TREM1 (triggering receptor expressed on myeloid cells 1) - Rat Genome Database

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Gene: TREM1 (triggering receptor expressed on myeloid cells 1) Sus scrofa
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Symbol: TREM1
Name: triggering receptor expressed on myeloid cells 1
RGD ID: 13881123
Description: ENCODES a protein that exhibits receptor decoy activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to vitamin D (ortholog); neutrophil chemotaxis (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); acute pancreatitis (ortholog); allergic asthma (ortholog); FOUND IN cell surface (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: TREM-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,510,253 - 36,531,796 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,510,253 - 36,531,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,804,122 - 41,825,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15325519   PMID:15451618   PMID:30032202  


Genomics

Comparative Map Data
TREM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,510,253 - 36,531,796 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,510,253 - 36,531,796 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,804,122 - 41,825,672 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TREM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,267,385 - 41,286,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,267,100 - 41,286,682 (-)EnsemblGRCh38hg38GRCh38
GRCh37641,235,123 - 41,254,420 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,351,690 - 41,362,435 (-)NCBINCBI36Build 36hg18NCBI36
Build 34641,351,689 - 41,362,435NCBI
Celera642,797,142 - 42,807,885 (-)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef640,961,518 - 40,972,978 (-)NCBIHuRef
CHM1_1641,246,251 - 41,257,709 (-)NCBICHM1_1
T2T-CHM13v2.0641,096,688 - 41,115,965 (-)NCBIT2T-CHM13v2.0
Trem1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,539,763 - 48,553,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,539,796 - 48,553,952 (+)EnsemblGRCm39 Ensembl
GRCm381748,232,713 - 48,246,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,232,768 - 48,246,924 (+)EnsemblGRCm38mm10GRCm38
MGSCv371748,371,922 - 48,386,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,698,178 - 47,712,333 (+)NCBIMGSCv36mm8
Celera1751,668,001 - 51,682,161 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
Trem1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,259,227 - 20,276,879 (-)NCBIGRCr8
mRatBN7.2912,763,819 - 12,779,285 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl912,763,819 - 12,779,203 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,277,179 - 21,288,238 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,343,405 - 26,354,464 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0924,732,622 - 24,743,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0914,727,887 - 14,743,371 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl914,727,976 - 14,809,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0913,649,246 - 13,664,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,175,081 - 8,186,142 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.198,175,083 - 8,193,441 (-)NCBI
Celera910,535,490 - 10,546,547 (-)NCBICelera
Cytogenetic Map9q12NCBI
TREM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2555,770,728 - 55,782,228 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,639,052 - 51,652,228 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0640,861,283 - 40,874,446 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,168,992 - 42,182,134 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,163,337 - 42,183,091 (-)Ensemblpanpan1.1panPan2
TREM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1129,990,678 - 10,000,195 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl129,990,679 - 10,000,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,020,952 - 10,030,132 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,470,281 - 10,479,802 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1210,470,277 - 10,479,839 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,002,655 - 10,011,845 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,084,374 - 10,093,559 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,179,448 - 10,188,597 (-)NCBIUU_Cfam_GSD_1.0
Trem1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,374,752 - 45,385,967 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,574,381 - 18,583,647 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,577,825 - 18,583,675 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TREM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,873,647 - 30,885,292 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,873,666 - 30,886,967 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,275,669 - 41,288,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TREM1
625 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
7 2 1 2 5 6 5 1 1 3

Sequence


Ensembl Acc Id: ENSSSCT00000039577   ⟹   ENSSSCP00000032872
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl736,510,253 - 36,531,796 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000076447   ⟹   ENSSSCP00000072323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl736,513,504 - 36,531,771 (-)Ensembl
RefSeq Acc Id: NM_213756   ⟹   NP_998921
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1736,510,253 - 36,531,796 (-)NCBI
Sequence:
RefSeq Acc Id: NP_998921   ⟸   NM_213756
- Peptide Label: precursor
- UniProtKB: Q6TYI6 (UniProtKB/Swiss-Prot),   R4SEY7 (UniProtKB/TrEMBL),   A0A8D0MIH2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000032872   ⟸   ENSSSCT00000039577
Ensembl Acc Id: ENSSSCP00000072323   ⟸   ENSSSCT00000076447
Protein Domains
Ig-like   Ig-like V-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033251 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005039233 UniProtKB/Swiss-Prot
  ENSSSCG00015007920 UniProtKB/TrEMBL
  ENSSSCG00025056327 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030064941 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035023393 UniProtKB/TrEMBL
  ENSSSCG00040062842 UniProtKB/TrEMBL
  ENSSSCG00045011920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050004829 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055013571 UniProtKB/TrEMBL
  ENSSSCG00060052590 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00065070055 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070001782 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039577 ENTREZGENE
  ENSSSCT00000039577.2 UniProtKB/TrEMBL
  ENSSSCT00000039577.3 UniProtKB/Swiss-Prot
  ENSSSCT00005062763 UniProtKB/Swiss-Prot
  ENSSSCT00015010438.1 UniProtKB/TrEMBL
  ENSSSCT00015010470.1 UniProtKB/TrEMBL
  ENSSSCT00025077021.1 UniProtKB/Swiss-Prot
  ENSSSCT00025077120.1 UniProtKB/TrEMBL
  ENSSSCT00030090753.1 UniProtKB/Swiss-Prot
  ENSSSCT00030090787.1 UniProtKB/TrEMBL
  ENSSSCT00035030654.1 UniProtKB/TrEMBL
  ENSSSCT00035030657.1 UniProtKB/TrEMBL
  ENSSSCT00040085688.1 UniProtKB/TrEMBL
  ENSSSCT00045020223.1 UniProtKB/Swiss-Prot
  ENSSSCT00045020245.1 UniProtKB/TrEMBL
  ENSSSCT00050006643.1 UniProtKB/Swiss-Prot
  ENSSSCT00050006649.1 UniProtKB/TrEMBL
  ENSSSCT00055026767.1 UniProtKB/TrEMBL
  ENSSSCT00060071570.1 UniProtKB/Swiss-Prot
  ENSSSCT00060071581.1 UniProtKB/TrEMBL
  ENSSSCT00065096170.1 UniProtKB/Swiss-Prot
  ENSSSCT00065096177.1 UniProtKB/TrEMBL
  ENSSSCT00070003334.1 UniProtKB/TrEMBL
  ENSSSCT00070003337.1 UniProtKB/TrEMBL
  ENSSSCT00070003345.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396601 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene TREM1 ENTREZGENE
PANTHER PTHR19357:SF0 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIGGERING RECEPTOR EXPRESSED ON MYELOID CELLS 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1SJZ9_PIG UniProtKB/TrEMBL
  A0A4X1SL76_PIG UniProtKB/TrEMBL
  A0A4X1SL84_PIG UniProtKB/TrEMBL
  A0A5S6H2E2_PIG UniProtKB/TrEMBL
  A0A8D0MIH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TV37_PIG UniProtKB/TrEMBL
  A0A8D0XVC7_PIG UniProtKB/TrEMBL
  Q6TYI6 ENTREZGENE
  R4SEY7 ENTREZGENE, UniProtKB/TrEMBL
  TREM1_PIG UniProtKB/Swiss-Prot
VGNC ID VGNC:94383 ENTREZGENE