S100A13 (S100 calcium binding protein A13) - Rat Genome Database

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Gene: S100A13 (S100 calcium binding protein A13) Homo sapiens
Analyze
Symbol: S100A13
Name: S100 calcium binding protein A13
RGD ID: 1312636
HGNC Page HGNC
Description: Exhibits several functions, including RAGE receptor binding activity; fibroblast growth factor binding activity; and metal ion binding activity. Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Localizes to several cellular components, including extracellular space; nuclear lumen; and perinuclear region of cytoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: protein S100-A13; S100 calcium-binding protein A13
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1153,618,787 - 153,631,360 (-)EnsemblGRCh38hg38GRCh38
GRCh381153,618,799 - 153,634,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371153,591,275 - 153,606,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,857,899 - 151,873,192 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map1q21.3NCBI
HuRef1124,954,786 - 124,970,074 (-)NCBIHuRef
CHM1_11154,987,252 - 155,002,545 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
1. GOA_HUMAN data from the GO Consortium
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7566098   PMID:7759097   PMID:8878558   PMID:8985590   PMID:9712836   PMID:10051426   PMID:10722710   PMID:11432880   PMID:12118070   PMID:12135982   PMID:12477932   PMID:12645008  
PMID:12746488   PMID:14702039   PMID:15033494   PMID:15489334   PMID:15635413   PMID:15821778   PMID:16145699   PMID:16169070   PMID:16341674   PMID:16710414   PMID:16773219   PMID:17077500  
PMID:17374362   PMID:18259052   PMID:19284995   PMID:20208480   PMID:20863990   PMID:21270123   PMID:21873635   PMID:21988832   PMID:22810586   PMID:22863883   PMID:22939629   PMID:23376485  
PMID:23443559   PMID:24722184   PMID:24982031   PMID:25416956   PMID:27008379   PMID:27068509   PMID:27503909   PMID:28514442   PMID:30021884   PMID:30047626   PMID:30670674   PMID:31073086  
PMID:32203420   PMID:32296183  


Genomics

Comparative Map Data
S100A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1153,618,787 - 153,631,360 (-)EnsemblGRCh38hg38GRCh38
GRCh381153,618,799 - 153,634,361 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371153,591,275 - 153,606,837 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,857,899 - 151,873,192 (-)NCBINCBI36hg18NCBI36
Cytogenetic Map1q21.3NCBI
HuRef1124,954,786 - 124,970,074 (-)NCBIHuRef
CHM1_11154,987,252 - 155,002,545 (-)NCBICHM1_1
S100a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,421,539 - 90,431,888 (+)NCBIGRCm39mm39
GRCm39 Ensembl390,421,742 - 90,431,888 (+)Ensembl
GRCm38390,514,233 - 90,524,581 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,514,435 - 90,524,581 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,318,682 - 90,328,503 (+)NCBIGRCm37mm9NCBIm37
MGSCv36390,600,362 - 90,610,504 (+)NCBImm8
Celera390,552,599 - 90,563,125 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
S100a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22175,999,439 - 176,005,933 (+)NCBI
Rnor_6.0 Ensembl2189,906,022 - 189,912,516 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02189,906,022 - 189,912,516 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02209,329,663 - 209,342,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,790,173 - 182,796,668 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12182,741,175 - 182,746,774 (+)NCBI
Celera2169,934,942 - 169,936,034 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545264,455 - 282,497 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545266,674 - 282,408 (-)NCBIChiLan1.0ChiLan1.0
S100A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11132,602,772 - 132,616,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,602,772 - 132,616,373 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01128,973,910 - 128,984,234 (-)NCBIMhudiblu_PPA_v0panPan3
S100A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,428,538 - 43,442,052 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,433,253 - 43,447,513 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,921,215 - 42,935,025 (+)NCBI
ROS_Cfam_1.0743,377,905 - 43,391,739 (+)NCBI
UMICH_Zoey_3.1743,080,696 - 43,094,042 (+)NCBI
UNSW_CanFamBas_1.0743,134,412 - 43,147,710 (+)NCBI
UU_Cfam_GSD_1.0743,418,067 - 43,431,559 (+)NCBI
S100a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,389,636 - 24,399,093 (-)NCBI
SpeTri2.0NW_0049365803,420,016 - 3,429,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,007,280 - 96,025,120 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
S100A13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,177,062 - 10,186,382 (+)NCBI
ChlSab1.1 Ensembl2010,177,694 - 10,186,421 (+)Ensembl
Vero_WHO_p1.0NW_0236660389,554,251 - 9,563,594 (+)NCBI
S100a13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248853,512,424 - 3,527,462 (+)NCBI

Position Markers
SHGC-34733  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X53,196,422 - 53,196,521UniSTSGRCh37
GRCh371153,576,996 - 153,577,095UniSTSGRCh37
Build 36X53,213,147 - 53,213,246RGDNCBI36
CeleraX57,025,665 - 57,025,764RGD
Celera1126,648,528 - 126,648,627UniSTS
HuRef1124,940,211 - 124,940,310UniSTS
HuRefX50,261,575 - 50,261,674UniSTS
RH69545  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,577,602 - 153,577,836UniSTSGRCh37
Build 361151,844,226 - 151,844,460RGDNCBI36
Celera1126,649,134 - 126,649,368RGD
HuRef1124,940,817 - 124,941,051UniSTS
RH91554  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,598,798 - 153,598,979UniSTSGRCh37
Build 361151,865,422 - 151,865,603RGDNCBI36
Celera1126,669,833 - 126,670,014RGD
Cytogenetic Map1q21UniSTS
HuRef1124,962,303 - 124,962,484UniSTS
GeneMap99-GB4 RH Map1555.98UniSTS
RH41891  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,591,298 - 153,591,441UniSTSGRCh37
Build 361151,857,922 - 151,858,065RGDNCBI36
Cytogenetic Map1q21UniSTS
HuRef1124,954,809 - 124,954,952UniSTS
GeneMap99-GB4 RH Map1557.59UniSTS
NCBI RH Map11307.9UniSTS
RH71309  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,591,296 - 153,591,436UniSTSGRCh37
Build 361151,857,920 - 151,858,060RGDNCBI36
Cytogenetic Map1q21UniSTS
HuRef1124,954,807 - 124,954,947UniSTS
GeneMap99-GB4 RH Map1538.9UniSTS
NCBI RH Map11157.6UniSTS
STS-X58079  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,604,305 - 153,604,487UniSTSGRCh37
Build 361151,870,929 - 151,871,111RGDNCBI36
Celera1126,675,340 - 126,675,522RGD
Cytogenetic Map1q21UniSTS
HuRef1124,967,810 - 124,967,992UniSTS
GeneMap99-GB4 RH Map1558.0UniSTS
NCBI RH Map11196.1UniSTS
S100A1_2878  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,604,127 - 153,604,612UniSTSGRCh37
Build 361151,870,751 - 151,871,236RGDNCBI36
Celera1126,675,162 - 126,675,647RGD
HuRef1124,967,632 - 124,968,117UniSTS
S100A1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371153,604,195 - 153,604,294UniSTSGRCh37
Celera1126,675,230 - 126,675,329UniSTS
HuRef1124,967,700 - 124,967,799UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2957
Count of miRNA genes:681
Interacting mature miRNAs:811
Transcripts:ENST00000339556, ENST00000368699, ENST00000392622, ENST00000392623, ENST00000440685, ENST00000472233, ENST00000476133, ENST00000484413, ENST00000491177, ENST00000497086
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1 17 1
Medium 2405 2226 1617 523 626 365 4352 2163 3663 406 1423 1570 171 1204 2786 3
Low 27 755 106 101 1312 99 3 30 54 13 11 39 4 1 2 1 2
Below cutoff 8 9 1 1 12 6 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001024211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001024212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001024213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005245434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011509864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017002036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA366085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL162258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX038714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY987392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC070291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM762088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM913375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX470102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX472819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK817939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR542149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X99920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000339556   ⟹   ENSP00000344822
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,799 - 153,628,180 (-)Ensembl
RefSeq Acc Id: ENST00000392622   ⟹   ENSP00000376398
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,804 - 153,627,048 (-)Ensembl
RefSeq Acc Id: ENST00000392623   ⟹   ENSP00000376399
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,804 - 153,627,268 (-)Ensembl
RefSeq Acc Id: ENST00000440685   ⟹   ENSP00000392767
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,802 - 153,628,239 (-)Ensembl
RefSeq Acc Id: ENST00000476133
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,787 - 153,628,248 (-)Ensembl
RefSeq Acc Id: ENST00000491177
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1153,618,808 - 153,631,360 (-)Ensembl
RefSeq Acc Id: NM_001024210   ⟹   NP_001019381
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,634,361 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Build 361151,857,899 - 151,873,192 (-)NCBI Archive
HuRef1124,954,786 - 124,970,074 (-)ENTREZGENE
CHM1_11154,987,252 - 155,002,545 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001024211   ⟹   NP_001019382
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,627,505 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Build 361151,857,899 - 151,866,741 (-)NCBI Archive
HuRef1124,954,786 - 124,970,074 (-)ENTREZGENE
CHM1_11154,987,252 - 154,996,094 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001024212   ⟹   NP_001019383
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,627,239 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Build 361151,857,899 - 151,866,368 (-)NCBI Archive
HuRef1124,954,786 - 124,970,074 (-)ENTREZGENE
CHM1_11154,987,252 - 154,995,721 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001024213   ⟹   NP_001019384
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,627,505 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Build 361151,857,899 - 151,866,148 (-)NCBI Archive
HuRef1124,954,786 - 124,970,074 (-)ENTREZGENE
CHM1_11154,987,252 - 154,995,501 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005979   ⟹   NP_005970
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,628,250 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Build 361151,857,899 - 151,867,339 (-)NCBI Archive
HuRef1124,954,786 - 124,970,074 (-)ENTREZGENE
CHM1_11154,987,252 - 154,996,692 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005245434   ⟹   XP_005245491
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,631,127 (-)NCBI
GRCh371153,591,275 - 153,606,582 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509862   ⟹   XP_011508164
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,634,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509863   ⟹   XP_011508165
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,634,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011509864   ⟹   XP_011508166
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,630,538 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002034   ⟹   XP_016857523
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,634,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002035   ⟹   XP_016857524
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,634,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017002036   ⟹   XP_016857525
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,618,799 - 153,626,960 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001019381   ⟸   NM_001024210
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_005970   ⟸   NM_005979
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001019382   ⟸   NM_001024211
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001019383   ⟸   NM_001024212
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001019384   ⟸   NM_001024213
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005245491   ⟸   XM_005245434
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011508165   ⟸   XM_011509863
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011508164   ⟸   XM_011509862
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011508166   ⟸   XM_011509864
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016857523   ⟸   XM_017002034
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016857524   ⟸   XM_017002035
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016857525   ⟸   XM_017002036
- Peptide Label: isoform X1
- UniProtKB: Q99584 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000392767   ⟸   ENST00000440685
RefSeq Acc Id: ENSP00000344822   ⟸   ENST00000339556
RefSeq Acc Id: ENSP00000376399   ⟸   ENST00000392623
RefSeq Acc Id: ENSP00000376398   ⟸   ENST00000392622
Protein Domains
EF-hand   S_100

Promoters
RGD ID:6786765
Promoter ID:HG_KWN:5200
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001024211,   NM_001024212,   OTTHUMT00000089927,   UC001FCF.2,   UC009WOH.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361151,866,304 - 151,866,804 (-)MPROMDB
RGD ID:6786764
Promoter ID:HG_KWN:5203
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid,   NB4
Transcripts:NM_001024210,   OTTHUMT00000089928,   OTTHUMT00000089929,   OTTHUMT00000089930,   OTTHUMT00000089932
Position:
Human AssemblyChrPosition (strand)Source
Build 361151,873,084 - 151,873,584 (-)MPROMDB
RGD ID:6857248
Promoter ID:EPDNEW_H1789
Type:initiation region
Name:S100A13_1
Description:S100 calcium binding protein A13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1791  EPDNEW_H1795  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,627,505 - 153,627,565EPDNEW
RGD ID:6857252
Promoter ID:EPDNEW_H1791
Type:initiation region
Name:S100A13_3
Description:S100 calcium binding protein A13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1789  EPDNEW_H1795  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,628,250 - 153,628,310EPDNEW
RGD ID:6857260
Promoter ID:EPDNEW_H1795
Type:initiation region
Name:S100A13_2
Description:S100 calcium binding protein A13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H1789  EPDNEW_H1791  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381153,634,361 - 153,634,421EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2
pathogenic
GRCh37/hg19 1q21.3(chr1:153412418-153604246)x3 copy number gain Ductal breast carcinoma [RCV000207267] Chr1:153412418..153604246 [GRCh37]
Chr1:1q21.3
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q21.3(chr1:150853044-154647786)x3 copy number gain not provided [RCV000684655] Chr1:150853044..154647786 [GRCh37]
Chr1:1q21.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1q21.3(chr1:153488723-153750339)x3 copy number gain not provided [RCV000749192] Chr1:153488723..153750339 [GRCh37]
Chr1:1q21.3
benign
NM_006271.2(S100A1):c.60G>A (p.Ser20=) single nucleotide variant not provided [RCV000899559] Chr1:153630581 [GRCh38]
Chr1:153603057 [GRCh37]
Chr1:1q21.3
benign
GRCh37/hg19 1q21.3(chr1:153321482-153835605)x3 copy number gain not provided [RCV000847221] Chr1:153321482..153835605 [GRCh37]
Chr1:1q21.3
uncertain significance
GRCh37/hg19 1q21.3(chr1:153061323-153904594)x3 copy number gain not provided [RCV001005141] Chr1:153061323..153904594 [GRCh37]
Chr1:1q21.3
uncertain significance
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:10490 AgrOrtholog
COSMIC S100A13 COSMIC
Ensembl Genes ENSG00000189171 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSP00000344822 UniProtKB/Swiss-Prot
  ENSP00000376398 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000376399 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000392767 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000339556 UniProtKB/Swiss-Prot
  ENST00000392622 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000392623 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000440685 ENTREZGENE, UniProtKB/Swiss-Prot
GTEx ENSG00000189171 GTEx
HGNC ID HGNC:10490 ENTREZGENE
Human Proteome Map S100A13 Human Proteome Map
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100A13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6284 UniProtKB/Swiss-Prot
NCBI Gene 6284 ENTREZGENE
OMIM 601989 OMIM
PANTHER PTHR11639:SF57 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34902 PharmGKB
SMART S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3DV53_HUMAN UniProtKB/TrEMBL
  Q99584 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q52PI9 UniProtKB/Swiss-Prot
  Q6FGF8 UniProtKB/Swiss-Prot