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ONTOLOGY REPORT - ANNOTATIONS

Term:endosome organization
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Accession:GO:0007032 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes.
Synonyms:exact_synonym: endosome organisation
 related_synonym: endosome organization and biogenesis


show annotations for term's descendants           Sort by:
endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in ISO
IEA
ISS		 (PMID:18799622)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:18799622 GO_REF:0000024 GO_REF:0000107 NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663 		JBrowse link
G Anxa8 annexin A8 involved_in ISO
IBA		 (PMID:18923148)
GO_REF:0000033		 RGD
GO_Central		 PMID:18923148 GO_REF:0000033 NCBI chr16:9,397,144...9,412,072
Ensembl chr16:9,397,113...9,412,043 		JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 involved_in ISO
ISS		 (PMID:20360857)
GO_REF:0000024		 RGD
UniProt		 PMID:20360857 GO_REF:0000024 NCBI chr 3:155,547,504...155,633,652
Ensembl chr 3:155,547,538...155,630,856 		JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:6458917 (PMID:26720614)		 Ensembl
RGD		 PMID:26720614 GO_REF:0000107 NCBI chr19:24,011,897...24,026,937
Ensembl chr19:24,011,938...24,026,936 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:16041373) RGD PMID:16041373 NCBI chr11:3,337,478...3,364,015
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in ISO (PMID:24643499) RGD PMID:24643499 NCBI chr 8:104,767,785...104,877,317
Ensembl chr 8:104,767,788...104,877,317 		JBrowse link
G Dnm1 dynamin 1 involved_in ISO
IEA		 (PMID:19706678)
GO_REF:0000107		 RGD
Ensembl		 PMID:19706678 GO_REF:0000107 NCBI chr 3:15,604,782...15,648,654
Ensembl chr 3:15,604,784...15,648,538 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:52,855,010...52,857,499
Ensembl chr19:52,852,578...52,857,491 		JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in ISO
IBA
IEA
ISS		 (PMID:18799622)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:18799622 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408 		JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787 		JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181 		JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:4887551|PMID:19177150)		 UniProt
RGD		 PMID:19177150 GO_REF:0000024 MGI:4887551 NCBI chr 1:156,272,116...156,277,687
Ensembl chr 1:156,272,064...156,291,179 		JBrowse link
G Lamtor1l1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 like 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:34,637,460...34,638,509
Ensembl chr  X:34,637,459...34,638,516 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO
IEA
ISS		 (PMID:21224396)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21224396 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,434,525...65,477,386
Ensembl chr 7:65,434,394...65,477,383 		JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 involved_in ISO
IBA		 (PMID:21233288)
GO_REF:0000033		 RGD
GO_Central		 PMID:21233288 GO_REF:0000033 NCBI chr12:34,711,831...34,717,601
Ensembl chr12:34,711,810...34,717,081 		JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 involved_in ISO
IBA		 (PMID:21233288)
GO_REF:0000033		 RGD
GO_Central		 PMID:21233288 GO_REF:0000033 NCBI chr 7:113,855,437...113,861,910
Ensembl chr 7:113,857,249...113,861,871 		JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:240,902,804...240,929,234
Ensembl chr 1:240,902,855...240,929,337 		JBrowse link
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:58,221,790...58,248,716
Ensembl chr14:58,220,437...58,248,673 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP RGD PMID:12453151 RGD:2303129 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Plekha3 pleckstrin homology domain containing A3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:61,623,434...61,644,649
Ensembl chr 3:61,623,434...61,645,166 		JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in ISO
IBA		 (PMID:22115783)
GO_REF:0000033		 RGD
GO_Central		 PMID:22115783 GO_REF:0000033 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820 		JBrowse link
G Plekhf2 pleckstrin homology and FYVE domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,091,077...24,106,758
Ensembl chr 5:24,090,688...24,106,601 		JBrowse link
G Rab22a RAB22A, member RAS oncogene family involved_in ISO (PMID:11870209) RGD PMID:11870209 NCBI chr 3:162,459,727...162,506,129
Ensembl chr 3:162,459,726...162,506,137 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873 		JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 involved_in IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205 		JBrowse link
G Rab5b RAB5B, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr 7:1,109,449...1,128,348
Ensembl chr 7:1,109,454...1,128,268 		JBrowse link
G Rab5c RAB5C, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) RGD PMID:7789520 NCBI chr10:85,642,553...85,666,142
Ensembl chr10:85,642,809...85,666,103 		JBrowse link
G Rnf26 ring finger protein 26 involved_in ISO (PMID:27368102) RGD PMID:27368102 NCBI chr 8:44,454,551...44,456,745
Ensembl chr 8:44,454,292...44,457,331 		JBrowse link
G Snx10 sorting nexin 10 involved_in ISO (PMID:17012226) RGD PMID:17012226 NCBI chr 4:80,612,648...80,677,005
Ensembl chr 4:80,612,669...80,676,996 		JBrowse link
G Snx33 sorting nexin 33 involved_in ISO (PMID:21048941) RGD PMID:21048941 NCBI chr 8:57,315,861...57,328,522
Ensembl chr 8:57,317,161...57,327,538 		JBrowse link
G Sqstm1 sequestosome 1 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:27368102)		 UniProt
GO_Central
RGD		 PMID:27368102 GO_REF:0000024 GO_REF:0000033 NCBI chr10:34,525,517...34,536,670
Ensembl chr10:34,525,519...34,536,673 		JBrowse link
G Stx6 syntaxin 6 acts_upstream_of_or_within ISO (PMID:14668490) RGD PMID:14668490 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576 		JBrowse link
G Tmem127 transmembrane protein 127 acts_upstream_of_or_within ISO MGI:5581337 (PMID:24334765) RGD PMID:24334765 NCBI chr 3:114,466,095...114,478,894
Ensembl chr 3:114,466,171...114,477,519 		JBrowse link
G Ubr4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:151,635,825...151,743,931
Ensembl chr 5:151,635,868...151,743,784 		JBrowse link
G Usp50 ubiquitin specific peptidase 50 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:114,012,104...114,035,468
Ensembl chr 3:114,011,702...114,035,476 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in ISO
IBA		 (MGI:4821940|PMID:16771824)
GO_REF:0000033		 RGD
GO_Central		 PMID:16771824 GO_REF:0000033 MGI:4821940 NCBI chr 3:113,962,136...114,009,683
Ensembl chr 3:113,962,164...114,009,666 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,684,129...44,698,568
Ensembl chr 8:44,684,127...44,698,568 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:18799622)
(PMID:14668490)
GO_REF:0000033		 RGD
GO_Central		 PMID:14668490 PMID:18799622 GO_REF:0000033 NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated involved_in ISO (PMID:23918659) RGD PMID:23918659 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A acts_upstream_of_or_within ISO MGI:1100499 (PMID:26720614) RGD PMID:26720614 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B acts_upstream_of_or_within ISO MGI:1890520 (PMID:10637304), (PMID:26720614) RGD PMID:10637304 PMID:26720614 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:20175130)
(PMID:26965651)		 RGD PMID:20175130 PMID:26965651 NCBI chr 9:105,722,779...105,830,836
Ensembl chr 9:105,722,899...105,733,009 		JBrowse link
G Washc4 WASH complex subunit 4 involved_in ISO
IBA		 (PMID:23676666)
GO_REF:0000033		 RGD
GO_Central		 PMID:23676666 GO_REF:0000033 NCBI chr 7:20,187,905...20,240,228
Ensembl chr 7:20,187,922...20,240,226 		JBrowse link
G Washc5 WASH complex subunit 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:90,884,192...90,936,096
Ensembl chr 7:90,884,197...90,936,103 		JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 acts_upstream_of_or_within ISO MGI:3528447 (PMID:16107722) RGD PMID:16107722 NCBI chr 1:152,046,515...152,056,675
Ensembl chr 1:152,046,517...152,056,725 		JBrowse link
G Faslg Fas ligand IDA RGD PMID:18045865 RGD:2315735 NCBI chr13:74,151,519...74,172,760
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Rnasek ribonuclease K involved_in ISO UniProtKB:Q15904 (PMID:26212330) RGD PMID:26212330 NCBI chr10:54,954,904...54,956,622
Ensembl chr10:54,951,991...54,956,601 		JBrowse link
G Tmem9 transmembrane protein 9 involved_in ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:47,458,486...47,475,832
Ensembl chr13:47,458,498...47,475,832 		JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin 1C involved_in ISO (PMID:30220460) RGD PMID:30220460 NCBI chr12:42,713,024...42,785,179
Ensembl chr12:42,712,991...42,785,179 		JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in ISO
IBA		 (PMID:30220460)
GO_REF:0000033		 RGD
GO_Central		 PMID:30220460 GO_REF:0000033 NCBI chr 4:149,069,252...149,239,585
Ensembl chr 4:149,069,260...149,239,620 		JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:17959629) RGD PMID:17959629 NCBI chr10:60,355,276...60,358,434
Ensembl chr10:60,355,278...60,358,781 		JBrowse link
G Snx3 sorting nexin 3 involved_in ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:45,992,446...46,025,361
Ensembl chr20:45,992,720...46,025,379 		JBrowse link
multivesicular body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab11a RAB11a, member RAS oncogene family involved_in ISO (PMID:15634213) RGD PMID:15634213 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA
ISO		 GO_REF:0000107
(MGI:5700294|PMID:21238931)		 Ensembl
RGD		 PMID:21238931 GO_REF:0000107 MGI:5700294 NCBI chr19:34,934,999...34,948,888
Ensembl chr19:34,934,961...34,948,887 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:5700294 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229 		JBrowse link
multivesicular body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab27a RAB27A, member RAS oncogene family involved_in ISO (PMID:23092844) RGD PMID:23092844 NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829 		JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 (PMID:26911690)
GO_REF:0000107		 RGD
Ensembl		 PMID:26911690 GO_REF:0000107 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synj1 synaptojanin 1 involved_in ISO
IEA		 (PMID:22511594)
GO_REF:0000107		 RGD
Ensembl		 PMID:22511594 GO_REF:0000107 NCBI chr11:30,192,629...30,269,447
Ensembl chr11:30,192,629...30,269,220 		JBrowse link
regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:25588840) RGD PMID:25588840 NCBI chr19:13,405,482...13,440,384
Ensembl chr19:13,405,501...13,440,384 		JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in IDA
IMP		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377 		JBrowse link
G Stx6 syntaxin 6 involved_in IDA
IMP		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576 		JBrowse link
G Stx7 syntaxin 7 involved_in ISO (PMID:34408265) RGD PMID:34408265 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
IEP
IMP		 PMID:17004320
PMID:26607000		 SynGO PMID:17004320 PMID:26607000 PMID:17004320 PMID:26607000 PMID:26607000 RGD:12050136, RGD:11058152, RGD:12050136, RGD:11058152, RGD:11058152 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IMP
IDA		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19694
    cellular process 18196
      cellular component organization or biogenesis 6956
        cellular component organization 6692
          endomembrane system organization 560
            endosome organization 62
              endosomal lumen acidification 4
              endosome membrane tubulation 2
              intralumenal vesicle formation + 3
              multivesicular body organization + 4
              negative regulation of endosome organization + 1
              positive regulation of endosome organization + 1
              regulation of endosome organization + 3
              synaptic vesicle to endosome fusion + 5
Path 2
Term Annotations click to browse term
  biological_process 19694
    cellular process 18196
      cellular component organization or biogenesis 6956
        cellular component organization 6692
          organelle organization 3681
            vesicle organization 349
              endosome organization 62
                endosomal lumen acidification 4
                endosome membrane tubulation 2
                intralumenal vesicle formation + 3
                multivesicular body organization + 4
                negative regulation of endosome organization + 1
                positive regulation of endosome organization + 1
                regulation of endosome organization + 3
                synaptic vesicle to endosome fusion + 5
paths to the root