Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:copper ion binding
go back to main search page
Accession:GO:0005507 term browser browse the term
Definition:Binding to a copper (Cu) ion.
Synonyms:exact_synonym: copper binding
 broad_synonym: copper/cadmium binding


show annotations for term's descendants           Sort by:
copper ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACR acrosin enables NAS (PMID:6815104) UniProt PMID:6815104 NCBI chr22:50,738,204...50,745,339
Ensembl chr22:50,738,196...50,745,339 		JBrowse link
G ADNP activity dependent neuroprotector homeobox enables ISO
IEA		 RGD
Ensembl		 PMID:14706557 GO_REF:0000107 RGD:2312790 NCBI chr20:50,888,918...50,931,437
Ensembl chr20:50,888,916...50,931,437 		JBrowse link
G AHCY adenosylhomocysteinase enables ISO (PMID:8419320) MGI PMID:8419320 NCBI chr20:34,231,981...34,311,836
Ensembl chr20:34,280,268...34,311,802 		JBrowse link
G ALB albumin enables NAS (PMID:14726550) UniProt PMID:14726550 NCBI chr 4:73,404,287...73,421,482
Ensembl chr 4:73,397,114...73,421,482 		JBrowse link
G ANG angiogenin enables IDA (PMID:9245697) UniProt PMID:9245697 NCBI chr14:20,684,177...20,694,186
Ensembl chr14:20,684,177...20,698,971 		JBrowse link
G AOC1 amine oxidase copper containing 1 enables IDA
IEA
IBA		 (PMID:12072962), (PMID:19764817) UniProt
TreeGrafter
GO_Central
InterPro		 PMID:12072962 PMID:19764817 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:150,852,120...150,861,504
Ensembl chr 7:150,824,627...150,861,504 		JBrowse link
G AOC2 amine oxidase copper containing 2 enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr17:42,844,580...42,850,707
Ensembl chr17:42,844,580...42,850,707 		JBrowse link
G AOC3 amine oxidase copper containing 3 enables IEA
IDA
IBA		 (PMID:16046623) InterPro
UniProt
GO_Central		 PMID:16046623 GO_REF:0000002 GO_REF:0000033 NCBI chr17:42,851,199...42,858,124
Ensembl chr17:42,851,184...42,858,130 		JBrowse link
G APOA4 apolipoprotein A4 enables IDA (PMID:16945374) HGNC-UCL PMID:16945374 NCBI chr11:116,820,700...116,823,304
Ensembl chr11:116,820,700...116,823,304 		JBrowse link
G ATOX1 antioxidant 1 copper chaperone enables IDA (PMID:12029094) UniProt PMID:12029094 NCBI chr 5:151,742,822...151,758,631
Ensembl chr 5:151,742,316...151,772,532 		JBrowse link
G ATP7A ATPase copper transporting alpha enables IEA
IBA
IDA		 (PMID:15670166) InterPro
TreeGrafter
GO_Central
UniProt		 PMID:15670166 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,690...78,050,395 		JBrowse link
G ATP7B ATPase copper transporting beta enables ISO
IBA
IEA
IDA		 (PMID:12029094), (PMID:14709553) RGD
GO_Central
TreeGrafter
UniProt
InterPro		 PMID:12029094 PMID:14709553 PMID:14732483 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 RGD:1581812 NCBI chr13:51,932,669...52,012,132
Ensembl chr13:51,930,436...52,012,125 		JBrowse link
G CCS copper chaperone for superoxide dismutase enables IDA
IBA
IEA		 (PMID:9726962) GO_Central
InterPro		 PMID:9726962 GO_REF:0000002 GO_REF:0000033 NCBI chr11:66,593,185...66,606,019
Ensembl chr11:66,593,153...66,606,019 		JBrowse link
G COA6 cytochrome c oxidase assembly factor 6 enables IDA (PMID:26160915) UniProt PMID:26160915 NCBI chr 1:234,373,456...234,385,080
Ensembl chr 1:234,373,456...234,385,080 		JBrowse link
G COMMD1 copper metabolism domain containing 1 enables IDA (PMID:17309234) UniProt PMID:17309234 NCBI chr 2:61,888,391...62,136,058
Ensembl chr 2:61,888,724...62,147,247 		JBrowse link
G COX11 cytochrome c oxidase copper chaperone COX11 enables IEA InterPro GO_REF:0000002 NCBI chr17:54,951,902...54,968,785
Ensembl chr17:54,951,902...54,968,703 		JBrowse link
G COX17 cytochrome c oxidase copper chaperone COX17 enables IEA
TAS		 (PMID:9050918) InterPro
Ensembl
PINC		 PMID:9050918 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:119,663,975...119,677,406
Ensembl chr 3:119,654,513...119,677,454 		JBrowse link
G CP ceruloplasmin enables ISO
IEA		 RGD
InterPro		 PMID:12099680 GO_REF:0000002 RGD:727703 NCBI chr 3:149,162,414...149,221,829
Ensembl chr 3:149,162,410...149,221,829 		JBrowse link
G CUTA cutA divalent cation tolerance homolog enables IBA GO_Central GO_REF:0000033 NCBI chr 6:33,416,442...33,418,107
Ensembl chr 6:33,416,442...33,418,317 		JBrowse link
G CUTC cutC copper transporter enables IDA
IBA
NAS		 (PMID:19878721)
(PMID:16182249)		 UniProt
GO_Central		 PMID:16182249 PMID:19878721 GO_REF:0000033 NCBI chr10:99,732,234...99,756,134
Ensembl chr10:99,702,558...99,756,134 		JBrowse link
G DBH dopamine beta-hydroxylase enables ISO
IBA
IEA
IDA		 (PMID:27152332), (PMID:7961964) RGD
GO_Central
InterPro
UniProt		 PMID:7961964 PMID:10573542 PMID:27152332 GO_REF:0000002 GO_REF:0000033 RGD:1625403 NCBI chr 9:133,636,363...133,659,329
Ensembl chr 9:133,636,363...133,659,329 		JBrowse link
G DCT dopachrome tautomerase enables TAS (PMID:8206391) PINC PMID:8206391 NCBI chr13:94,436,811...94,549,406
Ensembl chr13:94,436,811...94,479,682 		JBrowse link
G F5 coagulation factor V enables IEA InterPro GO_REF:0000002 NCBI chr 1:169,511,951...169,586,481
Ensembl chr 1:169,511,951...169,586,588 		JBrowse link
G F8 coagulation factor VIII enables IEA InterPro GO_REF:0000002 NCBI chr  X:154,835,792...155,022,723
Ensembl chr  X:154,835,788...155,026,940 		JBrowse link
G GPC1 glypican 1 enables IDA (PMID:12732622) UniProt PMID:12732622 NCBI chr 2:240,435,663...240,468,076
Ensembl chr 2:240,435,663...240,468,076 		JBrowse link
G HAMP hepcidin antimicrobial peptide enables IEA Ensembl GO_REF:0000107 NCBI chr19:35,282,528...35,285,143
Ensembl chr19:35,280,716...35,285,143 		JBrowse link
G HEPH hephaestin enables IMP
IEA		 (PMID:22961397) UniProt
InterPro		 PMID:22961397 GO_REF:0000002 NCBI chr  X:66,162,671...66,268,863
Ensembl chr  X:66,162,671...66,268,867 		JBrowse link
G HEPHL1 hephaestin like 1 enables IEA InterPro GO_REF:0000002 NCBI chr11:94,021,354...94,114,208
Ensembl chr11:94,021,354...94,114,208 		JBrowse link
G IL1A interleukin 1 alpha enables IDA (PMID:12746488) UniProt PMID:12746488 NCBI chr 2:112,773,925...112,784,493
Ensembl chr 2:112,773,925...112,784,493 		JBrowse link
G LACC1 laccase domain containing 1 enables IBA GO_Central GO_REF:0000033 NCBI chr13:43,879,178...43,893,932
Ensembl chr13:43,879,284...43,893,932 		JBrowse link
G LOX lysyl oxidase enables ISO
IEA
TAS		 (PMID:1357535) RGD
Ensembl
UniProt
PINC
InterPro		 PMID:1357535 PMID:16432278 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 RGD:1600669 NCBI chr 5:122,063,195...122,078,259
Ensembl chr 5:122,063,195...122,078,413 		JBrowse link
G LOXL1 lysyl oxidase like 1 enables IEA InterPro GO_REF:0000002 NCBI chr15:73,926,462...73,952,136
Ensembl chr15:73,925,989...73,952,137 		JBrowse link
G LOXL2 lysyl oxidase like 2 enables IEA
IDA		 (PMID:29581294) InterPro
UniProt		 PMID:29581294 GO_REF:0000002 GO_REF:0000104 NCBI chr 8:23,296,897...23,404,120
Ensembl chr 8:23,296,897...23,425,328 		JBrowse link
G LOXL3 lysyl oxidase like 3 enables IEA
NAS		 (PMID:11284725) InterPro
UniProt		 PMID:11284725 GO_REF:0000002 GO_REF:0000104 NCBI chr 2:74,532,258...74,555,702
Ensembl chr 2:74,532,258...74,555,690 		JBrowse link
G LOXL4 lysyl oxidase like 4 enables IEA InterPro GO_REF:0000002 NCBI chr10:98,247,690...98,268,194
Ensembl chr10:98,247,690...98,268,194 		JBrowse link
G MOXD1 monooxygenase DBH like 1 enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:132,296,055...132,401,475
Ensembl chr 6:132,296,055...132,401,475 		JBrowse link
G MOXD2P monooxygenase DBH like 2, pseudogene enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 7:142,240,737...142,247,067
Ensembl chr 7:142,240,740...142,247,067 		JBrowse link
G MT-CO2 mitochondrially encoded cytochrome c oxidase II enables IEA InterPro GO_REF:0000002 NCBI chr MT:7,586...8,269
Ensembl chr MT:7,586...8,269 		JBrowse link
G MT1X metallothionein 1X enables ISO (PMID:9358851) MGI PMID:9358851 NCBI chr16:56,682,470...56,684,196
Ensembl chr16:56,682,470...56,684,196 		JBrowse link
G MT3 metallothionein 3 enables ISO
IEA
TAS
IDA		 (PMID:8751715)
(PMID:21320589)		 RGD
Ensembl
UniProt		 PMID:8751715 PMID:12058024 PMID:21320589 GO_REF:0000107 RGD:625483 NCBI chr16:56,589,528...56,591,085
Ensembl chr16:56,589,074...56,591,088 		JBrowse link
G MTCO2P12 MT-CO2 pseudogene 12 enables IEA InterPro GO_REF:0000002 NCBI chr 1:632,757...633,438
Ensembl chr 1:632,757...633,438 		JBrowse link
G OR4E2 olfactory receptor family 4 subfamily E member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr14:21,653,835...21,667,642
Ensembl chr14:21,653,835...21,667,642 		JBrowse link
G OR5AR1 olfactory receptor family 5 subfamily AR member 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:56,663,686...56,664,618
Ensembl chr11:56,663,686...56,664,618 		JBrowse link
G P2RX2 purinergic receptor P2X 2 ISO RGD PMID:16190872 RGD:1642665 NCBI chr12:132,618,776...132,622,388
Ensembl chr12:132,618,776...132,622,388 		JBrowse link
G P2RX4 purinergic receptor P2X 4 enables ISO
IEA
ISS		 (PMID:12819199) RGD
Ensembl
BHF-UCL		 PMID:12819199 GO_REF:0000107 RGD:1642695 NCBI chr12:121,210,129...121,234,106
Ensembl chr12:121,210,065...121,234,106 		JBrowse link
G P2RX7 purinergic receptor P2X 7 ISO RGD PMID:17394459 RGD:1642698 NCBI chr12:121,132,876...121,188,032
Ensembl chr12:121,132,819...121,188,032 		JBrowse link
G PAM peptidylglycine alpha-amidating monooxygenase enables ISO
ISS
IEA		 RGD
UniProt
InterPro		 PMID:16931045 GO_REF:0000002 GO_REF:0000024 RGD:2302417 NCBI chr 5:102,754,783...103,031,105
Ensembl chr 5:102,753,981...103,029,730 		JBrowse link
G PARK7 Parkinsonism associated deglycase enables IDA (PMID:23792957) UniProt PMID:23792957 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
G PRND prion like protein doppel enables IDA
IEA
IBA		 (PMID:20411530) UniProt
TreeGrafter
GO_Central
Ensembl		 PMID:20411530 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr20:4,721,909...4,728,460
Ensembl chr20:4,721,909...4,728,460 		JBrowse link
G PRNP prion protein (Kanno blood group) enables IEA
IDA
TAS		 (PMID:11900542)
(PMID:16294306), (PMID:19242475), (PMID:24970228)		 Ensembl
UniProt		 PMID:11900542 PMID:16294306 PMID:19242475 PMID:24970228 GO_REF:0000107 NCBI chr20:4,686,456...4,701,588
Ensembl chr20:4,686,350...4,701,590 		JBrowse link
G RNF7 ring finger protein 7 enables TAS (PMID:10082581) PINC PMID:10082581 NCBI chr 3:141,738,298...141,747,560
Ensembl chr 3:141,738,249...141,747,560 		JBrowse link
G RNPEP arginyl aminopeptidase ISO RGD PMID:17142967 RGD:2325932 NCBI chr 1:201,982,648...202,006,143
Ensembl chr 1:201,982,372...202,006,147 		JBrowse link
G S100A12 S100 calcium binding protein A12 enables TAS (PMID:18443896) UniProt PMID:18443896 NCBI chr 1:153,373,711...153,375,621
Ensembl chr 1:153,373,711...153,375,621 		JBrowse link
G S100A13 S100 calcium binding protein A13 enables IDA (PMID:12746488), (PMID:16145699) UniProt PMID:12746488 PMID:16145699 NCBI chr 1:153,618,799...153,634,361
Ensembl chr 1:153,618,787...153,631,360 		JBrowse link
G S100A5 S100 calcium binding protein A5 enables IDA (PMID:19536568) UniProt PMID:19536568 NCBI chr 1:153,537,147...153,543,685
Ensembl chr 1:153,537,147...153,541,765 		JBrowse link
G SCO1 synthesis of cytochrome C oxidase 1 enables IEA InterPro GO_REF:0000002 NCBI chr17:10,672,474...10,697,533
Ensembl chr17:10,672,474...10,698,375 		JBrowse link
G SCO2 synthesis of cytochrome C oxidase 2 enables IEA
NAS		 (PMID:10545952) InterPro
UniProt		 PMID:10545952 GO_REF:0000002 NCBI chr22:50,523,568...50,526,442
Ensembl chr22:50,523,568...50,526,461 		JBrowse link
G SLC11A2 solute carrier family 11 member 2 ISO RGD PMID:9242408 RGD:729857 NCBI chr12:50,952,263...51,028,886
Ensembl chr12:50,979,401...51,028,566 		JBrowse link
G SLC31A1 solute carrier family 31 member 1 enables IDA (PMID:26745413) UniProt PMID:26745413 NCBI chr 9:113,221,544...113,264,492
Ensembl chr 9:113,221,544...113,264,492 		JBrowse link
G SNAI3 snail family transcriptional repressor 3 enables IEA InterPro GO_REF:0000002 NCBI chr16:88,677,688...88,686,507
Ensembl chr16:88,677,688...88,686,507 		JBrowse link
G SNCA synuclein alpha enables IDA (PMID:21319811), (PMID:21320589) UniProt PMID:21319811 PMID:21320589 NCBI chr 4:89,724,099...89,838,304
Ensembl chr 4:89,700,345...89,838,315 		JBrowse link
G SOD1 superoxide dismutase 1 enables ISO
IBA
IEA
IDA		 (PMID:17008312) RGD
GO_Central
InterPro
UniProt		 PMID:12514262 PMID:17008312 GO_REF:0000002 GO_REF:0000033 RGD:634854 NCBI chr21:31,659,693...31,668,931
Ensembl chr21:31,659,666...31,668,931 		JBrowse link
G SOD3 superoxide dismutase 3 enables IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 4:24,795,573...24,800,842
Ensembl chr 4:24,789,912...24,800,842 		JBrowse link
G TP53 tumor protein p53 enables IDA (PMID:7824276) UniProt PMID:7824276 NCBI chr17:7,668,421...7,687,490
Ensembl chr17:7,661,779...7,687,546 		JBrowse link
G TYR tyrosinase enables IMP (PMID:11092760) UniProt PMID:11092760 NCBI chr11:89,177,875...89,295,759
Ensembl chr11:89,177,875...89,295,759 		JBrowse link
cupric ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 enables ISS (PMID:23202360) ParkinsonsUK-UCL PMID:23202360 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming enables IDA (PMID:36206754) UniProt PMID:36206754 NCBI chr11:1,074,874...1,110,508
Ensembl chr11:1,074,875...1,110,511 		JBrowse link
G PARK7 Parkinsonism associated deglycase enables IDA (PMID:24567322) ParkinsonsUK-UCL PMID:24567322 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
G PRNP prion protein (Kanno blood group) enables IEA Ensembl GO_REF:0000107 NCBI chr20:4,686,456...4,701,588
Ensembl chr20:4,686,350...4,701,590 		JBrowse link
G SUMF1 sulfatase modifying factor 1 enables IDA (PMID:25931126) UniProt PMID:25931126 NCBI chr 3:4,034,486...4,467,269
Ensembl chr 3:3,700,814...4,467,273 		JBrowse link
cuprous ion binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOX1 antioxidant 1 copper chaperone enables IDA (PMID:31283225) UniProt PMID:31283225 NCBI chr 5:151,742,822...151,758,631
Ensembl chr 5:151,742,316...151,772,532 		JBrowse link
G ATP7A ATPase copper transporting alpha enables IDA
IMP		 (PMID:31283225)
(PMID:14572476), (PMID:15035611)		 UniProt
CAFA		 PMID:14572476 PMID:15035611 PMID:31283225 NCBI chr  X:77,910,693...78,050,395
Ensembl chr  X:77,910,690...78,050,395 		JBrowse link
G COX17 cytochrome c oxidase copper chaperone COX17 enables IDA (PMID:18093982) CAFA PMID:18093982 NCBI chr 3:119,663,975...119,677,406
Ensembl chr 3:119,654,513...119,677,454 		JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming enables IDA (PMID:36206754) UniProt PMID:36206754 NCBI chr11:1,074,874...1,110,508
Ensembl chr11:1,074,875...1,110,511 		JBrowse link
G PARK7 Parkinsonism associated deglycase enables IDA (PMID:24144264), (PMID:24567322) ParkinsonsUK-UCL PMID:24144264 PMID:24567322 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
G PRNP prion protein (Kanno blood group) enables IMP (PMID:20564047) CAFA PMID:20564047 NCBI chr20:4,686,456...4,701,588
Ensembl chr20:4,686,350...4,701,590 		JBrowse link
G SNCA synuclein alpha enables IMP
IBA
IEA		 (PMID:25495902) CAFA
GO_Central
TreeGrafter		 PMID:25495902 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:89,724,099...89,838,304
Ensembl chr 4:89,700,345...89,838,315 		JBrowse link
G SNCB synuclein beta enables IMP
IEA
IBA		 (PMID:25495902) CAFA
TreeGrafter
GO_Central		 PMID:25495902 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:176,620,082...176,630,534
Ensembl chr 5:176,620,082...176,630,556 		JBrowse link
G SNCG synuclein gamma enables IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:86,955,759...86,963,258
Ensembl chr10:86,958,599...86,963,258 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19489
    binding 17887
      small molecule binding 6595
        ion binding 6373
          cation binding 4636
            metal ion binding 4520
              transition metal ion binding 1189
                copper ion binding 70
                  cupric ion binding 5
                  cuprous ion binding 9
paths to the root