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ONTOLOGY REPORT - ANNOTATIONS

Term:stress granule assembly
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Accession:GO:0034063 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule.
Synonyms:exact_synonym: SG assembly


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stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07061614.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 4:136,953,750...136,954,480 JBrowse link
G Ang angiogenin involved_in ISO (PMID:20129916), (PMID:23047679) RGD PMID:20129916 PMID:23047679 NCBI chr15:24,312,711...24,323,361 JBrowse link
G Atxn2 ataxin 2 involved_in ISO
IBA		 (PMID:17392519)
GO_REF:0000033		 RGD
GO_Central		 PMID:17392519 GO_REF:0000033 NCBI chr12:34,754,132...34,851,175
Ensembl chr12:34,754,137...34,851,479 		JBrowse link
G Atxn2l ataxin 2-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:181,078,293...181,090,079
Ensembl chr 1:181,078,288...181,089,686 		JBrowse link
G Bicd1 BICD cargo adaptor 1 involved_in ISO (PMID:19825938) RGD PMID:19825938 NCBI chr 4:182,479,071...182,631,504
Ensembl chr 4:182,479,071...182,627,434 		JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:17967451)		 UniProt
RGD		 PMID:17967451 GO_REF:0000024 NCBI chr 7:9,533,857...9,538,899
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO
IEA
ISS		 (PMID:29395067)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:29395067 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787
Ensembl chr 2:190,554,980...190,582,784 		JBrowse link
G Dazap2 DAZ associated protein 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17984221)		 UniProt
RGD		 PMID:17984221 GO_REF:0000024 NCBI chr 7:131,714,749...131,720,266
Ensembl chr 7:131,714,745...131,720,265 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:21883093)
(PMID:31511697)		 RGD PMID:21883093 PMID:31511697 NCBI chr  X:9,479,532...9,493,169
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405
Ensembl chr 8:44,931,974...44,964,405 		JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19825938)		 Ensembl
RGD		 PMID:19825938 GO_REF:0000107 NCBI chr 6:129,615,208...129,680,888
Ensembl chr 6:129,609,397...129,680,883 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (PMID:27430620) RGD PMID:27430620 NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12417522)		 UniProt
RGD		 PMID:12417522 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO
IBA		 (PMID:20180778), (PMID:23163895), (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572), (PMID:34739333), (PMID:36279435), (PMID:36692217), (PMID:37379838)
GO_REF:0000033		 RGD
GO_Central		 PMID:20180778 PMID:23163895 PMID:27022092 PMID:32302570 PMID:32302571 More... GO_REF:0000033 NCBI chr10:39,586,864...39,620,268
Ensembl chr10:39,586,864...39,620,268 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in ISO
IBA		 (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572)
GO_REF:0000033		 RGD
GO_Central		 PMID:27022092 PMID:32302570 PMID:32302571 PMID:32302572 GO_REF:0000033 NCBI chr14:15,932,403...16,020,555
Ensembl chr14:15,987,417...16,020,548 		JBrowse link
G Grb7 growth factor receptor bound protein 7 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18273060)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18273060 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G LOC100364335 cold shock domain-containing protein E1-like involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr13:78,477,560...78,481,251 JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:86,964,800...87,009,325
Ensembl chr 1:86,964,828...87,009,276 		JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 involved_in ISO (PMID:24550447) RGD PMID:24550447 NCBI chr19:10,945,031...10,974,602
Ensembl chr19:10,946,018...10,975,119 		JBrowse link
G Prrc2c proline-rich coiled-coil 2C involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr13:75,003,995...75,073,701
Ensembl chr13:75,004,010...75,073,643 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 acts_upstream_of_or_within ISO (PMID:16775137) RGD PMID:16775137 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27037575)		 UniProt
Ensembl
RGD		 PMID:27037575 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rps23 ribosomal protein S23 involved_in ISO (PMID:28257692) RGD PMID:28257692 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein involved_in ISO (PMID:8576255) RGD PMID:8576255 NCBI chr 4:118,852,765...118,883,252
Ensembl chr 4:118,852,837...118,880,586 		JBrowse link
G Ubap2l ubiquitin associated protein 2-like involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr 2:175,438,703...175,494,085
Ensembl chr 2:175,438,703...175,493,998 		JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 3:168,024,660...168,040,172
Ensembl chr 3:168,024,663...168,040,172 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 2:98,350,304...98,384,608
Ensembl chr 2:98,350,588...98,384,606 		JBrowse link
negative regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Styxl1 serine/threonine/tyrosine interacting-like 1 involved_in ISO
IBA		 (PMID:20180778), (PMID:23163895)
GO_REF:0000033		 RGD
GO_Central		 PMID:20180778 PMID:23163895 GO_REF:0000033 NCBI chr12:20,907,410...20,940,232
Ensembl chr12:20,907,435...20,939,752 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in ISO
ISS
IEA		 (PMID:27022092), (PMID:32302570)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:27022092 PMID:32302570 GO_REF:0000024 GO_REF:0000107 NCBI chr19:47,972,858...48,014,900
Ensembl chr19:47,972,611...48,014,897 		JBrowse link
positive regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 IMP RGD PMID:30404558 RGD:401900732 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:30404558 RGD:401900732 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in ISO
ISS
IEA		 (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572), (PMID:36279435)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:27022092 PMID:32302570 PMID:32302571 PMID:32302572 PMID:36279435 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:90,152,305...90,230,447
Ensembl chr 3:90,153,620...90,230,502 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr10:39,586,864...39,620,268
Ensembl chr10:39,586,864...39,620,268 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr14:15,932,403...16,020,555
Ensembl chr14:15,987,417...16,020,548 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:30404558 RGD:401900732 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:30404558 RGD:401900732 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Ubap2l ubiquitin associated protein 2-like involved_in ISO (PMID:32302570) RGD PMID:32302570 NCBI chr 2:175,438,703...175,494,085
Ensembl chr 2:175,438,703...175,493,998 		JBrowse link
regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO UniProtKB:Q8BRK8 (PMID:27430620) RGD PMID:27430620 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q5EG47 (PMID:27430620)		 Ensembl
RGD		 PMID:27430620 GO_REF:0000107 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20075
    cellular process 19154
      cellular component organization or biogenesis 7178
        cellular component organization 6923
          organelle organization 3702
            organelle assembly 1092
              membraneless organelle assembly 454
                stress granule assembly 37
                  negative regulation of stress granule assembly 2
                  positive regulation of stress granule assembly 8
                  regulation of stress granule assembly + 12
paths to the root