,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03117,335,212 - 117,354,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,859,070 - 123,878,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,368,177 - 112,387,444 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13112,228,292 - 112,292,568 (+)NCBI
Celera3111,178,214 - 111,197,484 (+)NCBICelera
Cytogenetic Map3q36NCBI
Slc24a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBIChiLan1.0ChiLan1.0
SLC24A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21637,375,304 - 37,382,935 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11541,556,643 - 41,564,274 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01527,069,937 - 27,091,619 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11545,394,090 - 45,415,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,394,090 - 45,415,823 (+)Ensemblpanpan1.1panPan2
SLC24A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,372,019 - 14,400,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3014,505,892 - 14,537,914 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBIUU_Cfam_GSD_1.0
Slc24a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,621,921 - 92,644,271 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647110,470,046 - 10,493,104 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647110,470,078 - 10,492,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC24A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,143,004 - 35,164,134 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2635,143,097 - 35,163,718 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048105,948,002 - 105,968,929 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc24a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473111,552,969 - 11,574,044 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473111,552,865 - 11,573,987 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC24A5
389 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 14
Low 7 2 5 1 9 2 3 1
Below cutoff 2 2 1

Sequence


RefSeq Acc Id: ENSSSCT00000005148   ⟹   ENSSSCP00000005022
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,635,043 - 123,656,736 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088387   ⟹   ENSSSCP00000073324
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1123,635,043 - 123,656,714 (-)Ensembl
RefSeq Acc Id: XM_003121523   ⟹   XP_003121571
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003121571   ⟸   XM_003121523
- UniProtKB: F1SN62 (UniProtKB/TrEMBL),   A0A4X1SFS1 (UniProtKB/TrEMBL),   A0A8D0VKG1 (UniProtKB/TrEMBL),   A0A8D1EZS8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073324   ⟸   ENSSSCT00000088387
RefSeq Acc Id: ENSSSCP00000005022   ⟸   ENSSSCT00000005148

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004662 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005045022 UniProtKB/TrEMBL
  ENSSSCG00015065531 UniProtKB/TrEMBL
  ENSSSCG00025077033 UniProtKB/TrEMBL
  ENSSSCG00030012291 UniProtKB/TrEMBL
  ENSSSCG00035059569 UniProtKB/TrEMBL
  ENSSSCG00040050302 UniProtKB/TrEMBL
  ENSSSCG00045016169 UniProtKB/TrEMBL
  ENSSSCG00050052919 UniProtKB/TrEMBL
  ENSSSCG00055027766 UniProtKB/TrEMBL
  ENSSSCG00060005746 UniProtKB/TrEMBL
  ENSSSCG00065072359 UniProtKB/TrEMBL
  ENSSSCG00070000645 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005148 ENTREZGENE
  ENSSSCT00000005148.5 UniProtKB/TrEMBL
  ENSSSCT00000088387.2 UniProtKB/TrEMBL
  ENSSSCT00005072661.1 UniProtKB/TrEMBL
  ENSSSCT00005072673.1 UniProtKB/TrEMBL
  ENSSSCT00015087786.1 UniProtKB/TrEMBL
  ENSSSCT00015087896.1 UniProtKB/TrEMBL
  ENSSSCT00025106930.1 UniProtKB/TrEMBL
  ENSSSCT00025106936.1 UniProtKB/TrEMBL
  ENSSSCT00030016901.1 UniProtKB/TrEMBL
  ENSSSCT00035079833.1 UniProtKB/TrEMBL
  ENSSSCT00035079838.1 UniProtKB/TrEMBL
  ENSSSCT00040067918.1 UniProtKB/TrEMBL
  ENSSSCT00040067989.1 UniProtKB/TrEMBL
  ENSSSCT00045027526.1 UniProtKB/TrEMBL
  ENSSSCT00045027590.1 UniProtKB/TrEMBL
  ENSSSCT00050072048.1 UniProtKB/TrEMBL
  ENSSSCT00050072050.1 UniProtKB/TrEMBL
  ENSSSCT00055055026.1 UniProtKB/TrEMBL
  ENSSSCT00055055073.1 UniProtKB/TrEMBL
  ENSSSCT00060007287.1 UniProtKB/TrEMBL
  ENSSSCT00060007288.1 UniProtKB/TrEMBL
  ENSSSCT00065099436.1 UniProtKB/TrEMBL
  ENSSSCT00065099444.1 UniProtKB/TrEMBL
  ENSSSCT00070001212.1 UniProtKB/TrEMBL
  ENSSSCT00070001214.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1420.30 UniProtKB/TrEMBL
InterPro K/Na/Ca-exchanger UniProtKB/TrEMBL
  NaCa_Exmemb UniProtKB/TrEMBL
  NCX_ion-bd_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100511672 UniProtKB/TrEMBL
NCBI Gene SLC24A5 ENTREZGENE
PANTHER PTHR10846 UniProtKB/TrEMBL
  PTHR10846:SF61 UniProtKB/TrEMBL
Pfam Na_Ca_ex UniProtKB/TrEMBL
UniProt A0A4X1SFS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGD3_PIG UniProtKB/TrEMBL
  A0A8D0VKG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EZS8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MWN3_PIG UniProtKB/TrEMBL
  F1SN62 ENTREZGENE
UniProt Secondary A0A5G2RLQ6 UniProtKB/TrEMBL
  F1SN62 UniProtKB/TrEMBL
VGNC ID VGNC:92989 ENTREZGENE