Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle targeting
go back to main search page
Accession:GO:0006903 term browser browse the term
Definition:The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo.


show annotations for term's descendants           Sort by:
vesicle targeting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (PMID:20592197) RGD PMID:20592197 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 IDA RGD PMID:8626580 RGD:724726 NCBI chr 3:126,989,800...127,025,071
Ensembl chr 3:106,536,004...106,571,251 		JBrowse link
G Clasp1 cytoplasmic linker associated protein 1 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr13:29,493,554...29,715,151
Ensembl chr13:29,493,596...29,715,146 		JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 involved_in ISO (PMID:24859005) RGD PMID:24859005 NCBI chr 8:122,555,532...122,736,934
Ensembl chr 8:113,677,284...113,858,731 		JBrowse link
G Exoc4 exocyst complex component 4 involved_in TAS PMID:12738960 UniProt PMID:12738960 RGD:8554028 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Map4k2 mitogen activated protein kinase kinase kinase kinase 2 involved_in ISO (PMID:8643544) RGD PMID:8643544 NCBI chr 1:213,074,360...213,090,042
Ensembl chr 1:203,645,153...203,660,331 		JBrowse link
G Myh9 myosin, heavy chain 9 involved_in ISO (PMID:18504258) RGD PMID:18504258 NCBI chr 7:111,224,291...111,304,963
Ensembl chr 7:109,343,706...109,424,457 		JBrowse link
G Stx2 syntaxin 2 TAS RGD PMID:10564647 PMID:8938452 RGD:1298910, RGD:728629 NCBI chr12:33,315,447...33,350,788
Ensembl chr12:27,689,819...27,714,751 		JBrowse link
G Tmed10 transmembrane p24 trafficking protein 10 involved_in NAS PMID:8663407 RGD
HGNC-UCL		 PMID:8663407 PMID:8663407 RGD:68840, RGD:68840 NCBI chr 6:110,722,887...110,757,743
Ensembl chr 6:104,991,838...105,026,753 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 involved_in NAS PMID:8663407 HGNC-UCL PMID:8663407 RGD:68840 NCBI chr12:37,713,522...37,722,606
Ensembl chr12:32,052,543...32,071,903 		JBrowse link
G Ykt6 YKT6 v-SNARE homolog involved_in ISS
ISO		 PMID:9211930
(PMID:9211930)		 RGD PMID:9211930 PMID:9211930 RGD:8553660 NCBI chr14:85,041,393...85,057,347
Ensembl chr14:80,832,187...80,843,385 		JBrowse link
COPI coating of Golgi vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgap2 ARF GTPase activating protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:77,236,305...77,248,445
Ensembl chr 3:77,236,322...77,248,455 		JBrowse link
G Arfgap3 ARF GTPase activating protein 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:116,312,996...116,359,300
Ensembl chr 7:114,432,873...114,479,208 		JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:12047556), (PMID:17956946) RGD PMID:12047556 PMID:17956946 NCBI chr 1:254,959,784...255,088,479
Ensembl chr 1:245,018,568...245,147,042 		JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 involved_in ISO
IBA
IEA		 (PMID:18287528)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18287528 GO_REF:0000033 GO_REF:0000107 NCBI chr17:9,034,797...9,039,311
Ensembl chr17:9,029,646...9,034,176 		JBrowse link
COPI-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 involved_in ISO
IEA
ISS		 (PMID:10052452)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:10052452 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:110,722,887...110,757,743
Ensembl chr 6:104,991,838...105,026,753 		JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 involved_in ISO
IEA
ISS		 (PMID:22358839)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:22358839 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:89,040,987...89,118,775
Ensembl chr 9:81,592,641...81,670,462 		JBrowse link
G Klhl12 kelch-like family member 12 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000024
(PMID:22358839), (PMID:27716508)		 Ensembl
GO_Central
UniProt
RGD		 PMID:22358839 PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:48,451,920...48,485,638
Ensembl chr13:45,899,928...45,933,643 		JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO
ISS		 (PMID:27716508)
GO_REF:0000024		 RGD
UniProt		 PMID:27716508 GO_REF:0000024 NCBI chr 1:28,966,518...28,982,188
Ensembl chr 1:28,966,518...28,982,189 		JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISO
IBA
IEA
ISS		 (PMID:27716508)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:27716508 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:142,451,791...142,475,061
Ensembl chr 5:142,451,778...142,475,067 		JBrowse link
G Preb prolactin regulatory element binding involved_in IDA PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr 6:31,138,757...31,142,544
Ensembl chr 6:25,418,776...25,422,590 		JBrowse link
G Sar1a secretion associated, Ras related GTPase 1A involved_in ISO (PMID:23433038), (PMID:32358066) RGD PMID:23433038 PMID:32358066 NCBI chr20:30,166,310...30,178,718
Ensembl chr20:29,623,553...29,635,935 		JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23433038), (PMID:32358066)		 UniProt
RGD		 PMID:23433038 PMID:32358066 GO_REF:0000024 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066 		JBrowse link
G Tfg trafficking from ER to golgi regulator involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:43,885,542...43,911,976
Ensembl chr11:43,885,661...43,911,976 		JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 involved_in ISO
IEA
ISS		 (PMID:24618899)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24618899 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:109,575,619...109,595,339
Ensembl chr 7:107,694,964...107,714,645 		JBrowse link
G Preb prolactin regulatory element binding involved_in IEA
IBA
ISO		 GO_REF:0000104
GO_REF:0000033
(PMID:32358066)		 UniProt
GO_Central
RGD		 PMID:32358066 GO_REF:0000033 GO_REF:0000104 NCBI chr 6:31,138,757...31,142,544
Ensembl chr 6:25,418,776...25,422,590 		JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:36,525,365...36,555,009
Ensembl chr10:36,024,382...36,054,066 		JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:17005010) RGD PMID:17005010 NCBI chr 3:29,627,779...29,662,925
Ensembl chr 3:9,229,687...9,264,273 		JBrowse link
synaptic vesicle targeting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:10892652)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:10892652 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) involved_in NAS PMID:10707984 UniProt PMID:10707984 RGD:69383 NCBI chr 4:20,646,604...21,005,171
Ensembl chr 4:19,695,315...20,049,885 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:12805290) RGD PMID:12805290 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Scrib scribble planar cell polarity protein involved_in ISO (PMID:19458197) RGD PMID:19458197 NCBI chr 7:109,640,034...109,663,354
Ensembl chr 7:107,759,343...107,782,331 		JBrowse link
vesicle targeting, to, from or within Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmed10 transmembrane p24 trafficking protein 10 involved_in IEP
ISO		 PMID:17101722
(PMID:17101722)		 RGD PMID:17101722 PMID:17101722 RGD:2317246 NCBI chr 6:110,722,887...110,757,743
Ensembl chr 6:104,991,838...105,026,753 		JBrowse link
vesicle targeting, trans-Golgi to endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1ar adaptor-related protein complex 1 associated regulatory protein involved_in ISO
IBA		 (PMID:19706427)
GO_REF:0000033		 RGD
GO_Central		 PMID:19706427 GO_REF:0000033 NCBI chr 2:216,276,631...216,309,020
Ensembl chr 2:216,276,631...216,309,013 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:15020712) RGD PMID:15020712 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
vesicle targeting, trans-Golgi to periciliary membrane compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep19 centrosomal protein 19 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:28659385)		 UniProt
GO_Central
Ensembl
RGD		 PMID:28659385 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:82,182,868...82,192,134
Ensembl chr11:68,677,871...68,687,022 		JBrowse link
vesicle tethering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:21037080) RGD PMID:21037080 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
vesicle tethering involved in exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Exoc6 exocyst complex component 6 involved_in IEA GO_REF:0000104
GO_REF:0000002		 UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr 1:235,314,612...235,457,824
Ensembl chr 1:235,300,369...235,457,015 		JBrowse link
G Exoc6b exocyst complex component 6B involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr 4:117,094,741...117,550,221
Ensembl chr 4:117,094,741...117,550,180 		JBrowse link
vesicle tethering to endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stard3 StAR-related lipid transfer domain containing 3 involved_in ISO
IBA		 (PMID:24105263), (PMID:28377464)
GO_REF:0000033		 RGD
GO_Central		 PMID:24105263 PMID:28377464 GO_REF:0000033 NCBI chr10:83,853,622...83,876,162
Ensembl chr10:83,357,359...83,550,976 		JBrowse link
G Stard3nl STARD3 N-terminal like involved_in ISO
IBA		 (PMID:24105263)
GO_REF:0000033		 RGD
GO_Central		 PMID:24105263 GO_REF:0000033 NCBI chr17:45,583,278...45,617,226
Ensembl chr17:45,583,266...45,617,226 		JBrowse link
vesicle tethering to Golgi term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C10h17orf75 similar to human chromosome 17 open reading frame 75 involved_in ISO
IBA		 (PMID:29426865)
GO_REF:0000033		 RGD
GO_Central		 PMID:29426865 GO_REF:0000033 NCBI chr10:65,360,924...65,373,864
Ensembl chr10:65,360,924...65,373,864 		JBrowse link
G Fam91a1 family with sequence similarity 91, member A1 involved_in ISO
IBA		 (PMID:29426865)
GO_REF:0000033		 RGD
GO_Central		 PMID:29426865 GO_REF:0000033 NCBI chr 7:89,969,558...90,007,546
Ensembl chr 7:89,969,605...90,007,556 		JBrowse link
G Tbc1d23 TBC1 domain family, member 23 involved_in ISO
IBA		 (PMID:29426865)
GO_REF:0000033		 RGD
GO_Central		 PMID:29426865 GO_REF:0000033 NCBI chr11:56,772,476...56,830,625
Ensembl chr11:43,303,355...43,361,503 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 involved_in ISO (PMID:25473115) RGD PMID:25473115 NCBI chr 6:120,995,242...121,067,693
Ensembl chr 6:120,998,733...121,067,781 		JBrowse link
G Wdr11 WD repeat domain 11 involved_in ISO (PMID:29426865) RGD PMID:29426865 NCBI chr 1:184,165,260...184,210,834
Ensembl chr 1:184,165,571...184,210,846 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      vesicle targeting 42
        contractile vacuole tethering involved in discharge 0
        synaptic vesicle targeting 4
        vesicle targeting to fusome 0
        vesicle targeting, plasma membrane to endosome + 0
        vesicle targeting, to, from or within Golgi + 18
        vesicle tethering + 11
Path 2
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      establishment of localization 5046
        establishment of localization in cell 2139
          establishment of vesicle localization 188
            vesicle targeting 42
              contractile vacuole tethering involved in discharge 0
              synaptic vesicle targeting 4
              vesicle targeting to fusome 0
              vesicle targeting, plasma membrane to endosome + 0
              vesicle targeting, to, from or within Golgi + 18
              vesicle tethering + 11
paths to the root