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ONTOLOGY REPORT - ANNOTATIONS

Term:stress granule assembly
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Accession:GO:0034063 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule.
Synonyms:exact_synonym: SG assembly


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stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn2 ataxin 2 involved_in ISO
IBA		 (PMID:17392519)
GO_REF:0000033		 RGD
GO_Central		 PMID:17392519 GO_REF:0000033 NCBI chr12:34,754,132...34,851,175
Ensembl chr12:34,754,137...34,851,479 		JBrowse link
G Atxn2l ataxin 2-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:181,078,293...181,090,079
Ensembl chr 1:181,078,288...181,089,686 		JBrowse link
G Bicd1 BICD cargo adaptor 1 involved_in ISO (MGI:4397616|PMID:19825938) RGD PMID:19825938 MGI:4397616 NCBI chr 4:182,479,071...182,631,504
Ensembl chr 4:182,479,071...182,627,434 		JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISS
ISO		 GO_REF:0000024
(MGI:4418610|PMID:17967451)		 UniProt
RGD		 PMID:17967451 GO_REF:0000024 MGI:4418610 NCBI chr 7:9,533,857...9,538,899
Ensembl chr 7:9,424,178...9,538,818 		JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO
IEA
ISS		 (PMID:29395067)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:29395067 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787
Ensembl chr 2:190,554,980...190,582,784 		JBrowse link
G Dazap2 DAZ associated protein 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17984221)		 UniProt
RGD		 PMID:17984221 GO_REF:0000024 NCBI chr 7:131,714,749...131,720,266
Ensembl chr 7:131,714,745...131,720,265 		JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:21883093)
(MGI:6368386|PMID:31511697)		 RGD PMID:21883093 PMID:31511697 MGI:6368386 NCBI chr  X:9,479,532...9,493,169
Ensembl chr  X:9,479,532...9,493,168 		JBrowse link
G Ddx6 DEAD-box helicase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,931,127...44,967,773
Ensembl chr 8:44,931,974...44,964,405 		JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4397616|PMID:19825938)		 Ensembl
RGD		 PMID:19825938 GO_REF:0000107 MGI:4397616 NCBI chr 6:129,615,208...129,680,888
Ensembl chr 6:129,609,397...129,680,883 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr 6:97,672,829...97,697,499
Ensembl chr 6:97,672,766...97,706,225 		JBrowse link
G ENSRNOG00000066881 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr13:2,852,897...2,854,568 JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12417522)		 UniProt
RGD		 PMID:12417522 GO_REF:0000024 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO (PMID:20180778), (PMID:23163895), (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572), (PMID:34739333), (PMID:36279435), (PMID:36692217), (PMID:37379838) RGD PMID:20180778 PMID:23163895 PMID:27022092 PMID:32302570 PMID:32302571 More... NCBI chr10:39,586,864...39,620,268
Ensembl chr10:39,586,864...39,620,268 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in ISO (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572) RGD PMID:27022092 PMID:32302570 PMID:32302571 PMID:32302572 NCBI chr14:15,932,403...16,020,555
Ensembl chr14:15,987,417...16,020,548 		JBrowse link
G Grb7 growth factor receptor bound protein 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:5284766|PMID:18273060)		 UniProt
Ensembl
RGD		 PMID:18273060 GO_REF:0000024 GO_REF:0000107 MGI:5284766 NCBI chr10:83,443,387...83,453,057
Ensembl chr10:83,444,004...83,453,052 		JBrowse link
G LOC100364335 cold shock domain-containing protein E1-like involved_in ISS
IEA		 GO_REF:0000024
GO_REF:0000107		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:78,477,560...78,481,251 JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:86,964,800...87,009,325
Ensembl chr 1:86,964,828...87,009,276 		JBrowse link
G Ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 involved_in ISO (PMID:24550447) RGD PMID:24550447 NCBI chr19:10,945,031...10,974,602
Ensembl chr19:10,946,018...10,975,119 		JBrowse link
G Prrc2c proline-rich coiled-coil 2C involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr13:75,003,995...75,073,701
Ensembl chr13:75,004,010...75,073,643 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 acts_upstream_of_or_within ISO (PMID:16775137) RGD PMID:16775137 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27037575)		 UniProt
Ensembl
RGD		 PMID:27037575 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rps23 ribosomal protein S23 involved_in ISO
IEA		 (PMID:28257692)
GO_REF:0000107		 RGD
Ensembl		 PMID:28257692 GO_REF:0000107 NCBI chr 2:22,079,339...22,080,909
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein involved_in ISO (PMID:8576255) RGD PMID:8576255 NCBI chr 4:118,852,765...118,883,252
Ensembl chr 4:118,852,837...118,880,586 		JBrowse link
G Ubap2l ubiquitin associated protein 2-like involved_in ISO (PMID:29395067) RGD PMID:29395067 NCBI chr 2:175,438,703...175,494,085
Ensembl chr 2:175,438,703...175,493,998 		JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 3:168,024,660...168,040,172
Ensembl chr 3:168,024,663...168,040,172 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 5:144,381,426...144,407,126
Ensembl chr 5:144,381,431...144,408,144 		JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in ISO (PMID:32451507) RGD PMID:32451507 NCBI chr 2:98,350,304...98,384,608
Ensembl chr 2:98,350,588...98,384,606 		JBrowse link
negative regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Styxl1 serine/threonine/tyrosine interacting-like 1 involved_in ISO
IBA		 (PMID:20180778), (PMID:23163895)
GO_REF:0000033		 RGD
GO_Central		 PMID:20180778 PMID:23163895 GO_REF:0000033 NCBI chr12:20,907,410...20,940,232
Ensembl chr12:20,907,435...20,939,752 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in ISO
ISS
IEA		 (PMID:27022092), (PMID:32302570)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:27022092 PMID:32302570 GO_REF:0000024 GO_REF:0000107 NCBI chr19:47,972,858...48,014,900
Ensembl chr19:47,972,611...48,014,897 		JBrowse link
positive regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 IMP RGD PMID:30404558 RGD:401900732 NCBI chr20:47,798,217...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:30404558 RGD:401900732 NCBI chr10:86,231,387...86,246,742
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in ISO
ISS
IEA		 (PMID:27022092), (PMID:32302570), (PMID:32302571), (PMID:32302572), (PMID:36279435)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:27022092 PMID:32302570 PMID:32302571 PMID:32302572 PMID:36279435 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:90,152,305...90,230,447
Ensembl chr 3:90,153,620...90,230,502 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr10:39,586,864...39,620,268
Ensembl chr10:39,586,864...39,620,268 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in ISO (PMID:23279204) RGD PMID:23279204 NCBI chr14:15,932,403...16,020,555
Ensembl chr14:15,987,417...16,020,548 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IMP RGD PMID:30404558 RGD:401900732 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:30404558 RGD:401900732 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Ubap2l ubiquitin associated protein 2-like involved_in ISO (PMID:32302570) RGD PMID:32302570 NCBI chr 2:175,438,703...175,494,085
Ensembl chr 2:175,438,703...175,493,998 		JBrowse link
regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO UniProtKB:Q8BRK8 (MGI:6148443|PMID:27430620) RGD PMID:27430620 MGI:6148443 NCBI chr 2:54,240,298...54,275,978
Ensembl chr 2:54,240,137...54,275,978 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q5EG47 (MGI:6148443|PMID:27430620)		 Ensembl
RGD		 PMID:27430620 GO_REF:0000107 MGI:6148443 NCBI chr 5:119,807,992...119,879,987
Ensembl chr 5:119,813,226...119,879,543 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cellular component organization or biogenesis 7217
        cellular component organization 6909
          organelle organization 3831
            organelle assembly 1072
              non-membrane-bounded organelle assembly 439
                stress granule assembly 36
                  negative regulation of stress granule assembly 2
                  positive regulation of stress granule assembly 8
                  regulation of stress granule assembly + 12
paths to the root