SLC24A5 (solute carrier family 24 member 5) - Rat Genome Database

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Gene: SLC24A5 (solute carrier family 24 member 5) Canis lupus familiaris
Analyze
Symbol: SLC24A5
Name: solute carrier family 24 member 5
RGD ID: 12198583
Description: ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); ion transmembrane transport (ortholog); negative regulation of melanin biosynthetic process (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); genetic disease (ortholog); FOUND IN trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sodium/potassium/calcium exchanger 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,372,019 - 14,400,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBI
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBI
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBI
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBI
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SLC24A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13014,372,019 - 14,400,262 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBI
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBI
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBI
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBI
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBI
SLC24A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1548,120,990 - 48,142,672 (+)EnsemblGRCh38hg38GRCh38
GRCh381548,120,990 - 48,142,672 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371548,413,187 - 48,434,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361546,200,461 - 46,221,881 (+)NCBINCBI36hg18NCBI36
Build 341546,200,460 - 46,221,881NCBI
Celera1525,305,700 - 25,327,109 (+)NCBI
Cytogenetic Map15q21.1NCBI
HuRef1525,246,372 - 25,267,781 (+)NCBIHuRef
CHM1_11548,531,372 - 48,552,781 (+)NCBICHM1_1
Slc24a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392124,910,047 - 124,930,597 (+)NCBIGRCm39mm39
GRCm39 Ensembl2124,910,044 - 124,930,597 (+)Ensembl
GRCm382125,068,127 - 125,088,677 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,068,124 - 125,088,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv372124,893,863 - 124,914,413 (+)NCBIGRCm37mm9NCBIm37
MGSCv362124,759,568 - 124,780,118 (+)NCBImm8
Celera2126,319,377 - 126,339,281 (+)NCBICelera
Cytogenetic Map2F1NCBI
Slc24a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23112,319,305 - 112,339,231 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3112,319,308 - 112,339,231 (+)Ensembl
Rnor_6.03117,335,212 - 117,354,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3117,335,212 - 117,354,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03123,859,070 - 123,878,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43112,368,177 - 112,387,444 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13112,228,292 - 112,292,568 (+)NCBI
Celera3111,178,214 - 111,197,484 (+)NCBICelera
Cytogenetic Map3q36NCBI
Slc24a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554095,747,624 - 5,768,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554095,747,624 - 5,768,122 (-)NCBIChiLan1.0ChiLan1.0
SLC24A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11545,394,090 - 45,415,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1545,394,090 - 45,415,823 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01527,069,937 - 27,091,619 (+)NCBIMhudiblu_PPA_v0panPan3
Slc24a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864092,621,921 - 92,644,271 (+)NCBI
SpeTri2.0NW_00493647110,470,078 - 10,492,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC24A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1123,635,039 - 123,656,737 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11123,635,077 - 123,657,205 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21137,663,480 - 137,685,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC24A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12635,143,004 - 35,164,134 (-)NCBI
ChlSab1.1 Ensembl2635,143,097 - 35,163,718 (-)Ensembl
Vero_WHO_p1.0NW_023666048105,948,002 - 105,968,929 (+)NCBI
Slc24a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473111,552,865 - 11,573,987 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium
Low
Below cutoff 5 5 19 3 6 3 5 2 12 8 10 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038441810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038461491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM235070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000022156   ⟹   ENSCAFP00000020571
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3014,372,145 - 14,400,152 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000074706   ⟹   ENSCAFP00000053781
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000081310   ⟹   ENSCAFP00000060020
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3014,371,778 - 14,373,216 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000089127   ⟹   ENSCAFP00000053425
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000090382   ⟹   ENSCAFP00000066432
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3014,371,778 - 14,400,152 (+)Ensembl
RefSeq Acc Id: XM_038441810   ⟹   XP_038297738
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03014,505,907 - 14,533,924 (+)NCBI
RefSeq Acc Id: XM_038461491   ⟹   XP_038317419
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3014,293,747 - 14,321,766 (+)NCBI
RefSeq Acc Id: XM_038517573   ⟹   XP_038373501
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13014,428,709 - 14,456,722 (+)NCBI
RefSeq Acc Id: XM_038581106   ⟹   XP_038437034
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03014,655,945 - 14,684,011 (+)NCBI
RefSeq Acc Id: XM_038645476   ⟹   XP_038501404
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03014,544,152 - 14,572,176 (+)NCBI
RefSeq Acc Id: XM_846756   ⟹   XP_851849
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13014,372,019 - 14,400,262 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038297738 (Get FASTA)   NCBI Sequence Viewer  
  XP_038317419 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038437034 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501404 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AIL02041 (Get FASTA)   NCBI Sequence Viewer  
  AIL02042 (Get FASTA)   NCBI Sequence Viewer  
  AIL02043 (Get FASTA)   NCBI Sequence Viewer  
  AIL02044 (Get FASTA)   NCBI Sequence Viewer  
  AIL02045 (Get FASTA)   NCBI Sequence Viewer  
  AIL02046 (Get FASTA)   NCBI Sequence Viewer  
  AIL02047 (Get FASTA)   NCBI Sequence Viewer  
  AIL02048 (Get FASTA)   NCBI Sequence Viewer  
  AIL02049 (Get FASTA)   NCBI Sequence Viewer  
  AIL02050 (Get FASTA)   NCBI Sequence Viewer  
  AIL02051 (Get FASTA)   NCBI Sequence Viewer  
  AIL02052 (Get FASTA)   NCBI Sequence Viewer  
  AIL02053 (Get FASTA)   NCBI Sequence Viewer  
  AIL02054 (Get FASTA)   NCBI Sequence Viewer  
  AIL02055 (Get FASTA)   NCBI Sequence Viewer  
  AIL02056 (Get FASTA)   NCBI Sequence Viewer  
  AIL02057 (Get FASTA)   NCBI Sequence Viewer  
  AIL02058 (Get FASTA)   NCBI Sequence Viewer  
  AIL02059 (Get FASTA)   NCBI Sequence Viewer  
  AIL02060 (Get FASTA)   NCBI Sequence Viewer  
  AIL02061 (Get FASTA)   NCBI Sequence Viewer  
  AIL02062 (Get FASTA)   NCBI Sequence Viewer  
  AIL02063 (Get FASTA)   NCBI Sequence Viewer  
  AIL02064 (Get FASTA)   NCBI Sequence Viewer  
  AIL02065 (Get FASTA)   NCBI Sequence Viewer  
  AIL02066 (Get FASTA)   NCBI Sequence Viewer  
  AIL02067 (Get FASTA)   NCBI Sequence Viewer  
  AIL02068 (Get FASTA)   NCBI Sequence Viewer  
  AIL02069 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_851849   ⟸   XM_846756
- Sequence:
RefSeq Acc Id: ENSCAFP00000053781   ⟸   ENSCAFT00000074706
RefSeq Acc Id: ENSCAFP00000053425   ⟸   ENSCAFT00000089127
RefSeq Acc Id: ENSCAFP00000066432   ⟸   ENSCAFT00000090382
RefSeq Acc Id: ENSCAFP00000020571   ⟸   ENSCAFT00000022156
RefSeq Acc Id: ENSCAFP00000060020   ⟸   ENSCAFT00000081310
RefSeq Acc Id: XP_038373501   ⟸   XM_038517573
RefSeq Acc Id: XP_038501404   ⟸   XM_038645476
RefSeq Acc Id: XP_038297738   ⟸   XM_038441810
RefSeq Acc Id: XP_038317419   ⟸   XM_038461491
RefSeq Acc Id: XP_038437034   ⟸   XM_038581106


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013965 Ensembl, ENTREZGENE
NCBI Gene SLC24A5 ENTREZGENE
VGNC ID VGNC:46289 ENTREZGENE