D11Rat76 Marker Search Result - Rat Genome Database

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Marker: D11Rat76

Symbol: D11Rat76
Previously known as: R0104-A05; oxsts9301; 
RGD ID: 40928
Expected Size: 262 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81140,404,878 - 40,405,140 (+)Marker Load Pipeline
mRatBN7.21126,918,635 - 26,918,897 (+)MAPPERmRatBN7.2
Rnor_6.01127,344,036 - 27,344,297NCBIRnor6.0
Rnor_6.01127,491,761 - 27,492,022NCBIRnor6.0
Rnor_5.01131,111,881 - 31,112,142UniSTSRnor5.0
Rnor_5.01130,968,537 - 30,968,798UniSTSRnor5.0
RGSC_v3.41127,445,463 - 27,445,890RGDRGSC3.4
RGSC_v3.41127,445,617 - 27,445,878UniSTSRGSC3.4
RGSC_v3.11127,445,617 - 27,445,878RGD
Celera1126,662,317 - 26,662,578UniSTS
RH 3.4 Map11136.6RGD
RH 3.4 Map11136.6UniSTS
SHRSP x BN Map115.9099RGD
SHRSP x BN Map115.9099UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   LOC100363574   LOC100362976  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CAGGAGCAGGGGACTTCATA
Reverse Primer CTTTCCTCTGCATTTCCAGTG
 
Template 
CGGTCGACTCTAGAGGATCCCCTTTTCTGTCTTCTTTCCTCTGCATTTCCAGTGTTTGTGACTT
GATTGGTTGCTAGTAAAGATTTATTGGTCAATAATATATACAATGCTAAGTCATTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTTTGTAGGTTAAGAGATACGTTTCATTTACAC
ATTGGACATCATTGGTTAGGAGTATGGAATCTTACATGGCACTCAGCAGTTAGATTACATGTAC
AAGGAATATGAAGTCCCCTGCTCCTGTGTCCTAATGTATCATCACATGGGGTAAGAATGACTGT
GCTTGAGCAATAGTGATAAAAACTGCATGGTATTGGTACAGAGACAGACAGATAGACCAATGGA
ACAGAATTCAAGACCCAGAAATGAACCCACACACCTATGGGCACTTGATTT

Region

Nucleotide Sequences
GenBank Nucleotide JH617240.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH617241.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100362976 UniSTS
  100363574 UniSTS