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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:gastritis
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Accession:DOID:4029 term browser browse the term
Definition:Inflammation of the GASTRIC MUCOSA, a lesion observed in a number of unrelated disorders.
Synonyms:exact_synonym: Erosive Gastritis;   Erosive gastropathy;   Gastritides;   acute gastric mucosal erosion
 primary_id: MESH:D005756;   RDO:0001337
 xref: ICD10CM:K29.7;   NCI:C26780
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO associated with Autoimmune Diseases RGD PMID:18716662 RGD:11039453 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Arpc1b actin related protein 2/3 complex, subunit 1B ISO DNA:hypermethylation:promoter: (human) RGD PMID:23292007 RGD:11046273 NCBI chr12:11,252,300...11,265,849
Ensembl chr12:11,252,296...11,265,865
JBrowse link
G Cblif cobalamin binding intrinsic factor IMP RGD PMID:1097299 RGD:11049585 NCBI chr 1:228,118,048...228,132,296
Ensembl chr 1:228,118,048...228,132,404
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 treatment IDA RGD PMID:23892052 RGD:11526150 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Gstm1 glutathione S-transferase mu 1 ISO RGD PMID:15112335 RGD:14700949 NCBI chr 2:210,803,869...210,809,461
Ensembl chr 2:210,803,869...210,809,306
JBrowse link
G Mir155 microRNA 155 ISO RGD PMID:29250766 RGD:21408595 NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
JBrowse link
G Nfkbia NFKB inhibitor alpha treatment IDA associated with Helicobacter Infections RGD PMID:25335260 RGD:10413874 NCBI chr 6:76,267,227...76,270,457
Ensembl chr 6:76,267,228...76,270,457
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO associated with Helicobacter Infections;DNA:SNP: :c.802C>T (human) RGD PMID:20230816 RGD:5508759 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP mRNA:increased expression:stomach mucosa RGD PMID:18646190 RGD:2300274 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Tnf tumor necrosis factor treatment IDA RGD PMID:25335260 RGD:10413874 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
atrophic gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:30539573 RGD:14696739 NCBI chr16:81,136,218...81,145,131
Ensembl chr16:81,136,218...81,145,131
JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19448967 NCBI chr 3:121,876,256...121,882,637
Ensembl chr 3:121,876,263...121,882,726
JBrowse link
G Mir155 microRNA 155 treatment IEP RGD PMID:27293468 RGD:25671480 NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
JBrowse link
G Pth parathyroid hormone ISO protein:increased expression:serum (human) RGD PMID:23447517 RGD:7242421 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 susceptibility
severity
ISO associated with Helicobacter Infections; DNA:SNP:Cds:
associated with Helicobacter Infections; DNA:SNP: :rs12423190 (human
DNA:SNP:intron:rs2301756 (human)
associated with Helicobacter Infections;DNA:SNP:intron: rs2301756(human)
RGD PMID:17211494, PMID:22788847, PMID:18712962, PMID:19589142 RGD:39128202, RGD:39131289, RGD:39131286, RGD:39128247 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism (human)
associated with Helicobacter Infections; DNA:polymorphism: :HLA- DQB1*0401(human)
RGD PMID:20082482, PMID:10616761 RGD:5147582, RGD:36174021 NCBI chr20:4,043,726...4,049,367
Ensembl chr20:4,039,413...4,049,711
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphism (human) RGD PMID:20082482 RGD:5147582 NCBI chr20:4,087,621...4,097,190
Ensembl chr20:4,087,618...4,097,190
JBrowse link
eosinophilic gastroenteritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl26 C-C motif chemokine ligand 26 ISO mRNA:increased expression:gastric antrum (human) RGD PMID:25234644 RGD:11081160 NCBI chr12:24,157,182...24,161,870
Ensembl chr12:24,158,766...24,161,869
JBrowse link
G Il5 interleukin 5 ISO protein:increased expression:intestine, eosinophil RGD PMID:8608886 RGD:11354940 NCBI chr10:39,066,716...39,069,587
Ensembl chr10:39,066,716...39,069,587
JBrowse link
gastric mucosal hypertrophy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:20476858 RGD:14696744 NCBI chr16:81,136,218...81,145,131
Ensembl chr16:81,136,218...81,145,131
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16023
    disease of anatomical entity 15278
      gastrointestinal system disease 4632
        stomach disease 545
          gastritis 18
            alcoholic gastritis 0
            atrophic gastritis 7
            bacterial gastritis 0
            eosinophilic gastritis 0
            eosinophilic gastroenteritis 2
            fungal gastritis 0
            gastric mucosal hypertrophy 1
            granulomatous gastritis 0
            lymphocytic gastritis 0
            necrotizing gastritis 0
            viral gastritis + 0
Path 2
Term Annotations click to browse term
  disease 16023
    disease of anatomical entity 15278
      Immune & Inflammatory Diseases 3513
        Inflammation 2172
          gastroenteritis 424
            gastritis 18
              alcoholic gastritis 0
              atrophic gastritis 7
              bacterial gastritis 0
              eosinophilic gastritis 0
              eosinophilic gastroenteritis 2
              fungal gastritis 0
              gastric mucosal hypertrophy 1
              granulomatous gastritis 0
              lymphocytic gastritis 0
              necrotizing gastritis 0
              viral gastritis + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.