D9Rat113 Marker Search Result - Rat Genome Database

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Marker: D9Rat113

Symbol: D9Rat113
Previously known as: oxsts11632; R0223-D07; 
RGD ID: 41316
Expected Size: 144 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8980,729,977 - 80,730,121 (+)Marker Load Pipeline
mRatBN7.2973,280,528 - 73,280,672 (+)MAPPERmRatBN7.2
Rnor_6.0978,984,875 - 78,985,018NCBIRnor6.0
Rnor_5.0978,759,226 - 78,759,369UniSTSRnor5.0
RGSC_v3.4970,786,741 - 70,787,239RGDRGSC3.4
RGSC_v3.4970,787,018 - 70,787,161UniSTSRGSC3.4
RGSC_v3.1970,934,000 - 70,934,143RGD
Celera970,691,498 - 70,691,641UniSTS
RH 3.4 Map9670.0UniSTS
RH 3.4 Map9670.0RGD
RH 2.0 Map9724.4RGD
SHRSP x BN Map948.9198RGD
Cytogenetic Map9q33UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   RGD1563521  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer ACCTAATTTGTGCCAGCCCT
Reverse Primer GCAAGTGTCTGTAGTTGGGG
 
Template 
CAGGTCGACTCTAGAGGATCCCCCTGACATCCTAATTCTCCCTAAATTGCTCCACCAACTGGAG
ACCAAGCTTTCAGATTCCAGAGTCTATTCAGGATCTTCTGATTTAACAAGTACAGGGATCAAAC
CAGGGTTTTGTGCATGCTATGCTATTCTACTAACTGTGCTACAAAACCAGGCTTCTTAATTTTA
GATCTTTTTAAATGATGGGGGGAAAATGAAAAGAAGTAACACTTTATGATAGGAAAGTATCGAA
TGATACTCAAATTTCAGTGTTCAGAAGTGTTTTTTTCTTTTTGCAAGTGTCTGTAGTTGGGGGT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGTGTAGATGTGCATGCATN
TGTGTGTACATGGATGTGTAGGTTGATGTCTATAGGCNNGTGAGGGCTGGCACAAATTAGGTCA
AGACCATGATTNGACAGTAAAANAGTNGGAGGGGACAAAGTTTTTGTGAGGTGAGAANATGGGA
AANNGGAGATCACNGAT
Strain, Expected Size(s)

ACI/N 147 AVN/Orl 153 BBDP/Rhw 147
BBDR/Rhw 147 BC/CpbU 153 BDIX/Han 153
BN-Lx/Cub 147 BN/SsNHsd 147 BP/Cub 153
BUF/Pit 147 COP/OlaHsd 147 DA/PitN 147
DON/Melb 147 F344/Pit 147 FHH/Eur 153
GH/Omr 147 GK/KyoSwe 151 IS/Kyo 151
LE/Mol 153 LEW/Pit 145 LH/Mav 153
LN/Mav 153 LOU/CHan 153 M520/N 147
MHS/Gib 153 MNR/N 147 MNRA/N 147
MNS/Gib 161 MR/Pit 147 NEDH/K 153
NP9 147 ODU/N 157 OKA/Wsl 151
OM/Ztm 151 P5C 153 PVG/Pit 147
SD/Rij 153 SHR/OlaHsd 151 SHRSP/Riv 153
SR/Jr 153 SS/Jr 153 WAG/RijKyo 151
WF/Pit 147 WKY/OlaHsd 157 WN/N 161
WTC/Kyo 151


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41139219LOC120094699uncharacterized LOC12009469997326650873283004Rat
GenBank Nucleotide CH474044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat

1 to 10 of 28 rows


Database
Acc Id
Source(s)
NCBI Gene 501161 UniSTS