Slc24a5 (solute carrier family 24 member 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc24a5 (solute carrier family 24 member 5) Chinchilla lanigera
Analyze
Symbol: Slc24a5
Name: solute carrier family 24 member 5
RGD ID: 8719963
Description: ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); ion transmembrane transport (ortholog); negative regulation of melanin biosynthetic process (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); genetic disease (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium/potassium/calcium exchanger 5; solute carrier family 24 (sodium/potassium/calcium exchanger), member 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Slc24a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBIChiLan1.0ChiLan1.0
SLC24A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1548,120,990 - 48,142,672 (+)EnsemblGRCh38hg38GRCh38
GRCh381548,120,990 - 48,142,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371548,413,187 - 48,434,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,200,461 - 46,221,881 (+)NCBINCBI36hg18NCBI36
Build 341546,200,460 - 46,221,881NCBI
Celera1525,305,700 - 25,327,109 (+)NCBI
Cytogenetic Map15q21.1NCBI
HuRef1525,246,372 - 25,267,781 (+)NCBIHuRef
CHM1_11548,531,372 - 48,552,781 (+)NCBICHM1_1
Slc24a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392124,910,047 - 124,930,597 (+)NCBIGRCm39mm39
GRCm39 Ensembl2124,910,044 - 124,930,597 (+)Ensembl
GRCm382125,068,127 - 125,088,677 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,068,124 - 125,088,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,893,863 - 124,914,413 (+)NCBIGRCm37mm9NCBIm37
MGSCv362124,759,568 - 124,780,118 (+)NCBImm8
Celera2126,319,377 - 126,339,281 (+)NCBICelera
Cytogenetic Map2F1NCBI
Slc24a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23112,319,305 - 112,339,231 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3112,319,308 - 112,339,231 (+)Ensembl
Rnor_6.03117,335,212 - 117,354,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,859,070 - 123,878,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,368,177 - 112,387,444 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13112,228,292 - 112,292,568 (+)NCBI
Celera3111,178,214 - 111,197,484 (+)NCBICelera
Cytogenetic Map3q36NCBI
SLC24A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11545,394,090 - 45,415,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,394,090 - 45,415,823 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01527,069,937 - 27,091,619 (+)NCBIMhudiblu_PPA_v0panPan3
SLC24A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,372,019 - 14,400,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBI
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBI
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBI
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBI
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBI
Slc24a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,621,921 - 92,644,271 (+)NCBI
SpeTri2.0NW_00493647110,470,078 - 10,492,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC24A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,635,039 - 123,656,737 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,663,480 - 137,685,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC24A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,143,004 - 35,164,134 (-)NCBI
ChlSab1.1 Ensembl2635,143,097 - 35,163,718 (-)Ensembl
Vero_WHO_p1.0NW_023666048105,948,002 - 105,968,929 (+)NCBI
Slc24a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473111,552,865 - 11,573,987 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013954   ⟹   ENSCLAP00000013798
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)Ensembl
RefSeq Acc Id: XM_005376708   ⟹   XP_005376765
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376765 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005376765   ⟸   XM_005376708
- Sequence:
RefSeq Acc Id: ENSCLAP00000013798   ⟸   ENSCLAT00000013954


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009536 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013798 ENTREZGENE
Ensembl Transcript ENSCLAT00000013954 ENTREZGENE
NCBI Gene Slc24a5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc24a5  solute carrier family 24 member 5    solute carrier family 24 (sodium/potassium/calcium exchanger), member 5  Symbol and/or name change 5135510 APPROVED