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bacterial gastritis - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:bacterial gastritis
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Accession:DOID:4033 term browser browse the term
Definition:A gastritis that involves inflammation of the stomach lining caused by bacteria. The disease has_symptom abdominal pain, has_symptom indigestion, has_symptom ulcer formation, has_symptom abdominal bloating, has_symptom nausea and has_symptom vomiting. (DO)
Synonyms:xref: NCI:C27340
For additional species annotation, visit the Alliance of Genome Resources.

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bacterial gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G M Cxcl15 C-X-C motif chemokine ligand 15 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr 5:90,942,393...90,950,926
Ensembl chr 5:90,942,393...90,950,926 		JBrowse link
G N Cxcl8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chrNW_004624730:1,744,097...1,747,206
Ensembl chrNW_004624730:1,743,916...1,747,293 		JBrowse link
G G CXCL8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr 7:22,202,497...22,205,730
Ensembl chr 7:22,202,527...22,204,068 		JBrowse link
G P CXCL8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861 		JBrowse link
G D CXCL8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr13:62,435,035...62,438,354
Ensembl chr13:62,434,422...62,438,354 		JBrowse link
G B CXCL8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr 4:50,452,857...50,456,015
Ensembl chr 4:56,286,708...56,288,083 		JBrowse link
G C Cxcl8 C-X-C motif chemokine ligand 8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643 		JBrowse link
G H CXCL8 C-X-C motif chemokine ligand 8 susceptibility IAGP associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,519...73,743,716 		JBrowse link
G D IL32 interleukin 32 exacerbates ISO associated with Helicobacter Infections;mRNA, protein:increased expression:stomach (human) RGD PMID:24633341 RGD:150340727 NCBI chr 6:38,119,287...38,122,979 JBrowse link
G B IL32 interleukin 32 exacerbates ISO associated with Helicobacter Infections;mRNA, protein:increased expression:stomach (human) RGD PMID:24633341 RGD:150340727 NCBI chr16:2,007,018...2,023,757
Ensembl chr16:3,179,637...3,203,929 		JBrowse link
G H IL32 interleukin 32 exacerbates IEP associated with Helicobacter Infections;mRNA, protein:increased expression:stomach (human) RGD PMID:24633341 RGD:150340727 NCBI chr16:3,065,403...3,069,530
Ensembl chr16:3,065,297...3,082,192 		JBrowse link
G N Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chrNW_004624736:9,724,876...9,827,364
Ensembl chrNW_004624736:9,724,369...9,830,365 		JBrowse link
G G JAK2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr12:74,421,243...74,566,766
Ensembl chr12:74,421,016...74,566,710 		JBrowse link
G P JAK2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 1:216,849,744...217,002,310
Ensembl chr 1:216,848,689...217,002,148 		JBrowse link
G S Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chrNW_004936503:111,722...243,627
Ensembl chrNW_004936503:110,963...241,867 		JBrowse link
G D JAK2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 1:93,321,055...93,438,898
Ensembl chr 1:93,142,635...93,435,997 		JBrowse link
G B JAK2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 9:4,820,303...4,971,867
Ensembl chr 9:5,006,271...5,156,626 		JBrowse link
G C Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208 		JBrowse link
G R Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 1:236,408,905...236,468,769
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G M Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr19:29,229,006...29,290,495
Ensembl chr19:29,229,228...29,290,480 		JBrowse link
G H JAK2 Janus kinase 2 IEP protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 9:4,984,390...5,129,948
Ensembl chr 9:4,984,390...5,129,948 		JBrowse link
G S LOC101964975 interleukin-8 susceptibility ISO associated with Helicobacter Infections;DNA:SNP:promoter: -251T>A (rs4073) (human) RGD PMID:31522447 RGD:40925938 NCBI chrNW_004936598:1,779,471...1,781,353
Ensembl chrNW_004936598:1,779,471...1,781,353 		JBrowse link
G M Mir146 microRNA 146 ISO associated with Helicobacter Infections;miRNA:increased expression:mucosa of stomach (human) RGD PMID:30535468 RGD:126925144 NCBI chr11:43,265,224...43,265,288
Ensembl chr11:43,265,224...43,265,288 		JBrowse link
G R Mir146a microRNA 146a ISO associated with Helicobacter Infections;miRNA:increased expression:mucosa of stomach (human) RGD PMID:30535468 RGD:126925144 NCBI chr10:28,349,996...28,350,090
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G H MIR146A microRNA 146a IEP associated with Helicobacter Infections;miRNA:increased expression:mucosa of stomach (human) RGD PMID:30535468 RGD:126925144 NCBI chr 5:160,485,352...160,485,450
Ensembl chr 5:160,485,352...160,485,450 		JBrowse link
G D MIR375 microRNA mir-375 ISO protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr37:25,568,052...25,568,121
Ensembl chr37:25,568,052...25,568,127 		JBrowse link
G R Mir375 microRNA 375 ISO protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 9:83,906,582...83,906,656
Ensembl chr 9:76,457,911...76,457,985 		JBrowse link
G M Mir375 microRNA 375 ISO protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 1:74,939,817...74,939,880
Ensembl chr 1:74,939,817...74,939,880 		JBrowse link
G H MIR375 microRNA 375 IEP protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 2:219,001,645...219,001,708
Ensembl chr 2:219,001,645...219,001,708 		JBrowse link
G G TREM1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr17:30,873,647...30,885,292
Ensembl chr17:30,873,666...30,886,967 		JBrowse link
G P TREM1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr 7:36,510,253...36,531,796
Ensembl chr 7:36,510,253...36,531,796 		JBrowse link
G S Trem1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chrNW_004936476:18,577,825...18,583,675
Ensembl chrNW_004936476:18,574,381...18,583,647 		JBrowse link
G D TREM1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr12:9,990,678...10,000,195
Ensembl chr12:9,990,679...10,000,236 		JBrowse link
G B TREM1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr 6:40,861,283...40,874,446
Ensembl chr 6:42,163,337...42,183,091 		JBrowse link
G R Trem1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr 9:20,259,227...20,276,879
Ensembl chr 9:12,763,819...12,779,203 		JBrowse link
G M Trem1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr17:48,539,763...48,553,955
Ensembl chr17:48,539,796...48,553,952 		JBrowse link
G H TREM1 triggering receptor expressed on myeloid cells 1 IEP mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr 6:41,267,385...41,286,682
Ensembl chr 6:41,267,100...41,286,682 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 288179
    disease by infectious agent 27209
      Bacterial Infections and Mycoses 11275
        bacterial infectious disease 8617
          bacterial gastritis 37
Path 2
Term Annotations click to browse term
  disease 288179
    disease of anatomical entity 271815
      Immune & Inflammatory Diseases 73737
        Inflammation 37720
          gastroenteritis 8863
            gastritis 256
              bacterial gastritis 37
paths to the root