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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:gastritis
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Accession:DOID:4029 term browser browse the term
Definition:A stomach disease that is an inflammation of the lining of the stomach. (DO)
Synonyms:exact_synonym: Gastritides
 narrow_synonym: acute gastric mucosal erosion;   chronic gastritis;   erosive gastritis;   erosive gastropathy
 primary_id: MESH:D005756
 xref: EFO:0000217;   EFO:0000337;   ICD10CM:K29.7;   NCI:C26780
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO associated with Autoimmune Diseases RGD PMID:18716662 RGD:11039453 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Arpc1b actin related protein 2/3 complex, subunit 1B ISO DNA:hypermethylation:promoter: (human) RGD PMID:23292007 RGD:11046273 NCBI chr12:9,482,176...9,495,772
Ensembl chr12:9,480,831...9,495,747 		JBrowse link
G Cblif cobalamin binding intrinsic factor IMP RGD PMID:1097299 RGD:11049585 NCBI chr 1:208,605,983...208,620,231
Ensembl chr 1:208,605,983...208,620,344 		JBrowse link
G Ccl2 C-C motif chemokine ligand 2 treatment IDA RGD PMID:23892052 RGD:11526150 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226 		JBrowse link
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:15112335 RGD:14700949 NCBI chr 2:195,649,845...195,655,402
Ensembl chr 2:195,649,845...195,655,411 		JBrowse link
G Mir155 microRNA 155 ISO RGD PMID:29250766 RGD:21408595 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718 		JBrowse link
G Nfkbia NFKB inhibitor alpha treatment IDA associated with Helicobacter Infections RGD PMID:25335260 RGD:10413874 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP mRNA:increased expression:stomach mucosa RGD PMID:18646190 RGD:2300274 NCBI chr13:62,163,936...62,172,193
Ensembl chr13:62,163,932...62,172,188 		JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO associated with Helicobacter Infections; DNA:missense mutations:CDS:p.H292R, p.H295R (mouse) RGD PMID:30884828 RGD:151361146 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977 		JBrowse link
G Tnf tumor necrosis factor treatment IDA RGD PMID:25335260 RGD:10413874 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
atrophic gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:30539573 RGD:14696739 NCBI chr16:76,144,150...76,153,063
Ensembl chr16:76,144,150...76,153,063 		JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19448967 NCBI chr 3:116,577,005...116,583,386
Ensembl chr 3:116,577,010...116,583,415 		JBrowse link
G Mir146a microRNA 146a exacerbates ISO associated with Helicobacter Infections;miRNA:SNP, haplotype: (rs2910164) (human) RGD PMID:20721625 RGD:126925150 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir155 microRNA 155 treatment IEP RGD PMID:27293468 RGD:25671480 NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213 		JBrowse link
G Pth parathyroid hormone ISO protein:increased expression:serum (human) RGD PMID:23447517 RGD:7242421 NCBI chr 1:167,508,121...167,511,530
Ensembl chr 1:167,508,598...167,511,530 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 susceptibility
severity		 ISO associated with Helicobacter Infections; DNA:SNP:Cds:
associated with Helicobacter Infections;DNA:SNP:intron: rs2301756(human)
DNA:SNP:intron:rs2301756 (human)
associated with Helicobacter Infections; DNA:SNP: :rs12423190 (human		 RGD PMID:17211494 PMID:19589142 PMID:18712962 PMID:22788847 RGD:39128202, RGD:39128247, RGD:39131286, RGD:39131289 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr14:97,690,105...97,721,194
Ensembl chr14:97,695,161...97,720,892 		JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism (human)
associated with Helicobacter Infections; DNA:polymorphism: :HLA- DQB1*0401(human)		 RGD PMID:20082482 PMID:10616761 RGD:5147582, RGD:36174021 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphism (human) RGD PMID:20082482 RGD:5147582 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
bacterial gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jak2 Janus kinase 2 ISO protein:increased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 1:226,995,334...227,054,381
Ensembl chr 1:226,995,334...227,054,189 		JBrowse link
G Mir146a microRNA 146a ISO associated with Helicobacter Infections;miRNA:increased expression:mucosa of stomach (human) RGD PMID:30535468 RGD:126925144 NCBI chr10:27,848,516...27,848,610
Ensembl chr10:27,848,516...27,848,610 		JBrowse link
G Mir375 microRNA 375 ISO protein:decreased expression:stomach (human) RGD PMID:24718681 RGD:126928128 NCBI chr 9:76,457,911...76,457,985
Ensembl chr 9:76,457,911...76,457,985 		JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 ISO mRNA,protein:increased expression:gastric epithelium RGD PMID:18321350 RGD:126928123 NCBI chr 9:12,763,819...12,779,285
Ensembl chr 9:12,763,819...12,779,203 		JBrowse link
eosinophilic gastroenteritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl26 C-C motif chemokine ligand 26 ISO mRNA:increased expression:gastric antrum (human) RGD PMID:25234644 RGD:11081160 NCBI chr12:21,109,384...21,114,336
Ensembl chr12:21,109,421...21,114,335 		JBrowse link
G Il5 interleukin 5 ISO protein:increased expression:intestine, eosinophil RGD PMID:8608886 RGD:11354940 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213 		JBrowse link
gastric mucosal hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:20476858 RGD:14696744 NCBI chr16:76,144,150...76,153,063
Ensembl chr16:76,144,150...76,153,063 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19100
    disease of anatomical entity 18440
      gastrointestinal system disease 7176
        gastroenteritis 569
          gastritis 26
            alcoholic gastritis 0
            atrophic gastritis 11
            bacterial gastritis 4
            eosinophilic gastritis 0
            eosinophilic gastroenteritis 2
            fungal gastritis 0
            gastric mucosal hypertrophy 1
            granulomatous gastritis 0
            lymphocytic gastritis 0
            necrotizing gastritis 0
            viral gastritis + 0
Path 2
Term Annotations click to browse term
  disease 19100
    disease of anatomical entity 18440
      Immune & Inflammatory Diseases 5757
        Inflammation 2834
          gastroenteritis 569
            gastritis 26
              alcoholic gastritis 0
              atrophic gastritis 11
              bacterial gastritis 4
              eosinophilic gastritis 0
              eosinophilic gastroenteritis 2
              fungal gastritis 0
              gastric mucosal hypertrophy 1
              granulomatous gastritis 0
              lymphocytic gastritis 0
              necrotizing gastritis 0
              viral gastritis + 0
paths to the root