SOD3 (superoxide dismutase 3) - Rat Genome Database

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Gene: SOD3 (superoxide dismutase 3) Homo sapiens
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Symbol: SOD3
Name: superoxide dismutase 3
RGD ID: 736515
HGNC Page HGNC:11181
Description: Enables molecular adaptor activity. Predicted to be involved in removal of superoxide radicals. Predicted to act upstream of or within response to hypoxia. Located in collagen-containing extracellular matrix. Implicated in several diseases, including coronary artery disease (multiple); diabetes mellitus (multiple); diabetic retinopathy; lung disease (multiple); and polyneuropathy. Biomarker of intermediate coronary syndrome and myocardial infarction.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: EC-SOD; extracellular superoxide dismutase; extracellular superoxide dismutase [Cu-Zn]; MGC20077; superoxide dismutase 3, extracellular; testicular tissue protein Li 175
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38424,795,573 - 24,800,842 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl424,789,912 - 24,800,842 (+)EnsemblGRCh38hg38GRCh38
GRCh37424,797,195 - 24,802,464 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36424,406,183 - 24,411,565 (+)NCBINCBI36Build 36hg18NCBI36
Build 34424,472,323 - 24,478,733NCBI
Celera425,246,551 - 25,251,936 (+)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,139,594 - 24,144,972 (+)NCBIHuRef
CHM1_1424,796,442 - 24,801,824 (+)NCBICHM1_1
T2T-CHM13v2.0424,777,502 - 24,782,774 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
SOD3Humanbrain ischemia  ISOSod3 (Mus musculus)1580852 RGD 
SOD3Humanchronic obstructive pulmonary disease susceptibilityIAGP 1581270DNA:polymorphism: :p.R213G (human)RGD 
SOD3Humancoronary artery disease  IDA 1580853 RGD 
SOD3Humandiabetes mellitus  IDA 1581299 RGD 
SOD3HumanDiabetic Nephropathies  ISOSod3 (Mus musculus)2312361protein:decreased expression:kidneyRGD 
SOD3Humandiabetic retinopathy  IDA 1581298 RGD 
SOD3HumanFibrosis  IDA 1581266 RGD 
SOD3Humanheart disease  IDA 1580843 RGD 
SOD3Humanheart disease  IDA 1579965 RGD 
SOD3HumanHyperoxia  IDA 1581277 RGD 
SOD3Humanhypertension  ISOSod3 (Rattus norvegicus)1580845 RGD 
SOD3Humanhypertension  ISOSod3 (Mus musculus)1581232 RGD 
SOD3HumanHypertriglyceridemia  IAGP 401827159associated with coronary artery disease more ...RGD 
SOD3HumanHypoxia  ISOSod3 (Mus musculus)1581265 RGD 
SOD3HumanInsulin Resistance  IEP 1625698associated with Diabetes Mellitus more ...RGD 
SOD3Humanintermediate coronary syndrome  IEP 1580841 RGD 
SOD3HumanLiver Reperfusion Injury treatmentIMP 1581095human gene in a rat modelRGD 
SOD3Humanmyocardial infarction  IDA 1580841 RGD 
SOD3Humanmyocardial infarction  IEP 1580841 RGD 
SOD3HumanMyocardial Ischemia  IAGP 1580842 RGD 
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Original Reference(s)
SOD3HumanMyocardial Ischemia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Superoxide dismutase and elevated extracellularClinVarPMID:14662715 more ...
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Original Reference(s)
SOD3HumanChemical and Drug Induced Liver Injury  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:11529661
SOD3Humanchronic obstructive pulmonary disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16399992 and PMID:16467073
SOD3Humancongestive heart failure  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:20304815
SOD3Humancontact dermatitis  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:17392825
SOD3Humandiffuse large B-cell lymphoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16081686
SOD3HumanDisease Progression  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16081686
SOD3Humanhypertension  EXP 11554173CTD more ...CTDPMID:16864745 and PMID:17023265
SOD3HumanNecrosis  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:11529661
SOD3Humanpulmonary fibrosis  EXP 11554173CTD Direct Evidence: therapeuticCTDPMID:15298984
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Original Reference(s)
SOD3Human(+)-catechin multiple interactionsEXP 6480464[Oxygen deficiency co-treated with Catechin] results in decreased expression of SOD3 mRNACTDPMID:35883890
SOD3Human(-)-epigallocatechin 3-gallate decreases expressionEXP 6480464epigallocatechin gallate results in decreased expression of SOD3 mRNACTDPMID:20706672
SOD3Human(E)-cinnamyl alcohol increases expressionEXP 6480464cinnamyl alcohol results in increased expression of SOD3 mRNACTDPMID:20566472
SOD3Human1,1-dichloroethene decreases expressionISOSod3 (Mus musculus)6480464vinylidene chloride results in decreased expression of SOD3 mRNACTDPMID:26682919
SOD3Human1,2-dimethylhydrazine decreases expressionISOSod3 (Rattus norvegicus)64804641 and 2-Dimethylhydrazine results in decreased expression of SOD3 mRNACTDPMID:32387197
SOD3Human1-chloro-2,4-dinitrobenzene increases expressionEXP 6480464Dinitrochlorobenzene results in increased expression of SOD3 mRNACTDPMID:20566472
SOD3Human17alpha-ethynylestradiol affects expressionISOSod3 (Mus musculus)6480464Ethinyl Estradiol affects the expression of SOD3 mRNACTDPMID:17555576
SOD3Human17alpha-ethynylestradiol decreases expressionISOSod3 (Rattus norvegicus)6480464Ethinyl Estradiol results in decreased expression of SOD3 mRNACTDPMID:17557909 and PMID:29097150
SOD3Human17alpha-ethynylestradiol multiple interactionsISOSod3 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SOD3 mRNACTDPMID:17942748
SOD3Human17beta-estradiol decreases expressionISOSod3 (Rattus norvegicus)6480464Estradiol results in decreased expression of SOD3 mRNA and Estradiol results in decreased expression of SOD3 proteinCTDPMID:23027624 and PMID:24894866
SOD3Human17beta-estradiol decreases expressionISOSod3 (Mus musculus)6480464Estradiol results in decreased expression of SOD3 mRNACTDPMID:39298647
SOD3Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of SOD3 mRNA and Estradiol results in decreased expression of SOD3 proteinCTDPMID:25130429 and PMID:28960787
SOD3Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of SOD3 mRNA more ...CTDPMID:25130429 and PMID:30165855
SOD3Human17beta-estradiol decreases activityISOSod3 (Rattus norvegicus)6480464Estradiol results in decreased activity of SOD3 proteinCTDPMID:23027624
SOD3Human17beta-estradiol increases expressionISOSod3 (Rattus norvegicus)6480464Estradiol results in increased expression of SOD3 mRNACTDPMID:12816884 more ...
SOD3Human17beta-estradiol increases stabilityISOSod3 (Rattus norvegicus)6480464Estradiol results in increased stability of SOD3 mRNACTDPMID:12816884
SOD3Human17beta-estradiol multiple interactionsISOSod3 (Mus musculus)6480464Estradiol inhibits the reaction [Progesterone results in decreased expression of SOD3 mRNA]CTDPMID:16195479
SOD3Human17beta-estradiol affects expressionISOSod3 (Mus musculus)6480464Estradiol affects the expression of SOD3 mRNACTDPMID:16195479
SOD3Human17beta-estradiol multiple interactionsISOSod3 (Rattus norvegicus)6480464Ascorbic Acid inhibits the reaction [Estradiol inhibits the reaction [NFE2L2 protein binds to SOD3 promoter]] more ...CTDPMID:12816884 more ...
SOD3Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionISOSod3 (Rattus norvegicus)64804642 more ...CTDPMID:21394737

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Biological Process

  

Cellular Component
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Original Reference(s)
SOD3Humancollagen-containing extracellular matrix located_inHDA 150520179 PMID:20551380 and PMID:27559042BHF-UCLPMID:20551380 and PMID:27559042
SOD3Humancollagen-containing extracellular matrix located_inIDA 150520179 PMID:9699963UniProtPMID:9699963
SOD3Humancollagen-containing extracellular matrix  ISOSod3 (Rattus norvegicus)9068941 RGDPMID:16372329 and REF_RGD_ID:1581086
SOD3Humanextracellular exosome located_inHDA 150520179 PMID:23533145UniProtPMID:23533145
SOD3Humanextracellular region located_inIEAUniProtKB-SubCell:SL-0112150520179 UniProtGO_REF:0000044
SOD3Humanextracellular region located_inTAS 150520179 ReactomeReactome:R-HSA-3299682 more ...
SOD3Humanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
SOD3Humanextracellular region located_inHDA 150520179 PMID:27068509BHF-UCLPMID:27068509
SOD3Humanextracellular space located_inIEAUniProtKB:O09164 and ensembl:ENSMUSP00000098768150520179 EnsemblGO_REF:0000107
SOD3Humanextracellular space located_inHDA 150520179 PMID:20551380BHF-UCLPMID:20551380
SOD3Humanextracellular space  ISOSod3 (Rattus norvegicus)9068941 RGDPMID:8643556 and REF_RGD_ID:730025
SOD3HumanGolgi apparatus located_inIEAUniProtKB-SubCell:SL-0132150520179 UniProtGO_REF:0000044
SOD3HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
SOD3HumanGolgi lumen located_inTAS 150520179 ReactomeReactome:R-HSA-4837364
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Molecular Function
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Original Reference(s)
SOD3Humanantioxidant activity enablesIEAUniProtKB-KW:KW-0049150520179 UniProtGO_REF:0000043
SOD3Humancopper ion binding enablesIBACGD:CAL0000184565 more ...150520179 GO_CentralGO_REF:0000033
SOD3Humancopper ion binding enablesIEAInterPro:IPR024134150520179 InterProGO_REF:0000002
SOD3Humanheparin binding enablesIEAUniProtKB-KW:KW-0358150520179 UniProtGO_REF:0000043
SOD3Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
SOD3Humanmetal ion binding enablesIEAInterPro:IPR001424 and InterPro:IPR036423150520179 InterProGO_REF:0000002
SOD3Humanmolecular adaptor activity enablesEXP 150520179 PMID:19289127DisProtPMID:19289127
SOD3Humanoxidoreductase activity enablesIEAUniProtKB-KW:KW-0560150520179 UniProtGO_REF:0000043
SOD3Humanprotein binding enablesIPIUniProtKB:O43765150520179 PMID:25416956IntActPMID:25416956
SOD3Humanprotein binding enablesIPIUniProtKB:Q04656150520179 PMID:16371425UniProtPMID:16371425
SOD3Humanprotein binding enablesIPIUniProtKB:Q12797-6 more ...150520179 PMID:32296183IntActPMID:32296183
SOD3Humanprotein binding enablesIPIUniProtKB:Q9UBX5150520179 PMID:15528465BHF-UCLPMID:15528465
SOD3Humansuperoxide dismutase activity  ISOSod3 (Rattus norvegicus)9068941 RGDPMID:8643556 and REF_RGD_ID:730025
SOD3Humansuperoxide dismutase activity enablesIEAUniProtKB:O09164 and ensembl:ENSMUSP00000098768150520179 EnsemblGO_REF:0000107
SOD3Humansuperoxide dismutase activity enablesIBACGD:CAL0000184565 more ...150520179 GO_CentralGO_REF:0000033
SOD3Humansuperoxide dismutase activity enablesIEARHEA:20696150520179 RHEAGO_REF:0000116
SOD3Humansuperoxide dismutase activity enablesIEAEC:1.15.1.1150520179 UniProtGO_REF:0000003
SOD3Humansuperoxide dismutase activity enablesTAS 150520179 PMID:8034674PINCPMID:8034674
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RGD Manual Annotations


  
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Original Reference(s)
SOD3Humancardiovascular system disease pathway  IDA 1579965 RGD 
SOD3Humandiabetes mellitus pathway  IDA 1581299 RGD 
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Original Reference(s)
SOD3HumanReduced FEV1/FVC ratio  IAGP 1581270DNA:polymorphism: :p.R213GRGD 

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#
Reference Title
Reference Citation
1. Relationship of plasma extracellular-superoxide dismutase level with insulin resistance in type 2 diabetic patients. Adachi T, etal., J Endocrinol. 2004 Jun;181(3):413-7.
2. Transgenic extracellular superoxide dismutase protects postnatal alveolar epithelial proliferation and development during hyperoxia. Auten RL, etal., Am J Physiol Lung Cell Mol Physiol. 2006 Jan;290(1):L32-40. Epub 2005 Aug 12.
3. Role of extracellular superoxide dismutase in bleomycin-induced pulmonary fibrosis. Bowler RP, etal., Am J Physiol Lung Cell Mol Physiol. 2002 Apr;282(4):L719-26.
4. Altered expression profile of superoxide dismutase isoforms in nasal polyps from nonallergic patients. Cheng YK, etal., Laryngoscope. 2006 Mar;116(3):417-22.
5. Gene transfer of extracellular superoxide dismutase reduces arterial pressure in spontaneously hypertensive rats: role of heparin-binding domain. Chu Y, etal., Circ Res. 2003 Mar 7;92(4):461-8. Epub 2003 Jan 23.
6. Long-term hyperglycaemia decreases vascular fraction of extracellular superoxide dismutase. Ciechanowski K, etal., Diabetologia. 2003 Jul;46(7):1026-7. Epub 2003 Jun 27.
7. Regulation of lung oxidative damage by endogenous superoxide dismutase in sepsis. Constantino L, etal., Intensive Care Med Exp. 2014 Dec;2(1):17. doi: 10.1186/2197-425X-2-17. Epub 2014 May 23.
8. Association of genetic polymorphisms in SOD2, SOD3, GPX3, and GSTT1 with hypertriglyceridemia and low HDL-C level in subjects with high risk of coronary artery disease. Decharatchakul N, etal., PeerJ. 2019 Aug 1;7:e7407. doi: 10.7717/peerj.7407. eCollection 2019.
9. Reduction of renal superoxide dismutase in progressive diabetic nephropathy. Fujita H, etal., J Am Soc Nephrol. 2009 Jun;20(6):1303-13. Epub 2009 May 21.
10. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
11. Role of extracellular superoxide dismutase in hypertension. Gongora MC, etal., Hypertension. 2006 Sep;48(3):473-81. Epub 2006 Jul 24.
12. Upregulation of vascular extracellular superoxide dismutase in patients with acute coronary syndromes. Horiuchi M, etal., Arterioscler Thromb Vasc Biol. 2004 Jan;24(1):106-11. Epub 2003 Oct 30.
13. Gene transfer of extracellular superoxide dismutase improves endothelial function in rats with heart failure. Iida S, etal., Am J Physiol Heart Circ Physiol. 2005 Aug;289(2):H525-32.
14. Vascular effects of a common gene variant of extracellular superoxide dismutase in heart failure. Iida S, etal., Am J Physiol Heart Circ Physiol. 2006 Aug;291(2):H914-20.
15. Genetically increased antioxidative protection and decreased chronic obstructive pulmonary disease. Juul K, etal., Am J Respir Crit Care Med. 2006 Apr 15;173(8):858-64. Epub 2006 Jan 6.
16. Genetically reduced antioxidative protection and increased ischemic heart disease risk: The Copenhagen City Heart Study. Juul K, etal., Circulation. 2004 Jan 6;109(1):59-65. Epub 2003 Dec 8.
17. Serum extracellular superoxide dismutase in patients with type 2 diabetes: relationship to the development of micro- and macrovascular complications. Kimura F, etal., Diabetes Care. 2003 Apr;26(4):1246-50.
18. Extracellular superoxide dismutase has a highly specific localization in idiopathic pulmonary fibrosis/usual interstitial pneumonia. Kinnula VL, etal., Histopathology. 2006 Jul;49(1):66-74.
19. Vascular extracellular superoxide dismutase activity in patients with coronary artery disease: relation to endothelium-dependent vasodilation. Landmesser U, etal., Circulation. 2000 May 16;101(19):2264-70.
20. Skeletal muscle reperfusion injury is enhanced in extracellular superoxide dismutase knockout mouse. Park JW, etal., Am J Physiol Heart Circ Physiol. 2005 Jul;289(1):H181-7. Epub 2005 Mar 18.
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PMID:1477980   PMID:1505778   PMID:2106874   PMID:2276747   PMID:3476950   PMID:6541229   PMID:7662997   PMID:7959763   PMID:8034674   PMID:8546689   PMID:8694786   PMID:8864862  
PMID:8889548   PMID:9699963   PMID:10329680   PMID:11299047   PMID:11861638   PMID:12052468   PMID:12126755   PMID:12475988   PMID:12477932   PMID:12885586   PMID:14619883   PMID:14704872  
PMID:14736885   PMID:14975589   PMID:15044467   PMID:15166009   PMID:15223067   PMID:15489334   PMID:15528465   PMID:15761197   PMID:15869407   PMID:15899505   PMID:16335952   PMID:16344560  
PMID:16371425   PMID:16467073   PMID:16469315   PMID:16611809   PMID:16792821   PMID:16809550   PMID:16899934   PMID:17023265   PMID:17070542   PMID:17296902   PMID:17601350   PMID:17646272  
PMID:17679946   PMID:17717013   PMID:17937792   PMID:18160848   PMID:18165226   PMID:18314536   PMID:18385137   PMID:18599502   PMID:18676680   PMID:18682580   PMID:18703790   PMID:18720901  
PMID:18726685   PMID:18948423   PMID:18971527   PMID:18977241   PMID:19016244   PMID:19108943   PMID:19170196   PMID:19200140   PMID:19213780   PMID:19242068   PMID:19289127   PMID:19318538  
PMID:19390575   PMID:19423521   PMID:19423540   PMID:19488773   PMID:19495415   PMID:19505917   PMID:19526392   PMID:19533864   PMID:19625176   PMID:19636420   PMID:19692168   PMID:19705749  
PMID:19789190   PMID:19811392   PMID:19913121   PMID:19933216   PMID:19948975   PMID:20079429   PMID:20226522   PMID:20237496   PMID:20406964   PMID:20438785   PMID:20452482   PMID:20477822  
PMID:20485444   PMID:20514411   PMID:20551380   PMID:20576801   PMID:20600835   PMID:20628086   PMID:20673035   PMID:20673868   PMID:20800603   PMID:20966810   PMID:21077177   PMID:21077778  
PMID:21080077   PMID:21351093   PMID:21362472   PMID:21473702   PMID:21493784   PMID:21554548   PMID:21621610   PMID:21641397   PMID:21781513   PMID:21873635   PMID:21957979   PMID:22064654  
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SOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38424,795,573 - 24,800,842 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl424,789,912 - 24,800,842 (+)EnsemblGRCh38hg38GRCh38
GRCh37424,797,195 - 24,802,464 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36424,406,183 - 24,411,565 (+)NCBINCBI36Build 36hg18NCBI36
Build 34424,472,323 - 24,478,733NCBI
Celera425,246,551 - 25,251,936 (+)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,139,594 - 24,144,972 (+)NCBIHuRef
CHM1_1424,796,442 - 24,801,824 (+)NCBICHM1_1
T2T-CHM13v2.0424,777,502 - 24,782,774 (+)NCBIT2T-CHM13v2.0
Sod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39552,521,146 - 52,527,080 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl552,521,133 - 52,528,760 (+)EnsemblGRCm39 Ensembl
GRCm38552,363,804 - 52,369,738 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl552,363,791 - 52,371,418 (+)EnsemblGRCm38mm10GRCm38
MGSCv37552,755,043 - 52,760,977 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36552,652,052 - 52,657,986 (+)NCBIMGSCv36mm8
Celera549,732,370 - 49,738,292 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map527.92NCBI
Sod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,822,865 - 62,828,602 (-)NCBIGRCr8
mRatBN7.21458,610,104 - 58,615,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1458,609,958 - 58,615,990 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1463,014,801 - 63,020,544 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01464,328,499 - 64,334,244 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,725,263 - 60,731,010 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,958,583 - 60,971,143 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,958,592 - 60,964,324 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01461,071,304 - 61,083,776 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41463,381,447 - 63,387,180 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11463,383,838 - 63,389,571 (-)NCBI
Celera1457,707,717 - 57,713,440 (-)NCBICelera
Cytogenetic Map14q11NCBI
Sod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955480257,716 - 263,149 (-)NCBIChiLan1.0ChiLan1.0
SOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2325,042,416 - 25,047,841 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1425,239,089 - 25,248,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0419,195,941 - 19,201,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1424,480,912 - 24,486,382 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl424,485,059 - 24,485,781 (+)Ensemblpanpan1.1panPan2
SOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,382,698 - 85,387,144 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,382,484 - 85,387,455 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,896,595 - 87,901,009 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0386,357,866 - 86,362,385 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl386,357,992 - 86,359,248 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,490,694 - 85,495,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0385,596,388 - 85,600,748 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,980,631 - 85,986,057 (-)NCBIUU_Cfam_GSD_1.0
SOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl818,796,637 - 18,802,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1818,796,633 - 18,802,156 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2819,293,239 - 19,293,972 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12725,554,474 - 25,559,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2725,555,082 - 25,555,804 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604772,074,072 - 72,079,449 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247557,535,044 - 7,541,221 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247557,535,044 - 7,541,298 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in SOD3
41 total Variants

1 to 10 of 82 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_003102.4(SOD3):c.691C>G (p.Arg231Gly) single nucleotide variant SOD3-related disorder [RCV003924831]|Superoxide dismutase, elevated extracellular [RCV000013615] Chr4:24800212 [GRCh38]
Chr4:24800212..24800213 [GRCh38]
Chr4:24801834 [GRCh37]
Chr4:24801834..24801835 [GRCh37]
Chr4:4p15.2
pathogenic|likely benign
GRCh38/hg38 4p16.3-15.1(chr4:72555-28066309)x1 copy number loss See cases [RCV000051642] Chr4:72555..28066309 [GRCh38]
Chr4:72447..28067931 [GRCh37]
Chr4:62447..27677029 [NCBI36]
Chr4:4p16.3-15.1
pathogenic
GRCh38/hg38 4p16.3-15.2(chr4:51519-26519788)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051752]|See cases [RCV000051752] Chr4:51519..26519788 [GRCh38]
Chr4:51413..26521410 [GRCh37]
Chr4:41413..26130508 [NCBI36]
Chr4:4p16.3-15.2
pathogenic
GRCh38/hg38 4p16.3-15.1(chr4:72555-33130620)x3 copy number gain See cases [RCV000051753] Chr4:72555..33130620 [GRCh38]
Chr4:72447..33132242 [GRCh37]
Chr4:62447..32808637 [NCBI36]
Chr4:4p16.3-15.1
pathogenic
GRCh38/hg38 4p16.3-14(chr4:85149-38700366)x3 copy number gain See cases [RCV000051757] Chr4:85149..38700366 [GRCh38]
Chr4:85040..38701987 [GRCh37]
Chr4:75040..38378382 [NCBI36]
Chr4:4p16.3-14
pathogenic
GRCh38/hg38 4p15.31-15.2(chr4:21056309-26732162)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053263]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053263]|See cases [RCV000053263] Chr4:21056309..26732162 [GRCh38]
Chr4:21057932..26733784 [GRCh37]
Chr4:20667030..26342882 [NCBI36]
Chr4:4p15.31-15.2
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain See cases [RCV002292704] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh38/hg38 4p16.3-14(chr4:72555-39477144)x3 copy number gain See cases [RCV000133677] Chr4:72555..39477144 [GRCh38]
Chr4:72447..39478764 [GRCh37]
Chr4:62447..39155159 [NCBI36]
Chr4:4p16.3-14
pathogenic
GRCh38/hg38 4p15.2(chr4:23862000-27685546)x1 copy number loss See cases [RCV000135404] Chr4:23862000..27685546 [GRCh38]
Chr4:23863623..27687168 [GRCh37]
Chr4:23472721..27296266 [NCBI36]
Chr4:4p15.2
pathogenic
GRCh38/hg38 4p15.32-15.1(chr4:16925022-32113076)x1 copy number loss See cases [RCV000135806] Chr4:16925022..32113076 [GRCh38]
Chr4:16926645..32114698 [GRCh37]
Chr4:16535743..31758596 [NCBI36]
Chr4:4p15.32-15.1
pathogenic|likely pathogenic
1 to 10 of 82 rows

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR21hsa-miR-21-5pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22836756
MIR21hsa-miR-21-5pOncomiRDBexternal_infoNANA22836756

Predicted Target Of
Summary Value
Count of predictions:911
Count of miRNA genes:575
Interacting mature miRNAs:637
Transcripts:ENST00000382120, ENST00000593742, ENST00000598411
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597277960GWAS1374034_Hextracellular superoxide dismutase [Cu-Zn] measurement QTL GWAS1374034 (human)9e-204extracellular superoxide dismutase [Cu-Zn] measurement42480021224800213Human
597300952GWAS1397026_Hextracellular superoxide dismutase [Cu-Zn] measurement QTL GWAS1397026 (human)4e-140extracellular superoxide dismutase [Cu-Zn] measurement42480021224800213Human
597120709GWAS1216783_Hblood protein measurement QTL GWAS1216783 (human)3e-21blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)42480021224800213Human
597263450GWAS1359524_Hsuperoxide dismutase [Cu-Zn] measurement QTL GWAS1359524 (human)2e-99superoxide dismutase [Cu-Zn] measurement42480021224800213Human
597171787GWAS1267861_Hprotein measurement QTL GWAS1267861 (human)1e-413protein measurement42480021224800213Human
597171788GWAS1267862_Hprotein measurement QTL GWAS1267862 (human)8e-17protein measurement42479969324799694Human
597122491GWAS1218565_Hblood protein measurement QTL GWAS1218565 (human)4e-13blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)42480021224800213Human
597122762GWAS1218836_Hblood protein measurement QTL GWAS1218836 (human)5e-33blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)42480021224800213Human
597172743GWAS1268817_Hprotein measurement QTL GWAS1268817 (human)1e-14protein measurement42480021224800213Human

1 to 9 of 9 rows



adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2405 2788 2232 4937 1717 2282 6 621 1339 462 2244 6683 5875 28 3712 1 842 1717 1549 170 1


1 to 18 of 18 rows
RefSeq Transcripts NG_012213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008487025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_427488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY787834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI757365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM677660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR541853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA668533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S71544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENST00000382120   ⟹   ENSP00000371554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl424,795,573 - 24,800,842 (+)Ensembl
Ensembl Acc Id: ENST00000593742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl424,789,947 - 24,790,606 (+)Ensembl
Ensembl Acc Id: ENST00000598411   ⟹   ENSP00000472134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl424,789,912 - 24,799,683 (+)Ensembl
RefSeq Acc Id: NM_003102   ⟹   NP_003093
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38424,795,573 - 24,800,842 (+)NCBI
GRCh37424,797,085 - 24,802,467 (+)ENTREZGENE
Build 36424,406,183 - 24,411,565 (+)NCBI Archive
HuRef424,139,594 - 24,144,972 (+)ENTREZGENE
CHM1_1424,796,442 - 24,801,824 (+)NCBI
T2T-CHM13v2.0424,777,502 - 24,782,774 (+)NCBI
Sequence:
RefSeq Acc Id: XR_008487025
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0424,777,502 - 24,782,774 (+)NCBI
RefSeq Acc Id: XR_427488
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38424,795,573 - 24,800,842 (+)NCBI
Sequence:
RefSeq Acc Id: NP_003093   ⟸   NM_003102
- Peptide Label: preproprotein
- UniProtKB: Q5U781 (UniProtKB/Swiss-Prot),   Q6FHA2 (UniProtKB/Swiss-Prot),   P08294 (UniProtKB/Swiss-Prot),   A0A140VJU8 (UniProtKB/TrEMBL),   B2R9V7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000472134   ⟸   ENST00000598411
Ensembl Acc Id: ENSP00000371554   ⟸   ENST00000382120
Name Modeler Protein Id AA Range Protein Structure
AF-P08294-F1-model_v2 AlphaFold P08294 1-240 view protein structure

RGD ID:6867142
Promoter ID:EPDNEW_H6736
Type:initiation region
Name:SOD3_1
Description:superoxide dismutase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38424,795,586 - 24,795,646EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
COSMIC SOD3 COSMIC
Ensembl Genes ENSG00000109610 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000382120 ENTREZGENE
  ENST00000382120.4 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.200 UniProtKB/Swiss-Prot
GTEx ENSG00000109610 GTEx
HGNC ID HGNC:11181 ENTREZGENE
Human Proteome Map SOD3 Human Proteome Map
InterPro SOD-like_Cu/Zn_dom_sf UniProtKB/Swiss-Prot
  SOD_Cu/Zn_/chaperone UniProtKB/Swiss-Prot
  SOD_Cu/Zn_BS UniProtKB/Swiss-Prot
  SOD_Cu_Zn_dom UniProtKB/Swiss-Prot
KEGG Report hsa:6649 UniProtKB/Swiss-Prot
NCBI Gene 6649 ENTREZGENE
OMIM 185490 OMIM
PANTHER PTHR10003 UniProtKB/Swiss-Prot
Pfam Sod_Cu UniProtKB/Swiss-Prot
PharmGKB PA36018 PharmGKB
PRINTS CUZNDISMTASE UniProtKB/Swiss-Prot
PROSITE SOD_CU_ZN_1 UniProtKB/Swiss-Prot
  SOD_CU_ZN_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49329 UniProtKB/Swiss-Prot
UniProt A0A140VJU8 ENTREZGENE, UniProtKB/TrEMBL
  B2R9V7 ENTREZGENE, UniProtKB/TrEMBL
  M0R1V4_HUMAN UniProtKB/TrEMBL
  P08294 ENTREZGENE
  Q5U781 ENTREZGENE
  Q6FHA2 ENTREZGENE
  SODE_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q5U781 UniProtKB/Swiss-Prot
  Q6FHA2 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-17 SOD3  superoxide dismutase 3  SOD3  superoxide dismutase 3, extracellular  Symbol and/or name change 5135510 APPROVED